Wall clock time and date at job start Tue Mar 31 2020 04:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 111.00069 * 2 1 4 4 C 1.50702 * 109.46937 * 293.94996 * 3 2 1 5 5 O 1.21283 * 119.99970 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00074 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00092 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47090 * 179.97438 * 7 6 4 9 9 O 1.21290 * 119.99897 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99806 * 179.97438 * 8 7 6 11 11 C 1.37094 * 119.99982 * 179.97438 * 10 8 7 12 12 H 1.08005 * 119.99845 * 359.97438 * 11 10 8 13 13 C 1.38956 * 120.00406 * 180.02562 * 11 10 8 14 14 N 1.31407 * 119.99925 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 119.99541 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47456 * 90.00008 * 15 13 11 17 17 H 1.48502 * 109.47092 * 210.00140 * 15 13 11 18 18 H 1.48505 * 109.47549 * 329.99825 * 15 13 11 19 19 C 1.46902 * 110.99450 * 123.95232 * 2 1 3 20 20 H 1.08996 * 109.99260 * 295.77180 * 19 2 1 21 21 C 1.53861 * 109.97074 * 174.51082 * 19 2 1 22 22 C 1.54270 * 108.92350 * 193.38432 * 21 19 2 23 23 S 1.83096 * 104.65161 * 27.95028 * 22 21 19 24 24 C 1.55131 * 109.97655 * 57.04634 * 19 2 1 25 25 H 1.08994 * 109.47296 * 300.09398 * 1 2 3 26 26 H 1.09005 * 109.46552 * 60.09363 * 1 2 3 27 27 H 1.08995 * 109.47185 * 180.08760 * 1 2 3 28 28 H 1.08999 * 109.47364 * 53.95191 * 3 2 1 29 29 H 1.08995 * 109.47201 * 173.95390 * 3 2 1 30 30 H 0.96994 * 119.99908 * 359.97438 * 6 4 3 31 31 H 1.08999 * 109.46996 * 299.99837 * 7 6 4 32 32 H 1.08998 * 109.47564 * 59.99951 * 7 6 4 33 33 H 0.97001 * 120.00194 * 0.02562 * 10 8 7 34 34 H 0.97008 * 119.99755 * 180.02562 * 14 13 11 35 35 H 1.08996 * 109.61247 * 73.46261 * 21 19 2 36 36 H 1.09005 * 109.46294 * 313.21515 * 21 19 2 37 37 H 1.09005 * 110.40240 * 269.15789 * 22 21 19 38 38 H 1.09008 * 110.50062 * 146.79649 * 22 21 19 39 39 H 1.08996 * 110.86167 * 43.29655 * 24 19 2 40 40 H 1.08997 * 110.85482 * 279.64946 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 -1.2985 5 8 1.0049 1.4455 -2.1408 6 7 2.0190 3.3198 -1.5238 7 6 1.6701 3.9767 -2.7859 8 6 2.2103 5.3836 -2.7860 9 8 2.8265 5.7966 -1.8264 10 7 2.0095 6.1825 -3.8527 11 6 2.5004 7.4625 -3.8526 12 1 3.0477 7.8308 -2.9975 13 6 2.2929 8.2864 -4.9522 14 7 2.7640 9.5131 -4.9522 15 14 1.3445 7.6499 -6.4302 16 1 -0.1011 7.9398 -6.2531 17 1 1.8367 8.3205 -7.6604 18 1 1.5439 6.1834 -6.5524 19 6 1.9954 -0.7660 1.1377 20 1 1.7131 -0.2843 2.0738 21 6 3.5275 -0.8667 1.0396 22 6 4.0230 -1.9387 2.0322 23 16 2.6210 -3.1054 2.1919 24 6 1.4448 -2.2158 1.1005 25 1 -0.3633 0.5153 0.8891 26 1 -0.3632 0.5124 -0.8909 27 1 -0.3633 -1.0276 0.0016 28 1 1.5612 1.9274 0.8309 29 1 3.0798 1.3444 0.1082 30 1 2.5243 3.8010 -0.8501 31 1 2.1037 3.4206 -3.6170 32 1 0.5858 4.0043 -2.8936 33 1 1.5169 5.8520 -4.6203 34 1 2.6188 10.0884 -5.7197 35 1 3.9741 0.0961 1.2879 36 1 3.8087 -1.1496 0.0251 37 1 4.2526 -1.4862 2.9969 38 1 4.8999 -2.4504 1.6352 39 1 1.4760 -2.6171 0.0876 40 1 0.4333 -2.2573 1.5045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344155242.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:47 Heat of formation + Delta-G solvation = -57.735114 kcal Electronic energy + Delta-G solvation = -21940.240346 eV Core-core repulsion = 18495.569749 eV Total energy + Delta-G solvation = -3444.670597 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.07559 -38.72680 -37.91196 -34.62505 -34.03259 -33.76479 -31.85578 -30.38480 -28.70518 -27.41207 -25.77616 -24.19065 -23.25930 -20.66726 -20.21268 -19.66021 -18.68469 -17.52162 -17.05042 -16.60285 -15.95586 -15.68730 -15.45321 -15.09630 -14.90690 -14.62133 -14.39181 -14.19435 -13.80966 -13.39543 -13.15868 -12.95103 -12.74902 -12.56909 -12.51283 -12.37886 -12.22110 -11.94169 -11.62901 -11.47347 -11.33154 -11.26465 -10.68134 -10.42652 -10.10729 -9.76716 -9.74503 -8.96472 -8.83171 -8.67483 -8.35286 -8.06557 -6.45138 -3.97937 1.41020 1.93687 2.67431 2.95962 2.98965 3.01228 3.09731 3.50831 3.66630 3.99598 4.06422 4.30200 4.47856 4.49075 4.65243 4.70597 4.76525 4.95978 5.03286 5.09500 5.10196 5.23787 5.25634 5.30814 5.32668 5.43086 5.61480 5.64429 5.72401 5.75842 5.89744 6.50254 6.52359 6.64789 7.39328 7.66787 7.95544 8.30580 8.41250 8.77003 9.25038 9.58113 10.66903 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.040348 B = 0.002367 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.790519 B =11825.047575 C =12221.779405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.513 5.513 3 C 0.033 3.967 4 C 0.514 3.486 5 O -0.531 6.531 6 N -0.709 5.709 7 C 0.108 3.892 8 C 0.437 3.563 9 O -0.580 6.580 10 N -0.575 5.575 11 C -0.311 4.311 12 H 0.122 0.878 13 C 0.045 3.955 14 N -0.873 5.873 15 Si 0.879 3.121 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.267 1.267 19 C 0.078 3.922 20 H 0.060 0.940 21 C -0.129 4.129 22 C -0.069 4.069 23 S -0.294 6.294 24 C -0.061 4.061 25 H 0.023 0.977 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.411 0.589 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.374 0.626 34 H 0.276 0.724 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -21.142 10.958 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.237 5.237 3 C -0.098 4.098 4 C 0.299 3.701 5 O -0.408 6.408 6 N -0.364 5.364 7 C -0.020 4.020 8 C 0.223 3.777 9 O -0.465 6.465 10 N -0.213 5.213 11 C -0.440 4.440 12 H 0.139 0.861 13 C -0.159 4.159 14 N -0.512 5.512 15 Si 0.705 3.295 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.192 1.192 19 C -0.032 4.032 20 H 0.078 0.922 21 C -0.168 4.168 22 C -0.218 4.218 23 S -0.069 6.069 24 C -0.210 4.210 25 H 0.042 0.958 26 H 0.113 0.887 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.249 0.751 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.208 0.792 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.278 -22.302 11.052 24.994 hybrid contribution -0.593 1.446 -0.871 1.789 sum -2.871 -20.856 10.181 23.385 Atomic orbital electron populations 1.22654 0.85892 1.02614 1.02174 1.61715 1.09138 1.11777 1.41098 1.22036 1.02484 0.89592 0.95685 1.20312 0.79745 0.81266 0.88819 1.90661 1.39574 1.64127 1.46422 1.45674 1.57491 1.13275 1.19994 1.20954 1.00993 0.92819 0.87202 1.19637 0.86312 0.86831 0.84939 1.90536 1.45447 1.75408 1.35059 1.42130 1.49874 1.13431 1.15856 1.19439 1.33320 0.85841 1.05359 0.86077 1.25076 0.97444 0.95380 0.98014 1.69618 1.43921 1.06394 1.31251 0.86667 0.80783 0.79154 0.82866 1.19380 1.19934 1.19214 1.22767 0.94314 0.93114 0.93002 0.92206 1.22376 0.94150 0.99375 1.00857 1.23924 0.98102 0.96915 1.02841 1.87667 1.15141 1.38949 1.65130 1.24308 0.99615 0.94954 1.02080 0.95813 0.88719 0.91147 0.91472 0.87498 0.75085 0.89685 0.89786 0.79228 0.91338 0.89612 0.89152 0.88805 0.88285 0.87807 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.95 60.07 0.54 0.68 16 2 N -0.51 -5.02 4.38 -234.43 -1.03 -6.05 16 3 C 0.03 0.33 5.30 -4.97 -0.03 0.30 16 4 C 0.51 6.98 7.56 -10.99 -0.08 6.90 16 5 O -0.53 -8.77 14.31 5.55 0.08 -8.69 16 6 N -0.71 -10.34 5.53 -61.47 -0.34 -10.68 16 7 C 0.11 1.78 6.15 -5.19 -0.03 1.74 16 8 C 0.44 9.28 7.85 -10.98 -0.09 9.20 16 9 O -0.58 -14.19 15.24 5.55 0.08 -14.10 16 10 N -0.58 -13.07 5.09 -10.96 -0.06 -13.13 16 11 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 12 H 0.12 3.74 7.39 -52.48 -0.39 3.35 16 13 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 14 N -0.87 -24.61 13.96 55.50 0.77 -23.83 16 15 Si 0.88 18.70 27.74 -169.99 -4.71 13.98 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 19 C 0.08 0.61 2.32 -66.14 -0.15 0.46 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 21 C -0.13 -0.90 5.11 -25.62 -0.13 -1.03 16 22 C -0.07 -0.46 7.34 37.82 0.28 -0.18 16 23 S -0.29 -2.60 23.26 -107.50 -2.50 -5.10 16 24 C -0.06 -0.48 5.64 38.29 0.22 -0.27 16 25 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 1.15 5.88 -51.93 -0.31 0.84 16 27 H 0.07 0.58 6.57 -51.93 -0.34 0.24 16 28 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 29 H 0.11 0.87 6.24 -51.93 -0.32 0.55 16 30 H 0.41 5.87 7.44 -40.82 -0.30 5.57 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.37 7.50 5.76 -40.82 -0.24 7.27 16 34 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.09 0.50 7.02 -51.93 -0.36 0.14 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.72 7.60 -51.93 -0.39 0.32 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -31.84 337.58 -7.97 -39.81 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.63 Total: 12.39 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 0.27 Total: 10.32 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.65 Total: -53.70 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.16 Total: -22.79 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.71 Total: 13.98 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.50 Total: -5.10 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.84 -7.97 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344155242.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.923 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds