Wall clock time and date at job start Tue Mar 31 2020 03:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39874 * 125.89865 * 2 1 4 4 C 1.35312 * 107.91868 * 180.14258 * 3 2 1 5 5 C 1.50703 * 126.12762 * 179.90411 * 4 3 2 6 6 N 1.46498 * 109.47212 * 94.68080 * 5 4 3 7 7 S 1.65602 * 119.99612 * 164.72359 * 6 5 4 8 8 O 1.42109 * 104.27511 * 181.34803 * 7 6 5 9 9 O 1.42098 * 104.28120 * 309.20801 * 7 6 5 10 10 C 1.81394 * 104.44973 * 65.28269 * 7 6 5 11 11 C 1.53003 * 109.47387 * 179.97438 * 10 7 6 12 12 C 1.53002 * 109.47130 * 179.97438 * 11 10 7 13 13 C 1.50692 * 109.47012 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00112 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00231 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99857 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00269 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47241 * 60.00170 * 17 15 13 19 19 H 1.48497 * 109.47563 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47390 * 300.00100 * 17 15 13 21 21 N 1.34944 * 107.74959 * 359.63355 * 4 3 2 22 22 C 1.46507 * 126.04158 * 180.20818 * 21 4 3 23 23 N 1.30842 * 125.90056 * 179.73062 * 2 1 3 24 24 H 1.09001 * 109.47233 * 270.24071 * 1 2 3 25 25 H 1.08997 * 109.46714 * 30.24340 * 1 2 3 26 26 H 1.08999 * 109.46717 * 150.24258 * 1 2 3 27 27 H 1.07997 * 126.04154 * 0.02562 * 3 2 1 28 28 H 1.08996 * 109.47013 * 334.68386 * 5 4 3 29 29 H 1.08999 * 109.47128 * 214.68599 * 5 4 3 30 30 H 0.97001 * 120.00384 * 345.00836 * 6 5 4 31 31 H 1.09009 * 109.47044 * 299.99503 * 10 7 6 32 32 H 1.09001 * 109.47747 * 59.99183 * 10 7 6 33 33 H 1.08994 * 109.46789 * 299.99279 * 11 10 7 34 34 H 1.08993 * 109.47045 * 59.99537 * 11 10 7 35 35 H 1.09003 * 109.47270 * 300.00013 * 12 11 10 36 36 H 1.09000 * 109.46896 * 60.00012 * 12 11 10 37 37 H 0.96993 * 120.00008 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.46573 * 90.00274 * 22 21 4 39 39 H 1.09001 * 109.47244 * 209.99910 * 22 21 4 40 40 H 1.08994 * 109.46810 * 330.00021 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6142 0.7154 -0.0032 5 6 4.8351 1.5989 -0.0064 6 7 5.3003 1.7941 1.3690 7 16 6.8174 2.3944 1.6525 8 8 6.9270 2.4150 3.0692 9 8 7.6709 1.5771 0.8635 10 6 6.7662 4.0837 0.9936 11 6 8.1267 4.7528 1.1990 12 6 8.0836 6.1774 0.6426 13 6 9.4234 6.8366 0.8454 14 1 10.2257 6.2936 1.3230 15 6 9.6256 8.1326 0.4204 16 7 8.6489 8.7936 -0.1616 17 14 11.2866 8.9495 0.6712 18 1 12.3332 8.1716 -0.0394 19 1 11.2453 10.3318 0.1302 20 1 11.6024 8.9943 2.1216 21 7 3.6088 -0.6340 0.0031 22 6 4.7900 -1.5008 0.0067 23 7 2.2743 -1.0599 0.0050 24 1 -0.3634 0.0043 1.0277 25 1 -0.3632 0.8878 -0.5176 26 1 -0.3633 -0.8922 -0.5101 27 1 1.9924 2.1598 0.0004 28 1 4.5837 2.5644 -0.4453 29 1 5.6234 1.1273 -0.5932 30 1 4.7213 1.5678 2.1136 31 1 6.5337 4.0516 -0.0709 32 1 5.9984 4.6544 1.5160 33 1 8.3587 4.7850 2.2634 34 1 8.8947 4.1822 0.6768 35 1 7.8517 6.1449 -0.4220 36 1 7.3155 6.7482 1.1645 37 1 8.7910 9.7054 -0.4602 38 1 5.0832 -1.7109 1.0352 39 1 4.5563 -2.4357 -0.5027 40 1 5.6092 -1.0006 -0.5098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341088127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:11 Heat of formation + Delta-G solvation = -40.886910 kcal Electronic energy + Delta-G solvation = -21932.433140 eV Core-core repulsion = 18488.493136 eV Total energy + Delta-G solvation = -3443.940004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.29462 -38.22628 -37.09754 -36.61301 -36.43905 -34.69344 -34.14226 -31.54169 -30.28260 -29.63115 -26.89429 -26.19750 -25.60247 -22.41195 -21.46334 -20.65550 -20.32860 -18.76008 -18.54221 -17.90575 -17.15826 -17.06765 -16.58717 -16.45970 -16.04984 -15.56124 -15.33483 -14.81687 -14.47244 -14.36029 -14.21224 -14.03340 -13.76454 -13.48880 -13.40098 -13.21995 -13.18191 -13.13681 -12.96345 -12.91501 -12.72047 -12.63767 -12.58637 -12.14806 -11.71146 -11.59914 -11.36627 -11.13476 -10.55226 -10.50372 -10.18219 -9.50448 -8.21239 -6.31761 -0.78695 0.73481 1.41476 1.43402 1.51330 1.55070 1.65405 1.96029 2.40949 2.74412 3.12518 3.19245 3.39294 3.60617 3.76416 3.94557 4.00774 4.21370 4.31598 4.33946 4.43033 4.48653 4.61017 4.68530 4.71402 4.75872 4.85232 4.91949 5.00905 5.09774 5.10169 5.26314 5.47989 5.66559 5.75266 5.81919 5.93540 6.01633 6.21886 6.72940 6.84158 7.37451 8.89906 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.002780 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.450852 B =10068.020702 C =10669.499528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.057 3.943 3 C -0.258 4.258 4 C 0.069 3.931 5 C 0.172 3.828 6 N -1.108 6.108 7 S 2.634 3.366 8 O -0.992 6.992 9 O -0.985 6.985 10 C -0.608 4.608 11 C -0.108 4.108 12 C 0.031 3.969 13 C -0.553 4.553 14 H 0.060 0.940 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.960 3.040 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.268 1.268 21 N -0.373 5.373 22 C 0.087 3.913 23 N -0.328 5.328 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.171 0.829 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.425 0.575 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.006 0.994 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.679 -17.522 -1.044 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 C -0.289 4.289 4 C -0.060 4.060 5 C 0.045 3.955 6 N -0.869 5.869 7 S 2.729 3.271 8 O -0.982 6.982 9 O -0.974 6.974 10 C -0.739 4.739 11 C -0.147 4.147 12 C -0.008 4.008 13 C -0.591 4.591 14 H 0.078 0.922 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.785 3.215 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.193 1.193 21 N -0.156 5.156 22 C -0.053 4.053 23 N -0.152 5.152 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.188 0.812 28 H 0.141 0.859 29 H 0.117 0.883 30 H 0.260 0.740 31 H 0.170 0.830 32 H 0.167 0.833 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.024 0.976 36 H 0.021 0.979 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.714 -19.200 -0.856 23.610 hybrid contribution 0.274 1.811 0.083 1.834 sum -13.440 -17.388 -0.772 21.990 Atomic orbital electron populations 1.20289 0.84559 1.04217 1.03816 1.22930 0.98487 0.90573 0.98832 1.21561 0.90548 1.00985 1.15773 1.21127 0.97105 0.84576 1.03164 1.20085 0.92672 0.99860 0.82852 1.55418 1.36100 1.81721 1.13681 1.04171 0.72675 0.76994 0.73224 1.93549 1.85519 1.87968 1.31179 1.93533 1.65728 1.65787 1.72381 1.30494 1.06693 1.21581 1.15119 1.21319 0.93168 0.98575 1.01645 1.18963 0.95702 0.90667 0.95432 1.21732 0.99209 0.99023 1.39142 0.92220 1.25905 1.00742 0.98111 0.94725 1.70052 1.33951 1.11854 1.41049 0.85572 0.79643 0.77433 0.78868 1.19240 1.20724 1.19340 1.48694 1.05704 1.04773 1.56382 1.22148 0.83484 0.95345 1.04347 1.77289 0.87106 1.24054 1.26745 0.89652 0.88507 0.90994 0.81176 0.85883 0.88338 0.73968 0.82957 0.83335 0.91754 0.91339 0.97571 0.97871 0.92653 0.90226 0.88311 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.45 71.24 0.74 -0.10 16 2 C 0.06 1.09 7.22 43.10 0.31 1.40 16 3 C -0.26 -4.49 10.65 21.99 0.23 -4.26 16 4 C 0.07 1.25 6.33 41.41 0.26 1.52 16 5 C 0.17 2.56 6.31 85.63 0.54 3.10 16 6 N -1.11 -19.24 5.88 -190.79 -1.12 -20.36 16 7 S 2.63 65.65 5.46 -56.49 -0.31 65.34 16 8 O -0.99 -31.88 18.08 -127.65 -2.31 -34.18 16 9 O -0.98 -29.47 17.48 -127.65 -2.23 -31.70 16 10 C -0.61 -15.93 6.08 71.98 0.44 -15.50 16 11 C -0.11 -4.10 5.16 30.60 0.16 -3.95 16 12 C 0.03 1.52 4.97 29.85 0.15 1.67 16 13 C -0.55 -30.73 9.11 25.60 0.23 -30.50 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 15 C 0.00 0.20 5.46 84.66 0.46 0.66 16 16 N -0.93 -54.76 13.29 21.45 0.28 -54.47 16 17 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 N -0.37 -7.57 4.01 -356.02 -1.43 -9.00 16 22 C 0.09 1.31 11.27 127.77 1.44 2.75 16 23 N -0.33 -7.63 12.58 -47.38 -0.60 -8.22 16 24 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.39 6.78 -2.39 -0.02 1.38 16 30 H 0.42 6.74 8.61 -96.74 -0.83 5.91 16 31 H 0.15 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.15 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.30 7.15 -2.39 -0.02 1.28 16 Total: -1.00 -77.83 354.98 -0.51 -78.34 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.21 Total: 11.97 kcal Atomic # 6 Polarization: -48.17 SS G_CDS: 4.97 Total: -43.20 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -2.86 Total: -92.06 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: -4.54 Total: -65.89 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 65.65 SS G_CDS: -0.31 Total: 65.34 kcal Total: -77.83 -0.51 -78.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341088127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.451 kcal (2) G-P(sol) polarization free energy of solvation -77.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds