Wall clock time and date at job start Tue Mar 31 2020 04:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34944 * 126.03967 * 2 1 4 4 C 1.35313 * 107.74941 * 180.14413 * 3 2 1 5 5 C 1.50702 * 126.04248 * 179.87151 * 4 3 2 6 6 C 1.53005 * 109.47208 * 269.71677 * 5 4 3 7 7 N 1.46493 * 109.47062 * 179.97438 * 6 5 4 8 8 S 1.65608 * 119.99916 * 164.99917 * 7 6 5 9 9 O 1.42102 * 104.27862 * 180.79934 * 8 7 6 10 10 O 1.42098 * 104.27532 * 308.65568 * 8 7 6 11 11 C 1.81401 * 104.44690 * 64.72499 * 8 7 6 12 12 C 1.53001 * 109.46754 * 179.97438 * 11 8 7 13 13 C 1.53005 * 109.46695 * 179.97438 * 12 11 8 14 14 C 1.50702 * 109.46586 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00755 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99774 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00260 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99741 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47100 * 90.00593 * 18 16 14 20 20 H 1.48505 * 109.47210 * 210.00141 * 18 16 14 21 21 H 1.48496 * 109.47402 * 330.00289 * 18 16 14 22 22 C 1.39868 * 107.91775 * 359.61136 * 4 3 2 23 23 N 1.30836 * 108.20394 * 0.23866 * 22 4 3 24 24 H 1.08999 * 109.47465 * 270.26397 * 1 2 3 25 25 H 1.09001 * 109.47512 * 30.26262 * 1 2 3 26 26 H 1.09000 * 109.47012 * 150.26531 * 1 2 3 27 27 H 1.08001 * 126.12383 * 359.97438 * 3 2 1 28 28 H 1.08998 * 109.47223 * 149.71986 * 5 4 3 29 29 H 1.09001 * 109.47153 * 29.71170 * 5 4 3 30 30 H 1.09002 * 109.46785 * 59.99528 * 6 5 4 31 31 H 1.08994 * 109.46912 * 300.00109 * 6 5 4 32 32 H 0.97000 * 120.00740 * 344.72579 * 7 6 5 33 33 H 1.08996 * 109.47201 * 299.99843 * 11 8 7 34 34 H 1.08997 * 109.46951 * 60.00554 * 11 8 7 35 35 H 1.08997 * 109.47212 * 300.00514 * 12 11 8 36 36 H 1.08997 * 109.46811 * 60.00625 * 12 11 8 37 37 H 1.08996 * 109.47312 * 300.00032 * 13 12 11 38 38 H 1.08997 * 109.46899 * 60.00779 * 13 12 11 39 39 H 0.96996 * 120.00667 * 179.97438 * 17 16 14 40 40 H 1.08003 * 125.89835 * 180.26433 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6665 -0.0032 5 6 4.7679 1.5452 -0.0072 6 6 5.1825 1.8359 -1.4510 7 7 6.3723 2.6906 -1.4548 8 16 7.2617 2.8655 -2.8408 9 8 8.3251 3.7312 -2.4678 10 8 7.5159 1.5333 -3.2645 11 6 6.1389 3.6980 -3.9970 12 6 6.8535 3.9194 -5.3316 13 6 5.9062 4.6210 -6.3070 14 6 6.6100 4.8385 -7.6218 15 1 7.6308 4.5098 -7.7488 16 6 5.9508 5.4583 -8.6622 17 7 6.5647 5.6478 -9.8097 18 14 4.1854 6.0277 -8.4422 19 1 4.1749 7.4226 -7.9328 20 1 3.4810 5.9726 -9.7485 21 1 3.4965 5.1407 -7.4707 22 6 3.5346 -0.7321 0.0037 23 7 2.2891 -1.1328 0.0057 24 1 -0.3634 0.0047 1.0276 25 1 -0.3634 0.8876 -0.5179 26 1 -0.3633 -0.8924 -0.5097 27 1 1.9281 2.1193 -0.0004 28 1 5.5820 1.0365 0.5091 29 1 4.5441 2.4825 0.5022 30 1 4.3684 2.3446 -1.9673 31 1 5.4063 0.8987 -1.9604 32 1 6.6370 3.1572 -0.6466 33 1 5.2560 3.0788 -4.1555 34 1 5.8382 4.6601 -3.5823 35 1 7.7362 4.5388 -5.1727 36 1 7.1545 2.9575 -5.7465 37 1 5.0238 4.0012 -6.4658 38 1 5.6049 5.5829 -5.8923 39 1 6.1009 6.0834 -10.5418 40 1 4.4053 -1.3710 0.0073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354476521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:04 Heat of formation + Delta-G solvation = -10.161918 kcal Electronic energy + Delta-G solvation = -21630.860979 eV Core-core repulsion = 18188.253310 eV Total energy + Delta-G solvation = -3442.607669 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.52293 -36.97571 -36.31866 -35.74931 -34.80339 -33.71152 -32.21393 -31.80121 -28.80056 -28.37256 -26.46827 -23.61687 -23.23773 -21.44180 -20.65885 -20.38665 -19.21889 -17.56006 -16.99488 -16.90465 -16.48098 -15.92034 -15.74403 -15.18892 -14.97697 -14.66780 -14.22205 -14.19550 -13.76550 -13.26466 -13.18616 -12.91242 -12.86575 -12.36555 -12.30644 -12.12926 -11.95087 -11.86888 -11.79513 -11.62488 -11.50351 -10.97932 -10.95208 -10.85090 -10.09218 -9.91723 -9.81476 -9.75059 -9.37808 -9.24915 -8.71443 -8.59198 -6.08681 -4.07863 0.42656 1.54765 2.18444 2.44420 2.85531 3.25611 3.33068 3.35076 3.92022 4.15323 4.36315 4.39719 4.46838 4.70661 4.71144 4.75967 4.82928 4.97791 4.99831 5.05351 5.11217 5.25031 5.29828 5.41009 5.45316 5.55652 5.76560 5.91675 5.93153 6.15238 6.27436 6.31628 6.64364 6.67526 6.88821 7.12608 7.26703 7.36359 7.70914 8.47595 8.96056 9.52416 11.04701 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.003230 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.976783 B = 8667.586613 C =10259.716433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.378 5.378 3 C 0.060 3.940 4 C -0.238 4.238 5 C -0.043 4.043 6 C 0.117 3.883 7 N -1.126 6.126 8 S 2.604 3.396 9 O -0.962 6.962 10 O -0.960 6.960 11 C -0.616 4.616 12 C -0.098 4.098 13 C -0.004 4.004 14 C -0.527 4.527 15 H 0.075 0.925 16 C 0.067 3.933 17 N -0.900 5.900 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.266 1.266 22 C 0.056 3.944 23 N -0.298 5.298 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.174 0.826 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.414 0.586 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.020 0.980 38 H 0.015 0.985 39 H 0.264 0.736 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 -8.372 24.318 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.160 5.160 3 C -0.086 4.086 4 C -0.251 4.251 5 C -0.083 4.083 6 C -0.010 4.010 7 N -0.884 5.884 8 S 2.700 3.300 9 O -0.953 6.953 10 O -0.949 6.949 11 C -0.748 4.748 12 C -0.137 4.137 13 C -0.043 4.043 14 C -0.565 4.565 15 H 0.093 0.907 16 C -0.134 4.134 17 N -0.539 5.539 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.130 4.130 23 N -0.119 5.119 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.192 0.808 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.248 0.752 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -11.858 -9.725 23.868 28.371 hybrid contribution -1.113 1.628 0.153 1.978 sum -12.971 -8.097 24.022 28.475 Atomic orbital electron populations 1.21869 0.74139 1.04695 1.03332 1.48487 1.06727 1.03914 1.56860 1.22387 0.90875 0.93478 1.01896 1.19932 0.94151 0.93996 1.16976 1.19991 0.94243 0.98460 0.95614 1.21365 0.86384 0.94659 0.98545 1.55720 1.42650 1.61404 1.28643 1.05169 0.75170 0.75192 0.74514 1.93585 1.51626 1.68681 1.81371 1.93576 1.83621 1.35638 1.82100 1.30599 1.16171 1.13910 1.14076 1.21312 0.99404 1.02508 0.90513 1.19529 0.95058 0.95154 0.94567 1.21146 1.01273 1.38994 0.95064 0.90703 1.25028 0.98005 0.95334 0.95063 1.69906 1.37421 1.43256 1.03325 0.86773 0.85413 0.79455 0.77592 1.20229 1.21274 1.19101 1.23886 0.95259 0.94606 0.99260 1.77390 1.01771 1.08259 1.24510 0.90781 0.89355 0.89216 0.80845 0.90172 0.90691 0.91878 0.90002 0.75196 0.85580 0.85328 0.90965 0.90947 0.96221 0.96638 0.92623 0.79829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.45 11.47 59.84 0.69 1.13 16 2 N -0.38 -3.17 4.01 -68.17 -0.27 -3.44 16 3 C 0.06 0.44 11.40 -17.23 -0.20 0.24 16 4 C -0.24 -1.92 5.35 -105.05 -0.56 -2.48 16 5 C -0.04 -0.29 5.84 -27.88 -0.16 -0.45 16 6 C 0.12 0.99 6.11 -4.04 -0.02 0.96 16 7 N -1.13 -10.59 5.88 -10.62 -0.06 -10.65 16 8 S 2.60 35.83 5.46 -107.50 -0.59 35.25 16 9 O -0.96 -16.16 18.08 -57.54 -1.04 -17.20 16 10 O -0.96 -16.33 17.51 -57.54 -1.01 -17.34 16 11 C -0.62 -8.67 6.07 37.16 0.23 -8.45 16 12 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16 13 C 0.00 -0.10 4.04 -27.88 -0.11 -0.22 16 14 C -0.53 -15.00 9.66 -34.44 -0.33 -15.33 16 15 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 18 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 22 C 0.06 0.52 11.96 -17.37 -0.21 0.31 16 23 N -0.30 -3.21 12.58 30.62 0.39 -2.82 16 24 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 32 H 0.41 3.03 8.62 -34.47 -0.30 2.74 16 33 H 0.13 1.54 8.14 -51.93 -0.42 1.11 16 34 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 38 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 353.15 15.07 5.32 5.32 Total: -1.00 -38.59 353.15 -8.21 -46.79 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.12 Total: -1.16 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -0.92 Total: -24.46 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.82 Total: -43.87 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -2.05 Total: -34.54 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 35.83 SS G_CDS: -0.59 Total: 35.25 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.59 -8.21 -46.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354476521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.629 kcal (2) G-P(sol) polarization free energy of solvation -38.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds