Wall clock time and date at job start Tue Mar 31 2020 03:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47247 * 2 1 4 4 C 1.50702 * 109.47055 * 119.99411 * 2 1 3 5 5 H 1.08004 * 119.99594 * 120.00073 * 4 2 1 6 6 C 1.37875 * 119.99976 * 300.00073 * 4 2 1 7 7 N 1.31506 * 120.00076 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99838 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47037 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47143 * 120.00044 * 8 6 4 11 11 H 1.48498 * 109.47179 * 239.99962 * 8 6 4 12 12 N 1.46503 * 109.47370 * 239.99854 * 2 1 3 13 13 C 1.34772 * 120.00493 * 84.99923 * 12 2 1 14 14 O 1.21691 * 119.99425 * 0.02562 * 13 12 2 15 15 C 1.46763 * 120.00200 * 180.02562 * 13 12 2 16 16 C 1.41527 * 126.50748 * 359.97369 * 15 13 12 17 17 N 1.30301 * 108.25436 * 179.97438 * 16 15 13 18 18 N 1.39895 * 109.25447 * 0.02562 * 17 16 15 19 19 C 1.39728 * 125.77791 * 180.02562 * 18 17 16 20 20 C 1.38977 * 119.68831 * 335.01863 * 19 18 17 21 21 C 1.38400 * 119.10226 * 180.28211 * 20 19 18 22 22 C 1.38805 * 118.48864 * 359.47761 * 21 20 19 23 23 C 1.38112 * 119.29806 * 0.47859 * 22 21 20 24 24 N 1.31904 * 120.84343 * 359.79122 * 23 22 21 25 25 C 1.35244 * 108.44774 * 0.25761 * 18 17 16 26 26 N 1.37924 * 126.47360 * 179.73860 * 25 18 17 27 27 H 1.09003 * 109.46922 * 60.00427 * 1 2 3 28 28 H 1.08997 * 109.46990 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47275 * 300.00803 * 1 2 3 30 30 H 0.97002 * 120.00296 * 179.97438 * 7 6 4 31 31 H 0.97003 * 119.99777 * 265.00039 * 12 2 1 32 32 H 1.07995 * 125.87369 * 0.02562 * 16 15 13 33 33 H 1.08002 * 120.44460 * 359.97438 * 20 19 18 34 34 H 1.08004 * 120.75128 * 179.72396 * 21 20 19 35 35 H 1.07994 * 120.35355 * 180.25284 * 22 21 20 36 36 H 1.08007 * 119.57963 * 179.76542 * 23 22 21 37 37 H 0.97006 * 120.00191 * 0.02562 * 26 25 18 38 38 H 0.96994 * 120.00647 * 180.02562 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4827 7 7 0.9435 0.8304 2.6033 8 14 2.3213 -1.1200 4.0080 9 1 3.1463 -2.2867 3.6039 10 1 3.1465 -0.1870 4.8165 11 1 1.1660 -1.5862 4.8162 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8581 1.1624 -2.4117 15 6 2.6359 -0.7105 -3.5555 16 6 3.0100 -2.0723 -3.6477 17 7 3.3879 -2.3098 -4.8718 18 7 3.2810 -1.1350 -5.6238 19 6 3.5967 -1.0006 -6.9783 20 6 4.5125 -1.8683 -7.5611 21 6 4.8207 -1.7205 -8.9022 22 6 4.1909 -0.7123 -9.6190 23 6 3.2901 0.1132 -8.9752 24 7 3.0206 -0.0485 -7.6942 25 6 2.8253 -0.1502 -4.8166 26 7 2.5892 1.1605 -5.1753 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 0.7089 1.1617 3.4843 31 1 2.2491 -1.6318 -1.1525 32 1 2.9856 -2.7912 -2.8421 33 1 4.9812 -2.6444 -6.9741 34 1 5.5319 -2.3772 -9.3811 35 1 4.4058 -0.5726 -10.6681 36 1 2.8003 0.9015 -9.5277 37 1 2.7514 1.4507 -6.0866 38 1 2.2608 1.7921 -4.5165 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339507134.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:41 Heat of formation + Delta-G solvation = 59.766009 kcal Electronic energy + Delta-G solvation = -23377.503794 eV Core-core repulsion = 19834.777227 eV Total energy + Delta-G solvation = -3542.726566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.77792 -40.97877 -39.90401 -36.69787 -35.91635 -34.56616 -34.15127 -33.49728 -31.33322 -30.38688 -29.43505 -27.28449 -25.38166 -24.88142 -23.76082 -22.52566 -21.78145 -20.98783 -19.80758 -18.73632 -17.76672 -17.41282 -17.32181 -17.12329 -16.92118 -16.49970 -16.31378 -15.82098 -15.50206 -15.29060 -14.71619 -14.64143 -14.41392 -14.15926 -14.11544 -13.62741 -12.98564 -12.92730 -12.82469 -12.68849 -12.37973 -12.22387 -12.15577 -12.03846 -11.39068 -11.02716 -10.98765 -10.79487 -10.68055 -10.53084 -9.73121 -9.44838 -8.90409 -8.12671 -6.29229 -0.30080 0.17436 0.83058 0.96245 1.19983 1.47623 1.48477 1.60894 2.41056 2.56686 2.65586 2.73335 2.82663 3.18012 3.27945 3.51527 3.92439 3.98020 4.02924 4.15726 4.23488 4.32714 4.60271 4.72977 4.84299 4.97707 5.00129 5.16833 5.17539 5.28850 5.41422 5.51812 5.68628 5.73723 5.79588 5.99869 6.13122 6.17919 6.31805 6.59825 6.79295 6.89442 7.12600 7.38355 7.68546 8.94112 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.036741 B = 0.002916 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.913407 B = 9600.306688 C =10130.983325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.274 3.726 3 H -0.001 1.001 4 C -0.543 4.543 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.700 5.700 13 C 0.589 3.411 14 O -0.615 6.615 15 C -0.389 4.389 16 C 0.140 3.860 17 N -0.310 5.310 18 N -0.353 5.353 19 C 0.331 3.669 20 C -0.168 4.168 21 C -0.046 4.046 22 C -0.168 4.168 23 C 0.122 3.878 24 N -0.540 5.540 25 C 0.444 3.556 26 N -0.805 5.805 27 H 0.010 0.990 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.264 0.736 31 H 0.403 0.597 32 H 0.227 0.773 33 H 0.145 0.855 34 H 0.179 0.821 35 H 0.183 0.817 36 H 0.196 0.804 37 H 0.416 0.584 38 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 -6.307 -25.933 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.171 3.829 3 H 0.017 0.983 4 C -0.581 4.581 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.182 1.182 10 H -0.211 1.211 11 H -0.205 1.205 12 N -0.348 5.348 13 C 0.379 3.621 14 O -0.500 6.500 15 C -0.409 4.409 16 C -0.051 4.051 17 N -0.127 5.127 18 N -0.137 5.137 19 C 0.107 3.893 20 C -0.191 4.191 21 C -0.072 4.072 22 C -0.188 4.188 23 C -0.036 4.036 24 N -0.255 5.255 25 C 0.209 3.791 26 N -0.354 5.354 27 H 0.029 0.971 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.244 0.756 33 H 0.162 0.838 34 H 0.196 0.804 35 H 0.200 0.800 36 H 0.213 0.787 37 H 0.250 0.750 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 7.874 -5.697 -26.252 27.993 hybrid contribution 0.151 0.104 1.322 1.335 sum 8.025 -5.593 -24.929 26.780 Atomic orbital electron populations 1.21901 0.98497 0.99387 0.99421 1.18310 0.90941 0.91933 0.81725 0.98297 1.21602 1.32276 1.13478 0.90731 0.90703 1.25803 0.94960 0.95625 1.02319 1.70066 1.37227 1.24046 1.24428 0.85289 0.78047 0.78547 0.78391 1.18224 1.21115 1.20499 1.45897 1.65745 1.13986 1.09156 1.17302 0.76504 0.85529 0.82782 1.90597 1.55734 1.17689 1.85949 1.19403 1.31201 0.96859 0.93410 1.24427 0.91345 0.94317 0.94996 1.77148 1.29519 1.01437 1.04597 1.45420 1.54899 1.06855 1.06534 1.18100 0.94504 0.95425 0.81296 1.21825 0.98326 1.01103 0.97826 1.22015 0.97068 0.96662 0.91458 1.22633 0.97246 0.95407 1.03557 1.23224 0.94639 0.98591 0.87105 1.66753 1.26162 1.22017 1.10593 1.18355 0.88216 0.83598 0.88940 1.42044 1.71106 1.05482 1.16796 0.97057 0.94174 0.91502 0.92654 0.76214 0.75648 0.83756 0.80353 0.79993 0.78688 0.74952 0.73912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.00 9.26 71.98 0.67 -6.33 16 2 C 0.27 14.70 2.56 44.24 0.11 14.81 16 3 H 0.00 -0.06 7.58 -2.38 -0.02 -0.07 16 4 C -0.54 -29.26 8.73 25.60 0.22 -29.04 16 5 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 8 Si 0.97 42.61 29.54 68.60 2.03 44.64 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 12 N -0.70 -30.91 5.06 -449.98 -2.28 -33.18 16 13 C 0.59 26.00 7.76 86.47 0.67 26.67 16 14 O -0.61 -31.11 14.80 -4.32 -0.06 -31.18 16 15 C -0.39 -14.12 6.15 -19.99 -0.12 -14.24 16 16 C 0.14 4.11 11.49 85.73 0.99 5.10 16 17 N -0.31 -9.22 11.97 -56.19 -0.67 -9.89 16 18 N -0.35 -10.72 3.75 -188.94 -0.71 -11.43 16 19 C 0.33 8.24 7.37 132.80 0.98 9.21 16 20 C -0.17 -3.10 9.73 22.49 0.22 -2.88 16 21 C -0.05 -0.46 10.17 22.44 0.23 -0.23 16 22 C -0.17 -1.27 10.11 22.38 0.23 -1.04 16 23 C 0.12 1.49 11.18 84.65 0.95 2.44 16 24 N -0.54 -11.63 8.10 -192.83 -1.56 -13.19 16 25 C 0.44 15.03 7.87 132.59 1.04 16.07 16 26 N -0.81 -24.49 8.95 -54.40 -0.49 -24.97 16 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 30 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.40 14.88 7.48 -92.71 -0.69 14.19 16 32 H 0.23 4.87 7.49 -2.91 -0.02 4.85 16 33 H 0.14 2.67 7.89 -2.91 -0.02 2.65 16 34 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 35 H 0.18 -0.08 8.06 -2.91 -0.02 -0.10 16 36 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 37 H 0.42 10.65 6.86 -92.70 -0.64 10.01 16 38 H 0.43 14.09 7.01 -92.71 -0.65 13.44 16 Total: -1.00 -75.99 329.37 2.29 -73.70 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -0.84 Total: 37.17 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 6.63 Total: 21.67 kcal Atomic # 7 Polarization: -140.55 SS G_CDS: -5.46 Total: -146.01 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.06 Total: -31.18 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -75.99 2.29 -73.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339507134.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.469 kcal (2) G-P(sol) polarization free energy of solvation -75.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds