Wall clock time and date at job start Tue Mar 31 2020 04:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00000 * 2 1 4 4 H 1.09002 * 110.78164 * 31.78640 * 3 2 1 5 5 C 1.54323 * 110.71909 * 268.54486 * 3 2 1 6 6 N 1.47018 * 107.27252 * 219.44491 * 5 3 2 7 7 C 1.34784 * 125.64722 * 178.90573 * 6 5 3 8 8 O 1.21579 * 120.00114 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99908 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47313 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00041 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99618 * 180.02562 * 11 10 9 14 14 C 1.37100 * 119.99918 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99663 * 359.97438 * 14 13 11 16 16 C 1.38949 * 120.00481 * 179.97438 * 14 13 11 17 17 N 1.31409 * 119.99472 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00015 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47444 * 59.99882 * 18 16 14 20 20 H 1.48506 * 109.46657 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46822 * 299.99597 * 18 16 14 22 22 C 1.47421 * 108.70379 * 359.16638 * 6 5 3 23 23 C 1.54688 * 104.94018 * 23.81126 * 22 6 5 24 24 H 1.09002 * 110.81695 * 81.32226 * 23 22 6 25 25 O 1.42904 * 111.13503 * 205.09067 * 23 22 6 26 26 C 1.42900 * 113.99928 * 262.38447 * 25 23 22 27 27 H 1.09002 * 109.47109 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46818 * 299.99801 * 1 2 3 29 29 H 1.08994 * 109.47104 * 60.00104 * 1 2 3 30 30 H 1.09003 * 109.88093 * 100.02936 * 5 3 2 31 31 H 1.09005 * 109.88379 * 338.86464 * 5 3 2 32 32 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 33 33 H 1.09000 * 109.47024 * 300.00478 * 10 9 7 34 34 H 1.09004 * 109.46875 * 60.00324 * 10 9 7 35 35 H 0.96996 * 120.00263 * 359.97438 * 13 11 10 36 36 H 0.97002 * 119.99680 * 179.97438 * 17 16 14 37 37 H 1.09006 * 110.36331 * 142.73710 * 22 6 5 38 38 H 1.08996 * 110.37004 * 265.06168 * 22 6 5 39 39 H 1.09001 * 109.46715 * 60.00171 * 26 25 23 40 40 H 1.09000 * 109.46819 * 180.02562 * 26 25 23 41 41 H 1.08997 * 109.47532 * 300.00162 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0110 0.5368 5 6 2.2658 1.7893 -1.4430 6 7 3.5562 2.4938 -1.4450 7 6 4.1465 3.0486 -2.5223 8 8 3.6064 2.9884 -3.6098 9 7 5.3354 3.6702 -2.3937 10 6 5.9773 4.2728 -3.5646 11 6 7.2856 4.8980 -3.1541 12 8 7.6465 4.8451 -1.9974 13 7 8.0545 5.5160 -4.0724 14 6 9.2450 6.0844 -3.6991 15 1 9.5664 6.0373 -2.6691 16 6 10.0381 6.7212 -4.6459 17 7 9.6472 6.7781 -5.8992 18 14 11.6604 7.4950 -4.1373 19 1 12.5498 6.4511 -3.5679 20 1 12.3106 8.1065 -5.3241 21 1 11.4100 8.5431 -3.1156 22 6 4.1005 2.4874 -0.0750 23 6 3.4353 1.2719 0.6127 24 1 3.9515 0.3482 0.3509 25 8 3.3875 1.4445 2.0305 26 6 4.4465 0.7896 2.7317 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.4718 2.4691 -1.7521 31 1 2.3088 0.9348 -2.1184 32 1 5.7665 3.7179 -1.5261 33 1 6.1622 3.5031 -4.3140 34 1 5.3240 5.0382 -3.9834 35 1 7.7660 5.5581 -4.9975 36 1 10.2006 7.2229 -6.5601 37 1 5.1834 2.3652 -0.0977 38 1 3.8325 3.4076 0.4440 39 1 5.4047 1.1827 2.3920 40 1 4.3387 0.9683 3.8016 41 1 4.4035 -0.2819 2.5366 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358316919.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:22 Heat of formation + Delta-G solvation = -139.984376 kcal Electronic energy + Delta-G solvation = -24570.793792 eV Core-core repulsion = 20679.803728 eV Total energy + Delta-G solvation = -3890.990064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54175 -39.11811 -38.12658 -37.60570 -36.02573 -34.45533 -33.67428 -31.40697 -30.75477 -28.94251 -27.60271 -26.85800 -26.51501 -24.51816 -23.09636 -21.54487 -19.92262 -19.63264 -18.48248 -17.94236 -17.80944 -16.43489 -16.10757 -15.86517 -15.73742 -15.50519 -15.37219 -15.05836 -14.61829 -14.59010 -14.22516 -14.10941 -13.52255 -13.46914 -13.23212 -12.97714 -12.57182 -12.28587 -12.13234 -12.01359 -11.89066 -11.66902 -11.63114 -11.10818 -10.97193 -10.51163 -10.35340 -10.31341 -10.18875 -9.76529 -9.63068 -8.99365 -8.63484 -8.51474 -8.10420 -6.51553 -3.93690 2.46133 3.01446 3.13417 3.21303 3.24959 3.33588 3.59456 3.74497 4.02465 4.08948 4.27439 4.29951 4.61860 4.81916 4.87209 4.90038 5.04698 5.05432 5.09307 5.13621 5.17046 5.33677 5.35160 5.41743 5.44432 5.51457 5.56736 5.86779 5.99470 6.03651 6.11197 6.70347 6.71713 6.80825 7.05006 7.45567 7.91767 8.09779 8.44781 8.71730 9.04190 9.39038 9.86901 10.65278 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.002715 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.407246 B =10308.906136 C =11256.691437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.373 6.373 3 C 0.079 3.921 4 H 0.091 0.909 5 C 0.110 3.890 6 N -0.634 5.634 7 C 0.726 3.274 8 O -0.590 6.590 9 N -0.721 5.721 10 C 0.128 3.872 11 C 0.429 3.571 12 O -0.598 6.598 13 N -0.548 5.548 14 C -0.306 4.306 15 H 0.105 0.895 16 C 0.026 3.974 17 N -0.895 5.895 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.082 3.918 23 C 0.082 3.918 24 H 0.091 0.909 25 O -0.372 6.372 26 C 0.029 3.971 27 H 0.088 0.912 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.407 0.593 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.396 0.604 36 H 0.275 0.725 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.038 -11.699 12.389 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C 0.020 3.980 4 H 0.109 0.891 5 C -0.014 4.014 6 N -0.375 5.375 7 C 0.427 3.573 8 O -0.469 6.469 9 N -0.379 5.379 10 C -0.001 4.001 11 C 0.214 3.786 12 O -0.485 6.485 13 N -0.183 5.183 14 C -0.435 4.435 15 H 0.123 0.877 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.761 3.239 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.042 4.042 23 C 0.022 3.978 24 H 0.109 0.891 25 O -0.290 6.290 26 C -0.068 4.068 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.245 0.755 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.061 -11.690 12.177 22.622 hybrid contribution 0.903 0.545 -0.092 1.059 sum -14.157 -11.145 12.085 21.695 Atomic orbital electron populations 1.22859 0.80390 1.03088 1.00404 1.87930 1.20307 1.26106 1.94749 1.23201 0.94600 0.85910 0.94261 0.89087 1.22170 0.85386 0.97158 0.96652 1.47135 1.22553 1.60617 1.07229 1.15277 0.80873 0.78482 0.82651 1.90917 1.65757 1.65618 1.24561 1.44782 1.20355 1.59311 1.13420 1.20819 0.93622 0.98180 0.87437 1.19731 0.86701 0.85315 0.86820 1.90483 1.74294 1.64787 1.18951 1.41777 1.18701 1.47627 1.10201 1.19676 0.95416 1.31640 0.96764 0.87739 1.25327 1.00071 0.97471 0.94838 1.69608 1.39174 1.43172 1.01503 0.85868 0.80899 0.79299 0.77869 1.19782 1.20850 1.19780 1.22626 0.99586 0.99205 0.82804 1.23203 0.95073 0.97966 0.81517 0.89059 1.87889 1.49771 1.74557 1.16787 1.22885 0.89990 0.96518 0.97364 0.89347 0.93618 0.93594 0.90792 0.90153 0.75522 0.89901 0.89878 0.76987 0.91521 0.89667 0.89959 0.93396 0.89274 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.88 101.05 1.10 1.29 16 2 O -0.37 -3.67 10.43 -35.23 -0.37 -4.04 16 3 C 0.08 0.77 3.14 -24.90 -0.08 0.69 16 4 H 0.09 0.79 7.89 -51.93 -0.41 0.38 16 5 C 0.11 1.27 6.64 -3.07 -0.02 1.25 16 6 N -0.63 -8.62 3.33 -176.38 -0.59 -9.20 16 7 C 0.73 12.52 8.49 -86.91 -0.74 11.78 16 8 O -0.59 -11.98 16.67 5.30 0.09 -11.89 16 9 N -0.72 -12.64 5.49 -66.42 -0.36 -13.01 16 10 C 0.13 2.41 6.15 -5.20 -0.03 2.38 16 11 C 0.43 9.87 7.85 -10.99 -0.09 9.79 16 12 O -0.60 -15.28 15.24 5.56 0.08 -15.19 16 13 N -0.55 -13.61 5.29 -10.96 -0.06 -13.67 16 14 C -0.31 -8.29 9.68 -14.93 -0.14 -8.43 16 15 H 0.10 2.94 7.16 -52.48 -0.38 2.56 16 16 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 17 N -0.89 -23.89 13.05 55.50 0.72 -23.16 16 18 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 C 0.08 0.91 6.30 -2.65 -0.02 0.89 16 23 C 0.08 0.81 3.25 -24.70 -0.08 0.73 16 24 H 0.09 0.90 7.83 -51.93 -0.41 0.49 16 25 O -0.37 -3.70 10.52 -35.23 -0.37 -4.07 16 26 C 0.03 0.21 10.85 101.05 1.10 1.31 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.27 8.11 -51.92 -0.42 -0.16 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 32 H 0.41 6.97 5.92 -40.82 -0.24 6.73 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.40 9.47 7.90 -40.82 -0.32 9.14 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.09 0.93 7.31 -51.93 -0.38 0.55 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.31 8.12 -51.93 -0.42 -0.11 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -32.68 351.35 -5.59 -38.27 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -5.91 Total: 12.95 kcal Atomic # 6 Polarization: 21.35 SS G_CDS: 0.90 Total: 22.25 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.29 Total: -59.04 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.57 Total: -35.20 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.68 -5.59 -38.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358316919.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.719 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds