Wall clock time and date at job start Tue Mar 31 2020 04:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47302 * 2 1 4 4 C 1.46497 * 119.99867 * 274.99894 * 3 2 1 5 5 C 1.50702 * 109.47312 * 279.16291 * 4 3 2 6 6 H 1.07996 * 119.99998 * 359.68872 * 5 4 3 7 7 C 1.37881 * 119.99995 * 179.68739 * 5 4 3 8 8 N 1.31513 * 119.99884 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00014 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46760 * 90.00010 * 9 7 5 11 11 H 1.48494 * 109.47222 * 209.99869 * 9 7 5 12 12 H 1.48498 * 109.47228 * 329.99945 * 9 7 5 13 13 S 1.65597 * 120.00079 * 95.00388 * 3 2 1 14 14 O 1.42098 * 106.40184 * 330.25621 * 13 3 2 15 15 O 1.42100 * 106.40019 * 197.34245 * 13 3 2 16 16 N 1.65597 * 107.22241 * 83.80070 * 13 3 2 17 17 C 1.46502 * 120.00128 * 66.27954 * 16 13 3 18 18 C 1.50700 * 109.46801 * 163.30113 * 17 16 13 19 19 C 1.34846 * 125.88968 * 94.69555 * 18 17 16 20 20 C 1.40892 * 107.41519 * 179.88289 * 19 18 17 21 21 C 1.34848 * 107.41653 * 0.37546 * 20 19 18 22 22 N 1.36332 * 108.22085 * 359.77327 * 21 20 19 23 23 C 1.46497 * 125.63917 * 180.02562 * 22 21 20 24 24 H 1.09004 * 109.46874 * 300.00316 * 1 2 3 25 25 H 1.09000 * 109.47194 * 59.99808 * 1 2 3 26 26 H 1.08998 * 109.47401 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46874 * 239.99684 * 2 1 3 28 28 H 1.09000 * 109.47194 * 120.00191 * 2 1 3 29 29 H 1.08998 * 109.47391 * 39.16191 * 4 3 2 30 30 H 1.09002 * 109.47225 * 159.16101 * 4 3 2 31 31 H 0.97000 * 120.00039 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99917 * 246.01126 * 16 13 3 33 33 H 1.08990 * 109.47175 * 283.30323 * 17 16 13 34 34 H 1.09005 * 109.46890 * 43.30320 * 17 16 13 35 35 H 1.07999 * 126.29300 * 0.02562 * 19 18 17 36 36 H 1.08007 * 126.28775 * 180.13429 * 20 19 18 37 37 H 1.08002 * 125.88899 * 179.80715 * 21 20 19 38 38 H 1.09002 * 109.47261 * 269.97706 * 23 22 21 39 39 H 1.08998 * 109.47139 * 29.96839 * 23 22 21 40 40 H 1.09002 * 109.47587 * 149.97218 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4491 1.7108 -1.9322 6 1 4.1025 0.9921 -1.4601 7 6 3.7959 2.2643 -3.1465 8 7 4.9225 1.9175 -3.7295 9 14 2.6653 3.5068 -3.9635 10 1 3.0289 4.8756 -3.5168 11 1 2.8099 3.4128 -5.4384 12 1 1.2584 3.2199 -3.5849 13 16 2.4123 2.1201 1.4286 14 8 1.5796 1.5402 2.4233 15 8 2.4483 3.5154 1.1621 16 7 3.9636 1.6748 1.7995 17 6 5.0745 2.1147 0.9520 18 6 6.3733 1.9425 1.6967 19 6 7.1943 0.8757 1.6180 20 6 8.2901 1.1233 2.4682 21 6 8.0929 2.3283 3.0404 22 7 6.9179 2.8360 2.5709 23 6 6.3370 4.1282 2.9434 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3207 1.8655 -1.9177 30 1 2.1664 3.1807 -1.0671 31 1 5.1667 2.3072 -4.5836 32 1 4.1370 1.1258 2.5802 33 1 5.0958 1.5163 0.0413 34 1 4.9404 3.1652 0.6935 35 1 7.0412 -0.0054 1.0125 36 1 9.1314 0.4666 2.6343 37 1 8.7522 2.8086 3.7482 38 1 5.6886 3.9988 3.8100 39 1 7.1355 4.8284 3.1885 40 1 5.7545 4.5189 2.1090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337088778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:44 Heat of formation + Delta-G solvation = -45.954701 kcal Electronic energy + Delta-G solvation = -23722.125541 eV Core-core repulsion = 20277.965781 eV Total energy + Delta-G solvation = -3444.159760 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -42.09832 -38.36945 -37.76516 -36.93775 -36.21683 -34.61234 -33.69195 -31.78062 -30.44913 -28.90918 -27.18621 -25.98026 -24.58231 -23.15881 -21.45377 -20.54493 -20.18599 -19.08283 -18.69643 -18.50686 -17.81279 -17.20251 -16.51692 -16.11492 -15.94813 -15.39247 -15.22783 -14.77831 -14.70017 -14.33736 -14.11091 -14.00747 -13.76592 -13.65978 -13.50532 -13.23288 -13.18275 -13.09335 -13.03010 -12.87339 -12.75122 -12.59551 -12.47730 -12.18288 -12.09508 -11.68829 -11.55081 -10.72221 -10.52789 -9.79330 -9.48536 -8.99801 -8.23175 -6.26532 -0.35890 1.24378 1.38529 1.42413 1.48806 1.94885 2.11183 2.19157 2.37983 2.59059 3.11399 3.38154 3.78916 3.93040 4.01459 4.17204 4.31975 4.37949 4.41421 4.47118 4.59755 4.66968 4.72362 4.77202 4.84959 4.95370 4.98295 5.01808 5.06378 5.40058 5.41441 5.44496 5.46960 5.51893 5.79027 6.07669 6.12686 6.30259 6.36639 6.53588 6.79215 7.37327 8.90771 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.006573 C = 0.005132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.210042 B = 4258.806480 C = 5454.724568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.990 5.990 4 C 0.218 3.782 5 C -0.532 4.532 6 H 0.064 0.936 7 C 0.027 3.973 8 N -0.933 5.933 9 Si 0.916 3.084 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.245 1.245 13 S 2.800 3.200 14 O -1.000 7.000 15 O -1.010 7.010 16 N -1.112 6.112 17 C 0.201 3.799 18 C -0.013 4.013 19 C -0.195 4.195 20 C -0.220 4.220 21 C -0.004 4.004 22 N -0.447 5.447 23 C 0.061 3.939 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.036 0.964 31 H 0.265 0.735 32 H 0.420 0.580 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.153 0.847 37 H 0.198 0.802 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.160 -0.162 12.863 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.005 4.005 3 N -0.831 5.831 4 C 0.094 3.906 5 C -0.571 4.571 6 H 0.082 0.918 7 C -0.173 4.173 8 N -0.572 5.572 9 Si 0.741 3.259 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.168 1.168 13 S 2.808 3.192 14 O -0.984 6.984 15 O -0.994 6.994 16 N -0.873 5.873 17 C 0.075 3.925 18 C -0.126 4.126 19 C -0.221 4.221 20 C -0.244 4.244 21 C -0.135 4.135 22 N -0.122 5.122 23 C -0.080 4.080 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.255 0.745 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.170 0.830 37 H 0.215 0.785 38 H 0.101 0.899 39 H 0.132 0.868 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.465 0.918 13.136 13.177 hybrid contribution 0.157 0.044 -0.864 0.879 sum 0.623 0.963 12.273 12.326 Atomic orbital electron populations 1.22199 0.95345 1.03349 1.01767 1.21259 0.94905 0.80990 1.03295 1.57463 1.79246 1.24242 1.22102 1.19367 0.96930 0.92096 0.82249 1.21646 1.04976 1.25559 1.04916 0.91797 1.25537 0.96077 0.97972 0.97694 1.70007 1.24239 1.45088 1.17902 0.86176 0.81411 0.80237 0.78065 1.19952 1.20887 1.16843 1.01182 0.72802 0.72944 0.72267 1.93550 1.66128 1.79528 1.59237 1.93516 1.87236 1.32983 1.85678 1.55771 1.23423 1.69054 1.39073 1.19496 0.81237 1.00116 0.91697 1.20206 0.98248 0.93374 1.00765 1.20964 0.97114 0.99142 1.04869 1.21143 1.01194 0.98855 1.03185 1.22391 0.89918 0.96748 1.04393 1.44168 1.18403 1.16038 1.33637 1.22267 1.01001 0.82606 1.02156 0.93097 0.92702 0.89282 0.90189 0.90007 0.93793 0.94564 0.92567 0.74530 0.89761 0.91607 0.85218 0.82956 0.78545 0.89926 0.86806 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 10.24 71.98 0.74 -3.95 16 2 C 0.12 3.87 6.03 86.38 0.52 4.39 16 3 N -0.99 -37.81 2.84 -519.85 -1.47 -39.29 16 4 C 0.22 9.70 4.52 85.63 0.39 10.09 16 5 C -0.53 -27.16 9.28 25.60 0.24 -26.92 16 6 H 0.06 3.48 6.40 -2.91 -0.02 3.46 16 7 C 0.03 1.44 5.47 84.66 0.46 1.90 16 8 N -0.93 -54.04 13.96 21.45 0.30 -53.74 16 9 Si 0.92 41.60 27.47 68.60 1.88 43.49 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.24 -10.28 6.53 99.48 0.65 -9.63 16 13 S 2.80 103.88 6.08 -56.49 -0.34 103.54 16 14 O -1.00 -37.79 17.17 -128.00 -2.20 -39.99 16 15 O -1.01 -43.34 15.96 -128.00 -2.04 -45.38 16 16 N -1.11 -36.10 6.04 -190.79 -1.15 -37.25 16 17 C 0.20 7.25 6.34 85.63 0.54 7.79 16 18 C -0.01 -0.42 6.29 41.08 0.26 -0.17 16 19 C -0.19 -6.17 10.76 22.14 0.24 -5.93 16 20 C -0.22 -5.72 10.86 22.14 0.24 -5.48 16 21 C 0.00 -0.08 11.43 83.21 0.95 0.87 16 22 N -0.45 -11.89 3.15 -533.26 -1.68 -13.57 16 23 C 0.06 1.27 10.92 127.77 1.39 2.66 16 24 H 0.05 1.48 7.97 -2.39 -0.02 1.46 16 25 H 0.05 1.56 8.11 -2.39 -0.02 1.54 16 26 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 27 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 28 H 0.08 2.31 7.78 -2.39 -0.02 2.29 16 29 H 0.04 1.89 7.14 -2.39 -0.02 1.87 16 30 H 0.04 1.69 6.23 -2.39 -0.01 1.67 16 31 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.42 11.72 8.65 -96.75 -0.84 10.88 16 33 H 0.08 3.52 5.80 -2.39 -0.01 3.51 16 34 H 0.07 2.54 6.76 -2.38 -0.02 2.53 16 35 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 37 H 0.20 2.82 8.06 -2.91 -0.02 2.80 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 1.76 7.12 -2.39 -0.02 1.75 16 Total: -1.00 -67.13 342.54 -0.58 -67.71 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.15 Total: 29.22 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 5.97 Total: -14.74 kcal Atomic # 7 Polarization: -139.84 SS G_CDS: -4.01 Total: -143.84 kcal Atomic # 8 Polarization: -81.13 SS G_CDS: -4.24 Total: -85.37 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 1.88 Total: 43.49 kcal Atomic # 16 Polarization: 103.88 SS G_CDS: -0.34 Total: 103.54 kcal Total: -67.13 -0.58 -67.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337088778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.753 kcal (2) G-P(sol) polarization free energy of solvation -67.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds