Wall clock time and date at job start Tue Mar 31 2020 04:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47302 * 2 1 4 4 C 1.46497 * 119.99867 * 274.99894 * 3 2 1 5 5 C 1.50702 * 109.47312 * 279.16291 * 4 3 2 6 6 H 1.07996 * 119.99998 * 359.68872 * 5 4 3 7 7 C 1.37881 * 119.99995 * 179.68739 * 5 4 3 8 8 N 1.31513 * 119.99884 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00014 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46760 * 90.00010 * 9 7 5 11 11 H 1.48494 * 109.47222 * 209.99869 * 9 7 5 12 12 H 1.48498 * 109.47228 * 329.99945 * 9 7 5 13 13 S 1.65597 * 120.00079 * 95.00388 * 3 2 1 14 14 O 1.42098 * 106.40184 * 330.25621 * 13 3 2 15 15 O 1.42100 * 106.40019 * 197.34245 * 13 3 2 16 16 N 1.65597 * 107.22241 * 83.80070 * 13 3 2 17 17 C 1.46502 * 120.00128 * 66.27954 * 16 13 3 18 18 C 1.50700 * 109.46801 * 163.30113 * 17 16 13 19 19 C 1.34846 * 125.88968 * 94.69555 * 18 17 16 20 20 C 1.40892 * 107.41519 * 179.88289 * 19 18 17 21 21 C 1.34848 * 107.41653 * 0.37546 * 20 19 18 22 22 N 1.36332 * 108.22085 * 359.77327 * 21 20 19 23 23 C 1.46497 * 125.63917 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.46874 * 300.00316 * 1 2 3 25 25 H 1.09000 * 109.47194 * 59.99808 * 1 2 3 26 26 H 1.08998 * 109.47401 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46874 * 239.99684 * 2 1 3 28 28 H 1.09000 * 109.47194 * 120.00191 * 2 1 3 29 29 H 1.08998 * 109.47391 * 39.16191 * 4 3 2 30 30 H 1.09002 * 109.47225 * 159.16101 * 4 3 2 31 31 H 0.97000 * 120.00039 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99917 * 246.01126 * 16 13 3 33 33 H 1.08990 * 109.47175 * 283.30323 * 17 16 13 34 34 H 1.09005 * 109.46890 * 43.30320 * 17 16 13 35 35 H 1.07999 * 126.29300 * 0.02562 * 19 18 17 36 36 H 1.08007 * 126.28775 * 180.13429 * 20 19 18 37 37 H 1.08002 * 125.88899 * 179.80715 * 21 20 19 38 38 H 1.09002 * 109.47261 * 269.97706 * 23 22 21 39 39 H 1.08998 * 109.47139 * 29.96839 * 23 22 21 40 40 H 1.09002 * 109.47587 * 149.97218 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4491 1.7108 -1.9322 6 1 4.1025 0.9921 -1.4601 7 6 3.7959 2.2643 -3.1465 8 7 4.9225 1.9175 -3.7295 9 14 2.6653 3.5068 -3.9635 10 1 3.0289 4.8756 -3.5168 11 1 2.8099 3.4128 -5.4384 12 1 1.2584 3.2199 -3.5849 13 16 2.4123 2.1201 1.4286 14 8 1.5796 1.5402 2.4233 15 8 2.4483 3.5154 1.1621 16 7 3.9636 1.6748 1.7995 17 6 5.0745 2.1147 0.9520 18 6 6.3733 1.9425 1.6967 19 6 7.1943 0.8757 1.6180 20 6 8.2901 1.1233 2.4682 21 6 8.0929 2.3283 3.0404 22 7 6.9179 2.8360 2.5709 23 6 6.3370 4.1282 2.9434 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3207 1.8655 -1.9177 30 1 2.1664 3.1807 -1.0671 31 1 5.1667 2.3072 -4.5836 32 1 4.1370 1.1258 2.5802 33 1 5.0958 1.5163 0.0413 34 1 4.9404 3.1652 0.6935 35 1 7.0412 -0.0054 1.0125 36 1 9.1314 0.4666 2.6343 37 1 8.7522 2.8086 3.7482 38 1 5.6886 3.9988 3.8100 39 1 7.1355 4.8284 3.1885 40 1 5.7545 4.5189 2.1090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337088778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:45 Heat of formation + Delta-G solvation = -23.977733 kcal Electronic energy + Delta-G solvation = -23721.172548 eV Core-core repulsion = 20277.965781 eV Total energy + Delta-G solvation = -3443.206767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 5.08 seconds Orbital eigenvalues (eV) -40.99455 -36.77576 -36.19666 -35.32836 -34.82351 -32.66941 -32.65353 -30.23316 -29.22493 -27.16354 -26.20624 -24.67737 -22.94410 -21.56363 -20.36469 -19.23229 -18.80195 -17.48626 -17.05327 -16.90636 -16.44820 -15.74259 -15.17288 -14.73384 -14.26460 -13.99920 -13.90071 -13.43958 -13.30089 -12.96062 -12.69915 -12.46605 -12.39372 -12.17724 -12.06893 -11.97281 -11.87977 -11.82583 -11.55103 -11.44313 -11.19474 -11.12424 -10.98483 -10.51464 -10.40437 -10.15377 -9.65636 -9.05165 -8.67141 -8.39347 -8.17047 -7.85024 -6.18044 -4.19048 1.16716 2.40480 3.13418 3.19881 3.24856 3.31860 3.35117 3.56855 4.09275 4.33112 4.86574 4.89331 5.07380 5.14709 5.23081 5.26695 5.33858 5.48265 5.63914 5.68387 5.74227 5.82681 5.88314 6.01172 6.14518 6.26289 6.41355 6.48854 6.53708 6.60502 6.62440 6.85355 7.10749 7.21970 7.26347 7.44593 7.46728 7.54846 7.55835 8.38126 8.83631 9.42450 10.93449 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.006573 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.210042 B = 4258.806480 C = 5454.724568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 N -0.986 5.986 4 C 0.212 3.788 5 C -0.544 4.544 6 H 0.085 0.915 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.867 3.133 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.787 3.213 14 O -0.997 6.997 15 O -0.984 6.984 16 N -1.127 6.127 17 C 0.188 3.812 18 C 0.014 3.986 19 C -0.179 4.179 20 C -0.204 4.204 21 C -0.019 4.019 22 N -0.444 5.444 23 C 0.068 3.932 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.265 0.735 32 H 0.409 0.591 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.157 0.843 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -0.459 11.335 11.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.004 3.996 3 N -0.827 5.827 4 C 0.088 3.912 5 C -0.583 4.583 6 H 0.102 0.898 7 C -0.126 4.126 8 N -0.527 5.527 9 Si 0.694 3.306 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.188 1.188 13 S 2.795 3.205 14 O -0.981 6.981 15 O -0.968 6.968 16 N -0.886 5.886 17 C 0.062 3.938 18 C -0.099 4.099 19 C -0.205 4.205 20 C -0.229 4.229 21 C -0.150 4.150 22 N -0.120 5.120 23 C -0.074 4.074 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.241 0.759 33 H 0.131 0.869 34 H 0.099 0.901 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.175 0.825 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.737 0.638 11.580 11.621 hybrid contribution 0.010 0.201 -0.487 0.527 sum 0.747 0.839 11.093 11.150 Atomic orbital electron populations 1.22222 0.96944 1.01549 1.02321 1.20998 0.93516 0.82436 1.02608 1.57486 1.78805 1.23174 1.23203 1.19608 0.98259 0.92249 0.81066 1.21447 1.04431 1.27003 1.05383 0.89754 1.24837 0.94859 0.96085 0.96773 1.69885 1.22322 1.43240 1.17268 0.86981 0.82088 0.82553 0.78963 1.19825 1.21084 1.18842 1.01672 0.72633 0.73626 0.72610 1.93561 1.65619 1.79612 1.59276 1.93553 1.86741 1.31128 1.85337 1.56064 1.24517 1.69104 1.38920 1.19867 0.79919 1.01815 0.92193 1.20448 0.98398 0.92041 0.98964 1.20791 0.96065 0.99266 1.04340 1.20847 1.01068 0.97712 1.03235 1.21736 0.90641 0.97343 1.05247 1.43967 1.18108 1.15639 1.34283 1.22042 0.99704 0.83174 1.02457 0.92466 0.92294 0.92193 0.89703 0.91784 0.94660 0.93800 0.92459 0.75856 0.86926 0.90094 0.84452 0.84952 0.82517 0.91133 0.90086 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.13 2.16 6.03 -4.04 -0.02 2.14 16 3 N -0.99 -19.01 2.84 -115.66 -0.33 -19.34 16 4 C 0.21 4.73 4.52 -5.19 -0.02 4.71 16 5 C -0.54 -13.64 9.28 -34.44 -0.32 -13.96 16 6 H 0.08 2.21 6.40 -52.49 -0.34 1.87 16 7 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.89 -25.12 13.96 55.43 0.77 -24.35 16 9 Si 0.87 20.29 27.47 -169.99 -4.67 15.62 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.91 6.53 56.52 0.37 -5.54 16 13 S 2.79 52.19 6.08 -107.50 -0.65 51.53 16 14 O -1.00 -19.44 17.17 -57.17 -0.98 -20.42 16 15 O -0.98 -21.10 15.96 -57.17 -0.91 -22.01 16 16 N -1.13 -18.23 6.04 -11.66 -0.07 -18.30 16 17 C 0.19 3.28 6.34 -5.19 -0.03 3.25 16 18 C 0.01 0.23 6.29 -81.79 -0.51 -0.29 16 19 C -0.18 -2.82 10.76 -39.78 -0.43 -3.25 16 20 C -0.20 -2.82 10.86 -39.78 -0.43 -3.25 16 21 C -0.02 -0.25 11.43 -16.75 -0.19 -0.44 16 22 N -0.44 -6.24 3.15 -119.90 -0.38 -6.62 16 23 C 0.07 0.77 10.92 59.85 0.65 1.43 16 24 H 0.06 0.89 7.97 -51.93 -0.41 0.47 16 25 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 1.43 8.11 -51.93 -0.42 1.00 16 28 H 0.06 0.95 7.78 -51.93 -0.40 0.54 16 29 H 0.04 0.78 7.14 -51.93 -0.37 0.41 16 30 H 0.04 1.03 6.23 -51.93 -0.32 0.70 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.41 5.80 8.65 -34.47 -0.30 5.50 16 33 H 0.11 2.22 5.80 -51.93 -0.30 1.92 16 34 H 0.08 1.50 6.76 -51.93 -0.35 1.14 16 35 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 37 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.10 7.12 -51.93 -0.37 0.73 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -31.26 342.54 -8.80 -40.06 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.71 Total: 8.54 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -1.03 Total: -9.87 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: 0.00 Total: -68.61 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -1.89 Total: -42.43 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.67 Total: 15.62 kcal Atomic # 16 Polarization: 52.19 SS G_CDS: -0.65 Total: 51.53 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.26 -8.80 -40.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337088778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.084 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.08 seconds