Wall clock time and date at job start Tue Mar 31 2020 03:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31079 * 126.65835 * 2 1 4 4 N 1.28840 * 107.98876 * 179.97438 * 3 2 1 5 5 N 1.28741 * 109.39757 * 359.73702 * 4 3 2 6 6 N 1.29016 * 108.81030 * 0.43697 * 5 4 3 7 7 C 1.46498 * 126.43897 * 179.83345 * 6 5 4 8 8 H 1.09003 * 109.46862 * 179.68681 * 7 6 5 9 9 C 1.52997 * 109.47290 * 299.69073 * 7 6 5 10 10 C 1.50693 * 109.47229 * 295.00078 * 9 7 6 11 11 C 1.38233 * 120.00207 * 89.99423 * 10 9 7 12 12 C 1.38234 * 120.00037 * 179.72405 * 11 10 9 13 13 C 1.38234 * 120.00240 * 0.26327 * 12 11 10 14 14 C 1.38238 * 119.99693 * 359.97438 * 13 12 11 15 15 C 1.38234 * 120.00067 * 0.02562 * 14 13 12 16 16 C 1.50709 * 109.46944 * 59.69316 * 7 6 5 17 17 O 1.21295 * 119.99661 * 239.99753 * 16 7 6 18 18 N 1.34772 * 119.99971 * 60.00038 * 16 7 6 19 19 C 1.37095 * 119.99659 * 180.02562 * 18 16 7 20 20 H 1.07999 * 120.00374 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00213 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99713 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00448 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47121 * 89.99866 * 23 21 19 25 25 H 1.48495 * 109.47116 * 210.00057 * 23 21 19 26 26 H 1.48500 * 109.47008 * 330.00191 * 23 21 19 27 27 H 1.09003 * 109.47168 * 270.03941 * 1 2 3 28 28 H 1.09004 * 109.47518 * 30.04154 * 1 2 3 29 29 H 1.08999 * 109.46958 * 150.03865 * 1 2 3 30 30 H 1.09000 * 109.47015 * 175.00108 * 9 7 6 31 31 H 1.09001 * 109.46743 * 54.99861 * 9 7 6 32 32 H 1.08002 * 120.00157 * 0.02562 * 11 10 9 33 33 H 1.07999 * 120.00009 * 180.28389 * 12 11 10 34 34 H 1.07997 * 120.00460 * 180.02562 * 13 12 11 35 35 H 1.08001 * 119.99624 * 180.02562 * 14 13 12 36 36 H 1.07999 * 120.00008 * 180.02562 * 15 14 13 37 37 H 0.96999 * 120.00334 * 359.97438 * 18 16 7 38 38 H 0.96997 * 120.00400 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2896 1.0515 0.0000 4 7 3.5102 0.6391 0.0005 5 7 3.5265 -0.6482 0.0065 6 7 2.3107 -1.0797 0.0005 7 6 1.8848 -2.4814 0.0006 8 1 0.7959 -2.5303 0.0003 9 6 2.4271 -3.1793 -1.2482 10 6 1.7988 -2.5719 -2.4759 11 6 2.4002 -1.4945 -3.0990 12 6 1.8269 -0.9410 -4.2285 13 6 0.6493 -1.4614 -4.7318 14 6 0.0453 -2.5358 -4.1058 15 6 0.6186 -3.0893 -2.9763 16 6 2.4181 -3.1683 1.2316 17 8 3.1590 -4.1222 1.1207 18 7 2.0716 -2.7226 2.4554 19 6 2.5572 -3.3472 3.5750 20 1 3.2169 -4.1965 3.4764 21 6 2.2005 -2.8874 4.8369 22 7 1.3981 -1.8536 4.9569 23 14 2.8614 -3.7388 6.3626 24 1 4.1426 -3.1060 6.7667 25 1 1.8764 -3.6113 7.4665 26 1 3.0907 -5.1760 6.0673 27 1 -0.3634 0.0007 1.0277 28 1 -0.3634 0.8896 -0.5145 29 1 -0.3633 -0.8903 -0.5132 30 1 2.1861 -4.2415 -1.2044 31 1 3.5089 -3.0537 -1.2937 32 1 3.3206 -1.0882 -2.7063 33 1 2.2992 -0.1021 -4.7180 34 1 0.2016 -1.0292 -5.6144 35 1 -0.8746 -2.9426 -4.4992 36 1 0.1469 -3.9289 -2.4874 37 1 1.4794 -1.9596 2.5440 38 1 1.1488 -1.5329 5.8377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345004368.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:34 Heat of formation + Delta-G solvation = 99.418861 kcal Electronic energy + Delta-G solvation = -24663.826026 eV Core-core repulsion = 21122.818937 eV Total energy + Delta-G solvation = -3541.007090 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.80188 -39.60750 -38.59248 -35.64316 -34.32591 -33.27031 -32.80731 -31.50725 -30.99296 -29.54740 -28.17005 -25.91243 -24.56762 -23.08389 -22.70097 -21.93572 -21.04821 -19.55095 -18.34837 -17.42716 -16.92662 -16.67589 -16.12226 -15.12064 -15.08986 -14.77217 -14.62922 -14.28380 -13.75582 -13.52241 -13.44638 -13.35684 -13.14055 -12.98012 -12.59465 -12.46935 -11.96672 -11.86509 -11.75345 -11.51445 -11.23635 -11.11625 -11.05250 -10.76687 -10.68524 -10.56450 -10.42967 -9.78232 -9.63320 -9.03820 -8.97990 -8.62759 -8.27894 -6.68557 -4.09415 1.20033 1.28931 1.64959 2.11947 2.63615 3.05469 3.14992 3.19571 3.58221 3.64788 3.91781 4.24444 4.28566 4.57258 4.73537 4.80117 4.83516 4.89441 4.92087 5.03924 5.11156 5.33839 5.40252 5.41538 5.54797 5.64711 5.68513 5.78689 5.82745 5.91014 5.96651 6.08565 6.20906 6.34945 6.40397 6.49079 6.60297 6.88989 7.30968 7.72157 8.23796 8.87303 9.02710 9.15875 9.63610 10.47479 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.020373 B = 0.004602 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.067193 B = 6082.725970 C = 6622.353206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.182 3.818 3 N -0.310 5.310 4 N -0.087 5.087 5 N -0.078 5.078 6 N -0.287 5.287 7 C 0.141 3.859 8 H 0.123 0.877 9 C -0.072 4.072 10 C -0.088 4.088 11 C -0.109 4.109 12 C -0.116 4.116 13 C -0.123 4.123 14 C -0.119 4.119 15 C -0.114 4.114 16 C 0.420 3.580 17 O -0.572 6.572 18 N -0.535 5.535 19 C -0.304 4.304 20 H 0.110 0.890 21 C 0.030 3.970 22 N -0.887 5.887 23 Si 0.936 3.064 24 H -0.274 1.274 25 H -0.281 1.281 26 H -0.266 1.266 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.391 0.609 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.589 0.871 -14.443 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 N -0.160 5.160 4 N -0.080 5.080 5 N -0.064 5.064 6 N -0.091 5.091 7 C 0.036 3.964 8 H 0.140 0.860 9 C -0.110 4.110 10 C -0.088 4.088 11 C -0.128 4.128 12 C -0.134 4.134 13 C -0.141 4.141 14 C -0.137 4.137 15 C -0.132 4.132 16 C 0.204 3.796 17 O -0.456 6.456 18 N -0.169 5.169 19 C -0.434 4.434 20 H 0.128 0.872 21 C -0.175 4.175 22 N -0.527 5.527 23 Si 0.762 3.238 24 H -0.200 1.200 25 H -0.206 1.206 26 H -0.190 1.190 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.224 0.776 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.905 0.967 -14.313 15.514 hybrid contribution -0.871 -0.344 0.896 1.296 sum -6.776 0.623 -13.417 15.044 Atomic orbital electron populations 1.20395 0.83135 1.04903 1.05127 1.25998 0.98604 0.82842 1.02163 1.74911 0.97001 1.24411 1.19697 1.78550 1.12854 1.00958 1.15665 1.78897 1.02571 1.07654 1.17276 1.48632 1.04429 1.09374 1.46618 1.22105 1.01427 0.74643 0.98232 0.85975 1.20702 1.02253 1.00437 0.87585 1.19951 0.95583 0.96270 0.97033 1.21149 1.00053 0.95800 0.95753 1.21141 0.96083 0.99865 0.96345 1.21140 0.95919 0.96950 1.00062 1.21128 0.99982 0.96651 0.95975 1.21117 0.95249 1.00209 0.96668 1.19201 0.88506 0.88426 0.83466 1.90585 1.39781 1.30047 1.85188 1.41901 1.41825 1.28684 1.04444 1.19810 1.27236 1.13675 0.82660 0.87232 1.25399 0.96181 0.96188 0.99700 1.69599 1.33442 1.23749 1.25882 0.85757 0.78591 0.79744 0.79706 1.20018 1.20589 1.19036 0.88336 0.88251 0.89861 0.87265 0.88503 0.86497 0.86234 0.86228 0.86010 0.85632 0.77585 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.06 36.00 0.36 -0.48 16 2 C 0.18 2.93 8.13 -155.42 -1.26 1.66 16 3 N -0.31 -5.80 12.36 32.70 0.40 -5.39 16 4 N -0.09 -1.78 13.43 60.35 0.81 -0.97 16 5 N -0.08 -1.58 13.00 60.35 0.78 -0.79 16 6 N -0.29 -4.99 2.43 -52.92 -0.13 -5.12 16 7 C 0.14 2.33 2.80 -69.08 -0.19 2.13 16 8 H 0.12 1.61 6.77 -51.93 -0.35 1.26 16 9 C -0.07 -1.06 4.27 -27.89 -0.12 -1.18 16 10 C -0.09 -1.12 4.95 -104.63 -0.52 -1.64 16 11 C -0.11 -1.45 9.31 -39.58 -0.37 -1.82 16 12 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 13 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 14 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 15 C -0.11 -1.22 9.70 -39.58 -0.38 -1.60 16 16 C 0.42 9.27 7.24 -10.98 -0.08 9.19 16 17 O -0.57 -14.39 15.50 5.54 0.09 -14.31 16 18 N -0.54 -12.92 5.29 -10.96 -0.06 -12.98 16 19 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 20 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.03 0.76 5.50 -17.47 -0.10 0.66 16 22 N -0.89 -23.12 13.05 55.50 0.72 -22.40 16 23 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.75 7.17 -51.93 -0.37 0.38 16 30 H 0.11 1.54 7.90 -51.93 -0.41 1.13 16 31 H 0.10 1.62 8.06 -51.93 -0.42 1.20 16 32 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 38 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -31.72 337.56 -5.66 -37.37 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -4.35 Total: 10.51 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -4.00 Total: -6.18 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 2.54 Total: -47.65 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.09 Total: -14.31 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.72 -5.66 -37.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345004368.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.794 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds