Wall clock time and date at job start Tue Mar 31 2020 03:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 110.35648 * 2 1 4 4 N 1.46497 * 109.47082 * 300.69459 * 3 2 1 5 5 C 1.34776 * 119.99890 * 179.97438 * 4 3 2 6 6 O 1.21587 * 120.00152 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99993 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00105 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.47356 * 180.02562 * 8 7 5 10 10 O 1.21291 * 119.99766 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00175 * 179.97438 * 9 8 7 12 12 C 1.37093 * 120.00075 * 179.97438 * 11 9 8 13 13 H 1.08007 * 119.99959 * 359.97438 * 12 11 9 14 14 C 1.38950 * 120.00717 * 179.97438 * 12 11 9 15 15 N 1.31400 * 120.00586 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99179 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47439 * 90.00078 * 16 14 12 18 18 H 1.48505 * 109.46578 * 210.00050 * 16 14 12 19 19 H 1.48504 * 109.47159 * 329.99586 * 16 14 12 20 20 C 1.54276 * 110.39861 * 122.31950 * 2 1 3 21 21 C 1.53862 * 108.92347 * 90.84081 * 20 2 1 22 22 C 1.55133 * 106.89912 * 47.25582 * 21 20 2 23 23 S 1.83093 * 110.40053 * 237.54814 * 2 1 3 24 24 H 1.09001 * 109.46801 * 297.67941 * 1 2 3 25 25 H 1.09001 * 109.46998 * 57.67537 * 1 2 3 26 26 H 1.09000 * 109.47050 * 177.67829 * 1 2 3 27 27 H 1.09002 * 109.47400 * 60.69976 * 3 2 1 28 28 H 1.09003 * 109.47126 * 180.69770 * 3 2 1 29 29 H 0.96998 * 120.00228 * 0.02562 * 4 3 2 30 30 H 0.97005 * 119.99884 * 0.02562 * 7 5 4 31 31 H 1.09006 * 109.46958 * 299.99919 * 8 7 5 32 32 H 1.09000 * 109.47426 * 59.99484 * 8 7 5 33 33 H 0.97005 * 119.99934 * 359.97438 * 11 9 8 34 34 H 0.97010 * 120.00108 * 179.97438 * 15 14 12 35 35 H 1.08993 * 109.61183 * 210.76161 * 20 2 1 36 36 H 1.08998 * 109.61031 * 330.91988 * 20 2 1 37 37 H 1.08998 * 109.97446 * 166.61955 * 21 20 2 38 38 H 1.08994 * 109.97179 * 287.89417 * 21 20 2 39 39 H 1.08999 * 110.85719 * 76.06120 * 22 21 20 40 40 H 1.08995 * 110.85473 * 199.50135 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0623 1.4344 0.0000 4 7 1.5711 2.1375 -1.1877 5 6 1.9138 3.4237 -1.3992 6 8 2.6309 4.0004 -0.6045 7 7 1.4615 4.0707 -2.4916 8 6 1.8344 5.4686 -2.7218 9 6 1.2024 5.9530 -4.0013 10 8 0.5091 5.2040 -4.6567 11 7 1.4076 7.2184 -4.4173 12 6 0.8331 7.6589 -5.5815 13 1 0.2164 6.9917 -6.1656 14 6 1.0441 8.9636 -6.0103 15 7 0.4939 9.3856 -7.1264 16 14 2.1113 10.1173 -5.0005 17 1 3.5227 10.0054 -5.4484 18 1 1.6425 11.5142 -5.1855 19 1 2.0170 9.7496 -3.5648 20 6 2.0678 -0.7731 1.2220 21 6 2.2617 -2.2490 0.8329 22 6 3.0125 -2.2626 -0.5246 23 16 2.1683 -0.9208 -1.4481 24 1 -0.3633 0.4774 0.9101 25 1 -0.3633 0.5495 -0.8684 26 1 -0.3633 -1.0268 -0.0416 27 1 1.7172 1.9501 0.8962 28 1 3.1521 1.4176 -0.0125 29 1 0.9987 1.6776 -1.8215 30 1 0.8891 3.6108 -3.1255 31 1 1.4842 6.0798 -1.8899 32 1 2.9188 5.5474 -2.7992 33 1 1.9618 7.8175 -3.8930 34 1 0.6409 10.2967 -7.4255 35 1 3.0222 -0.3482 1.5326 36 1 1.3542 -0.7019 2.0429 37 1 2.8550 -2.7593 1.5917 38 1 1.2927 -2.7366 0.7273 39 1 4.0690 -2.0331 -0.3861 40 1 2.8881 -3.2217 -1.0273 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345257967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:40 Heat of formation + Delta-G solvation = -96.732828 kcal Electronic energy + Delta-G solvation = -21832.972255 eV Core-core repulsion = 18386.610591 eV Total energy + Delta-G solvation = -3446.361665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28084 -40.20546 -38.45598 -36.29662 -35.58683 -35.28949 -33.83674 -32.56488 -29.55627 -27.88268 -27.14683 -25.92223 -23.31802 -21.95570 -21.47350 -21.18767 -20.56625 -19.55476 -17.85685 -17.48428 -17.17562 -16.84013 -16.71702 -16.46955 -15.89878 -15.76235 -15.35034 -15.14493 -14.87811 -14.76414 -14.31793 -14.18223 -14.04149 -13.96414 -13.62266 -13.42174 -12.96859 -12.72026 -12.44488 -12.35274 -12.19271 -12.02759 -11.99667 -11.61623 -11.58177 -11.44023 -10.78864 -10.65771 -10.42595 -10.31954 -9.82657 -8.71358 -8.45453 -6.07539 0.77200 1.31457 1.34559 1.43951 1.44413 1.59386 1.78828 2.10756 2.20832 2.78484 3.10748 3.25500 3.46508 3.59729 3.79695 3.97544 3.99551 4.05696 4.33141 4.39493 4.44391 4.55136 4.60496 4.67835 4.76445 4.80355 4.85727 4.98647 5.02064 5.14407 5.27916 5.29247 5.41994 5.49243 5.87185 5.88704 6.48979 6.78058 6.95441 7.28244 7.49288 7.78348 8.71001 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.037687 B = 0.002499 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.787920 B =11202.626462 C =11495.315571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.013 4.013 3 C 0.162 3.838 4 N -0.730 5.730 5 C 0.708 3.292 6 O -0.628 6.628 7 N -0.728 5.728 8 C 0.139 3.861 9 C 0.445 3.555 10 O -0.615 6.615 11 N -0.577 5.577 12 C -0.331 4.331 13 H 0.063 0.937 14 C -0.009 4.009 15 N -0.926 5.926 16 Si 0.960 3.040 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.232 1.232 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.065 4.065 23 S -0.346 6.346 24 H 0.081 0.919 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.403 0.597 30 H 0.408 0.592 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.392 0.608 34 H 0.281 0.719 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.078 -21.921 21.784 31.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.123 4.123 3 C 0.037 3.963 4 N -0.386 5.386 5 C 0.408 3.592 6 O -0.509 6.509 7 N -0.386 5.386 8 C 0.010 3.990 9 C 0.233 3.767 10 O -0.501 6.501 11 N -0.217 5.217 12 C -0.460 4.460 13 H 0.081 0.919 14 C -0.209 4.209 15 N -0.566 5.566 16 Si 0.779 3.221 17 H -0.181 1.181 18 H -0.198 1.198 19 H -0.155 1.155 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.213 4.213 23 S -0.119 6.119 24 H 0.100 0.900 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.239 0.761 30 H 0.245 0.755 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.228 0.772 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.142 -21.536 20.718 30.323 hybrid contribution -0.033 0.436 0.116 0.453 sum 5.109 -21.100 20.834 30.089 Atomic orbital electron populations 1.21945 0.90530 1.03553 1.02893 1.23590 0.99550 0.94730 0.94469 1.21289 0.98616 0.89324 0.87119 1.44967 1.55450 1.10226 1.27923 1.15842 0.80172 0.81902 0.81310 1.90873 1.43601 1.68161 1.48293 1.44728 1.55334 1.12832 1.25677 1.20699 1.00803 0.82739 0.94719 1.20512 0.85003 0.82578 0.88612 1.90526 1.44105 1.56018 1.59454 1.41909 1.46125 1.11485 1.22226 1.19025 1.29502 0.97840 0.99680 0.91929 1.26078 0.98772 0.98492 0.97516 1.69780 1.44592 1.19097 1.23097 0.85436 0.78780 0.77927 0.79924 1.18115 1.19759 1.15519 1.22466 1.03186 0.94319 0.95947 1.22546 1.01675 0.96139 0.95350 1.24374 1.01662 0.97889 0.97329 1.88123 1.70787 1.34318 1.18714 0.89990 0.92949 0.90462 0.90152 0.91947 0.76082 0.75490 0.87883 0.88055 0.77178 0.90907 0.90011 0.87534 0.87481 0.89798 0.88836 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.38 71.98 0.60 -0.99 16 2 C -0.01 -0.19 0.77 -10.36 -0.01 -0.19 16 3 C 0.16 3.12 4.53 86.38 0.39 3.51 16 4 N -0.73 -17.44 5.05 -478.53 -2.42 -19.86 16 5 C 0.71 22.12 8.57 179.05 1.53 23.65 16 6 O -0.63 -23.07 16.34 -3.99 -0.07 -23.14 16 7 N -0.73 -23.74 5.53 -482.28 -2.67 -26.41 16 8 C 0.14 4.74 6.15 85.63 0.53 5.27 16 9 C 0.45 19.90 7.85 87.66 0.69 20.59 16 10 O -0.62 -32.45 15.24 -3.06 -0.05 -32.50 16 11 N -0.58 -27.01 5.09 -306.99 -1.56 -28.57 16 12 C -0.33 -19.06 10.16 84.04 0.85 -18.21 16 13 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 14 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 15 N -0.93 -54.87 13.96 21.66 0.30 -54.57 16 16 Si 0.96 38.50 27.74 68.60 1.90 40.40 16 17 H -0.26 -9.83 7.11 99.48 0.71 -9.13 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 20 C -0.12 -0.98 5.47 31.32 0.17 -0.81 16 21 C -0.12 -0.75 6.46 31.62 0.20 -0.54 16 22 C -0.06 -0.68 7.38 72.71 0.54 -0.15 16 23 S -0.35 -6.30 21.62 -56.49 -1.22 -7.52 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.79 6.83 -2.39 -0.02 0.77 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.36 8.13 -2.39 -0.02 1.35 16 29 H 0.40 8.90 7.02 -92.71 -0.65 8.25 16 30 H 0.41 13.49 7.45 -92.70 -0.69 12.80 16 31 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 32 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 33 H 0.39 15.39 5.76 -92.70 -0.53 14.86 16 34 H 0.28 15.22 8.31 -92.70 -0.77 14.45 16 35 H 0.08 0.68 7.85 -2.39 -0.02 0.66 16 36 H 0.11 0.53 7.89 -2.39 -0.02 0.51 16 37 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -76.06 342.43 -0.66 -76.72 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: -0.85 Total: 43.32 kcal Atomic # 6 Polarization: 26.15 SS G_CDS: 5.97 Total: 32.12 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -6.35 Total: -129.41 kcal Atomic # 8 Polarization: -55.53 SS G_CDS: -0.11 Total: -55.64 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 1.90 Total: 40.40 kcal Atomic # 16 Polarization: -6.30 SS G_CDS: -1.22 Total: -7.52 kcal Total: -76.06 -0.66 -76.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345257967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.009 kcal (2) G-P(sol) polarization free energy of solvation -76.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds