Wall clock time and date at job start Tue Mar 31 2020 03:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 110.38686 * 2 1 4 4 N 1.46507 * 109.47155 * 62.77172 * 3 2 1 5 5 C 1.34768 * 120.00167 * 179.97438 * 4 3 2 6 6 O 1.21593 * 120.00065 * 0.02562 * 5 4 3 7 7 N 1.34779 * 120.00267 * 180.02562 * 5 4 3 8 8 C 1.46497 * 119.99951 * 180.02562 * 7 5 4 9 9 C 1.50704 * 109.46910 * 180.02562 * 8 7 5 10 10 O 1.21295 * 120.00149 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99912 * 179.97438 * 9 8 7 12 12 C 1.37102 * 119.99894 * 179.97438 * 11 9 8 13 13 H 1.07997 * 120.00263 * 0.02562 * 12 11 9 14 14 C 1.38955 * 119.99968 * 179.97438 * 12 11 9 15 15 N 1.31411 * 119.99815 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47412 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47371 * 120.00200 * 16 14 12 19 19 H 1.48500 * 109.47060 * 240.00396 * 16 14 12 20 20 C 1.53704 * 110.34129 * 237.77455 * 2 1 3 21 21 C 1.52945 * 112.37947 * 238.37179 * 20 2 1 22 22 C 1.54829 * 109.12961 * 30.07126 * 21 20 2 23 23 S 1.83399 * 110.34241 * 122.22734 * 2 1 3 24 24 H 1.09000 * 109.46659 * 182.23039 * 1 2 3 25 25 H 1.09002 * 109.47065 * 302.22388 * 1 2 3 26 26 H 1.08998 * 109.47011 * 62.22641 * 1 2 3 27 27 H 1.08998 * 109.47507 * 182.76956 * 3 2 1 28 28 H 1.08994 * 109.47100 * 302.77507 * 3 2 1 29 29 H 0.97004 * 119.99805 * 0.02562 * 4 3 2 30 30 H 0.96995 * 119.99687 * 0.02562 * 7 5 4 31 31 H 1.09001 * 109.47262 * 299.99269 * 8 7 5 32 32 H 1.08996 * 109.47610 * 59.99751 * 8 7 5 33 33 H 0.96996 * 120.00254 * 0.02562 * 11 9 8 34 34 H 0.97004 * 119.99579 * 179.97438 * 15 14 12 35 35 H 1.09002 * 108.88799 * 359.09516 * 20 2 1 36 36 H 1.08999 * 108.88946 * 117.65010 * 20 2 1 37 37 H 1.08996 * 109.60269 * 149.96199 * 21 20 2 38 38 H 1.09006 * 109.60036 * 270.09837 * 21 20 2 39 39 H 1.09004 * 111.17062 * 200.66102 * 22 21 20 40 40 H 1.08994 * 111.16026 * 76.47294 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 7 1.6407 2.1121 1.2282 5 6 1.9971 3.3932 1.4475 6 8 2.6687 3.9866 0.6257 7 7 1.6091 4.0167 2.5776 8 6 1.9960 5.4095 2.8156 9 6 1.4402 5.8659 4.1399 10 8 0.7849 5.1031 4.8180 11 7 1.6713 7.1218 4.5708 12 6 1.1652 7.5373 5.7754 13 1 0.5817 6.8580 6.3792 14 6 1.4039 8.8320 6.2199 15 7 2.1143 9.6583 5.4855 16 14 0.7150 9.3977 7.8615 17 1 -0.0429 8.2860 8.4899 18 1 1.8309 9.8019 8.7539 19 1 -0.1905 10.5549 7.6459 20 6 2.0643 -0.7685 -1.2192 21 6 2.9621 -1.9409 -0.8209 22 6 2.5049 -2.4857 0.5544 23 16 2.1676 -0.9170 1.4547 24 1 -0.3633 -1.0269 0.0400 25 1 -0.3633 0.5480 0.8694 26 1 -0.3633 0.4789 -0.9093 27 1 3.1517 1.4173 -0.0497 28 1 1.6681 1.9685 -0.8640 29 1 1.1053 1.6386 1.8840 30 1 1.0737 3.5433 3.2333 31 1 3.0832 5.4868 2.8323 32 1 1.5993 6.0382 2.0185 33 1 2.1950 7.7321 4.0285 34 1 2.2806 10.5623 5.7957 35 1 1.2201 -1.1499 -1.7936 36 1 2.6357 -0.0835 -1.8455 37 1 2.8857 -2.7304 -1.5684 38 1 3.9964 -1.6032 -0.7540 39 1 3.3007 -3.0527 1.0376 40 1 1.6003 -3.0861 0.4587 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345257962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:37 Heat of formation + Delta-G solvation = -101.247304 kcal Electronic energy + Delta-G solvation = -21787.442250 eV Core-core repulsion = 18340.884823 eV Total energy + Delta-G solvation = -3446.557427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26281 -40.08035 -38.45171 -36.25555 -35.58151 -35.27051 -33.38307 -32.62256 -29.43058 -28.05984 -27.10276 -26.01878 -23.34939 -22.01377 -21.37421 -21.16334 -20.10717 -19.52338 -17.93505 -17.43803 -17.11349 -16.86700 -16.54518 -16.34242 -15.93570 -15.84452 -15.43229 -15.16831 -14.99131 -14.82968 -14.30801 -13.96149 -13.87510 -13.57493 -13.55224 -13.48397 -12.92043 -12.71292 -12.44734 -12.41482 -12.15338 -12.11288 -11.97665 -11.58332 -11.58066 -11.41903 -10.77010 -10.56199 -10.43380 -10.10354 -9.83553 -8.73310 -8.51157 -6.01302 0.79114 1.35091 1.39254 1.42502 1.55209 1.62420 1.89330 2.09899 2.28750 3.03155 3.15986 3.28621 3.47123 3.56479 3.76778 3.99418 4.12669 4.21010 4.33186 4.42237 4.45432 4.52231 4.61009 4.67237 4.73615 4.80017 4.88610 5.02820 5.05800 5.21050 5.24814 5.29322 5.38515 5.41551 5.86359 5.92866 6.48096 6.95772 7.03535 7.41717 7.49968 7.94513 8.66089 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.037528 B = 0.002411 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.932374 B =11611.361262 C =11949.852521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.009 4.009 3 C 0.162 3.838 4 N -0.730 5.730 5 C 0.707 3.293 6 O -0.630 6.630 7 N -0.725 5.725 8 C 0.142 3.858 9 C 0.434 3.566 10 O -0.624 6.624 11 N -0.559 5.559 12 C -0.336 4.336 13 H 0.086 0.914 14 C -0.012 4.012 15 N -0.916 5.916 16 Si 0.998 3.002 17 H -0.270 1.270 18 H -0.271 1.271 19 H -0.270 1.270 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.057 4.057 23 S -0.351 6.351 24 H 0.076 0.924 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.404 0.596 30 H 0.408 0.592 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.553 -22.942 -15.331 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.119 4.119 3 C 0.037 3.963 4 N -0.386 5.386 5 C 0.406 3.594 6 O -0.511 6.511 7 N -0.382 5.382 8 C 0.014 3.986 9 C 0.221 3.779 10 O -0.512 6.512 11 N -0.195 5.195 12 C -0.465 4.465 13 H 0.104 0.896 14 C -0.212 4.212 15 N -0.556 5.556 16 Si 0.821 3.179 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.195 1.195 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.204 4.204 23 S -0.124 6.124 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.240 0.760 30 H 0.246 0.754 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.233 0.767 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.152 -22.382 -14.423 26.627 hybrid contribution -0.468 0.241 0.214 0.568 sum -0.620 -22.141 -14.209 26.316 Atomic orbital electron populations 1.22049 0.90554 1.03497 1.02979 1.23515 0.99363 0.94862 0.94157 1.21311 0.99428 0.89514 0.86086 1.44981 1.58572 1.10728 1.24348 1.15884 0.79896 0.81992 0.81612 1.90876 1.45638 1.67049 1.47572 1.44698 1.58377 1.13354 1.21816 1.20591 1.00669 0.82803 0.94568 1.20416 0.85343 0.83074 0.89094 1.90472 1.46069 1.54901 1.59808 1.41835 1.47139 1.11062 1.19436 1.19767 1.32131 0.97624 0.97010 0.89647 1.26143 0.96707 0.95291 1.03067 1.69690 1.38775 1.07554 1.39600 0.84802 0.78139 0.78148 0.76824 1.19485 1.19621 1.19537 1.22142 1.01274 0.97027 0.95568 1.22322 1.00180 0.97770 0.95737 1.24397 1.05326 0.94289 0.96425 1.88423 1.85479 1.16747 1.21741 0.90486 0.92764 0.90138 0.91893 0.90093 0.75986 0.75434 0.89125 0.88828 0.76661 0.91054 0.88394 0.89328 0.87526 0.90986 0.87068 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.25 71.98 0.59 -1.08 16 2 C -0.01 -0.13 0.84 -10.55 -0.01 -0.14 16 3 C 0.16 3.35 4.39 86.38 0.38 3.73 16 4 N -0.73 -18.68 5.02 -478.53 -2.40 -21.09 16 5 C 0.71 23.81 8.57 179.06 1.53 25.35 16 6 O -0.63 -25.06 16.34 -4.01 -0.07 -25.13 16 7 N -0.73 -25.52 5.53 -482.30 -2.67 -28.19 16 8 C 0.14 5.45 6.15 85.63 0.53 5.98 16 9 C 0.43 20.59 7.85 87.66 0.69 21.28 16 10 O -0.62 -33.14 15.24 -3.08 -0.05 -33.19 16 11 N -0.56 -28.65 5.29 -306.98 -1.62 -30.27 16 12 C -0.34 -18.80 9.68 84.04 0.81 -17.98 16 13 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 14 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 15 N -0.92 -49.20 13.05 21.66 0.28 -48.92 16 16 Si 1.00 42.27 29.55 68.60 2.03 44.30 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 20 C -0.12 -1.11 5.75 30.81 0.18 -0.93 16 21 C -0.12 -0.95 6.31 31.20 0.20 -0.76 16 22 C -0.06 -0.59 7.51 72.61 0.55 -0.04 16 23 S -0.35 -6.58 21.34 -56.49 -1.21 -7.78 16 24 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.84 7.06 -2.39 -0.02 0.82 16 26 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.40 9.48 7.08 -92.71 -0.66 8.82 16 30 H 0.41 14.24 7.45 -92.71 -0.69 13.55 16 31 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 32 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 34 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 35 H 0.10 0.56 7.62 -2.39 -0.02 0.54 16 36 H 0.09 0.79 7.62 -2.39 -0.02 0.77 16 37 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -69.73 345.11 -0.78 -70.51 By element: Atomic # 1 Polarization: 45.48 SS G_CDS: -1.00 Total: 44.48 kcal Atomic # 6 Polarization: 29.36 SS G_CDS: 5.91 Total: 35.27 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -6.41 Total: -128.47 kcal Atomic # 8 Polarization: -58.20 SS G_CDS: -0.11 Total: -58.32 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: -6.58 SS G_CDS: -1.21 Total: -7.78 kcal Total: -69.73 -0.78 -70.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345257962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.737 kcal (2) G-P(sol) polarization free energy of solvation -69.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds