Wall clock time and date at job start Tue Mar 31 2020 03:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39873 * 126.03636 * 2 1 4 4 N 1.30834 * 108.19939 * 179.97438 * 3 2 1 5 5 N 1.40085 * 108.20804 * 359.78495 * 4 3 2 6 6 C 1.46498 * 126.03992 * 180.23274 * 5 4 3 7 7 C 1.34946 * 107.92601 * 0.35979 * 5 4 3 8 8 S 1.76197 * 126.13109 * 179.90631 * 7 5 4 9 9 O 1.42098 * 106.40349 * 203.23012 * 8 7 5 10 10 O 1.42101 * 106.39944 * 336.14911 * 8 7 5 11 11 N 1.65596 * 107.21702 * 89.68778 * 8 7 5 12 12 C 1.46502 * 120.00226 * 65.00521 * 11 8 7 13 13 C 1.52994 * 109.47482 * 164.99764 * 12 11 8 14 14 C 1.53005 * 109.47293 * 300.00115 * 13 12 11 15 15 C 1.52999 * 109.47184 * 59.99873 * 13 12 11 16 16 C 1.50702 * 109.47455 * 179.97438 * 13 12 11 17 17 H 1.08000 * 119.99637 * 1.35913 * 16 13 12 18 18 C 1.37874 * 119.99912 * 181.35946 * 16 13 12 19 19 N 1.31519 * 119.99477 * 193.96411 * 18 16 13 20 20 Si 1.86796 * 120.00358 * 13.96582 * 18 16 13 21 21 H 1.48492 * 109.47473 * 84.55622 * 20 18 16 22 22 H 1.48504 * 109.46798 * 204.55415 * 20 18 16 23 23 H 1.48503 * 109.46959 * 324.54912 * 20 18 16 24 24 H 1.08998 * 109.47239 * 270.02125 * 1 2 3 25 25 H 1.08997 * 109.47474 * 30.02457 * 1 2 3 26 26 H 1.09004 * 109.46783 * 150.02347 * 1 2 3 27 27 H 1.07997 * 125.89793 * 359.94821 * 3 2 1 28 28 H 1.09001 * 109.46923 * 270.15156 * 6 5 4 29 29 H 1.09005 * 109.47332 * 30.14501 * 6 5 4 30 30 H 1.08996 * 109.47416 * 150.15445 * 6 5 4 31 31 H 0.97008 * 120.00079 * 244.99969 * 11 8 7 32 32 H 1.08999 * 109.46956 * 284.99594 * 12 11 8 33 33 H 1.08999 * 109.46898 * 44.99295 * 12 11 8 34 34 H 1.09000 * 109.47073 * 69.32873 * 14 13 12 35 35 H 1.08993 * 109.47489 * 189.33413 * 14 13 12 36 36 H 1.09004 * 109.46458 * 309.33014 * 14 13 12 37 37 H 1.08998 * 109.47346 * 59.99662 * 15 13 12 38 38 H 1.09000 * 109.47475 * 180.02562 * 15 13 12 39 39 H 1.09001 * 109.47251 * 300.00161 * 15 13 12 40 40 H 0.97006 * 119.99667 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5753 0.7303 0.0006 5 7 3.5844 -0.6705 0.0059 6 6 4.7746 -1.5247 0.0131 7 6 2.3032 -1.0942 0.0005 8 16 1.7636 -2.7715 0.0016 9 8 0.4509 -2.7711 -0.5426 10 8 2.8303 -3.5365 -0.5426 11 7 1.6138 -3.2372 1.5836 12 6 0.6098 -2.6035 2.4419 13 6 0.4168 -3.4427 3.7065 14 6 -0.0549 -4.8461 3.3203 15 6 1.7442 -3.5406 4.4611 16 6 -0.6156 -2.7905 4.5896 17 1 -1.1029 -1.8813 4.2699 18 6 -0.9379 -3.3546 5.8057 19 7 -2.0141 -2.9584 6.4496 20 14 0.1537 -4.6814 6.5386 21 1 1.2736 -4.0476 7.2797 22 1 -0.6437 -5.5202 7.4692 23 1 0.6988 -5.5313 5.4497 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 1.9950 2.1578 -0.0008 28 1 5.0747 -1.7382 -1.0128 29 1 5.5863 -1.0126 0.5299 30 1 4.5484 -2.4587 0.5273 31 1 2.1909 -3.9297 1.9421 32 1 0.9458 -1.6038 2.7171 33 1 -0.3358 -2.5337 1.9043 34 1 0.7564 -5.3782 2.8236 35 1 -0.3505 -5.3898 4.2174 36 1 -0.9067 -4.7698 2.6444 37 1 2.0803 -2.5409 4.7362 38 1 1.6069 -4.1389 5.3618 39 1 2.4912 -4.0121 3.8226 40 1 -2.2411 -3.3556 7.3051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416528950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:53 Heat of formation + Delta-G solvation = 19.960563 kcal Electronic energy + Delta-G solvation = -23947.230061 eV Core-core repulsion = 20505.928601 eV Total energy + Delta-G solvation = -3441.301460 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36432 -37.57270 -37.22549 -35.93135 -33.80017 -33.35205 -31.91216 -31.36804 -28.27606 -26.43341 -25.80825 -25.45692 -24.67301 -22.18551 -20.97688 -19.37429 -19.29293 -17.86573 -17.25101 -16.14674 -15.94919 -15.67823 -15.42333 -15.18407 -14.49628 -14.08213 -13.93086 -13.65394 -13.43741 -13.02041 -12.89481 -12.77861 -12.55095 -12.44466 -12.31852 -12.17429 -12.06055 -11.90688 -11.86490 -11.64837 -11.10015 -10.81568 -10.51204 -10.27267 -10.22738 -10.09632 -9.87949 -9.22638 -9.15332 -8.71848 -8.58907 -8.50215 -6.19111 -4.16722 0.29848 1.16424 2.24594 2.47353 3.08312 3.21504 3.28901 3.36530 3.64788 4.24016 4.32277 4.41660 4.95550 5.02060 5.03948 5.12180 5.24955 5.31699 5.44421 5.45646 5.81792 5.87364 5.93639 5.95259 6.00600 6.20334 6.32285 6.40232 6.51580 6.52836 6.59037 6.62253 6.63083 6.86305 7.11273 7.20107 7.32663 7.39388 7.68504 8.38686 8.84628 9.45081 10.93699 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.020334 B = 0.005088 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.642929 B = 5501.348866 C = 5736.638301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 C 0.029 3.971 4 N -0.259 5.259 5 N -0.313 5.313 6 C 0.088 3.912 7 C -0.497 4.497 8 S 2.710 3.290 9 O -0.935 6.935 10 O -0.966 6.966 11 N -1.106 6.106 12 C 0.136 3.864 13 C 0.037 3.963 14 C -0.144 4.144 15 C -0.150 4.150 16 C -0.515 4.515 17 H 0.078 0.922 18 C 0.077 3.923 19 N -0.890 5.890 20 Si 0.883 3.117 21 H -0.287 1.287 22 H -0.305 1.305 23 H -0.248 1.248 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.192 0.808 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.417 0.583 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.025 0.975 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.043 0.957 39 H 0.030 0.970 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.970 2.825 -11.819 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.123 4.123 3 C -0.155 4.155 4 N -0.083 5.083 5 N -0.098 5.098 6 C -0.052 4.052 7 C -0.705 4.705 8 S 2.793 3.207 9 O -0.924 6.924 10 O -0.955 6.955 11 N -0.870 5.870 12 C 0.012 3.988 13 C 0.034 3.966 14 C -0.201 4.201 15 C -0.207 4.207 16 C -0.553 4.553 17 H 0.096 0.904 18 C -0.126 4.126 19 N -0.526 5.526 20 Si 0.715 3.285 21 H -0.214 1.214 22 H -0.234 1.234 23 H -0.174 1.174 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.209 0.791 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.927 2.751 -12.477 16.812 hybrid contribution 0.345 -0.350 1.160 1.260 sum 11.273 2.401 -11.317 16.153 Atomic orbital electron populations 1.20839 0.87784 1.05248 1.04156 1.20288 0.97679 0.90263 1.04023 1.24033 0.89604 1.00160 1.01732 1.77186 1.21797 0.89447 1.19901 1.48022 1.03811 1.04198 1.53781 1.22231 0.84975 0.93253 1.04780 1.33483 0.91882 1.24980 1.20118 1.01648 0.73997 0.71960 0.73097 1.93579 1.36797 1.85356 1.76696 1.93564 1.56679 1.68087 1.77200 1.55524 1.49227 1.51515 1.30737 1.21576 0.89246 0.95880 0.92113 1.18627 0.93716 0.92842 0.91418 1.22295 0.99346 0.97700 1.00800 1.22378 0.98067 1.00758 0.99471 1.20716 1.20909 1.11641 1.02079 0.90417 1.24955 0.94385 0.96178 0.97084 1.69947 1.23235 1.43566 1.15849 0.87335 0.79908 0.82648 0.78576 1.21443 1.23353 1.17371 0.89855 0.90717 0.88086 0.79085 0.89467 0.88606 0.88409 0.74607 0.92172 0.90192 0.95646 0.92602 0.93096 0.92811 0.93902 0.95084 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 10.04 36.01 0.36 -1.16 16 2 C -0.11 -1.49 6.09 -105.05 -0.64 -2.13 16 3 C 0.03 0.37 11.96 -17.36 -0.21 0.17 16 4 N -0.26 -3.70 12.58 30.62 0.39 -3.31 16 5 N -0.31 -4.33 4.01 -67.26 -0.27 -4.60 16 6 C 0.09 0.92 10.54 59.85 0.63 1.56 16 7 C -0.50 -7.14 6.97 -17.22 -0.12 -7.26 16 8 S 2.71 39.25 5.62 -107.50 -0.60 38.64 16 9 O -0.94 -15.39 14.73 -57.17 -0.84 -16.24 16 10 O -0.97 -14.51 15.79 -57.17 -0.90 -15.42 16 11 N -1.11 -16.15 5.43 -10.61 -0.06 -16.21 16 12 C 0.14 2.37 5.04 -4.04 -0.02 2.35 16 13 C 0.04 0.75 0.51 -155.66 -0.08 0.67 16 14 C -0.14 -2.87 7.54 37.16 0.28 -2.59 16 15 C -0.15 -2.88 7.52 37.16 0.28 -2.60 16 16 C -0.52 -13.09 8.62 -34.44 -0.30 -13.39 16 17 H 0.08 2.13 7.99 -52.49 -0.42 1.71 16 18 C 0.08 2.07 5.32 -17.82 -0.09 1.97 16 19 N -0.89 -25.78 13.96 55.43 0.77 -25.00 16 20 Si 0.88 20.57 22.79 -169.99 -3.87 16.70 16 21 H -0.29 -6.67 7.10 56.52 0.40 -6.27 16 22 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.25 -5.26 4.65 56.52 0.26 -5.00 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.10 1.37 5.55 -51.93 -0.29 1.09 16 27 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 0.96 6.69 -51.93 -0.35 0.61 16 31 H 0.42 5.48 6.53 -34.47 -0.23 5.26 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.41 7.75 -51.93 -0.40 1.00 16 34 H 0.02 0.43 7.47 -51.93 -0.39 0.04 16 35 H 0.06 1.19 4.30 -51.93 -0.22 0.96 16 36 H 0.05 1.00 8.12 -51.93 -0.42 0.57 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.04 0.89 2.25 -51.93 -0.12 0.77 16 39 H 0.03 0.49 6.60 -51.93 -0.34 0.14 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -32.07 322.40 -5.85 -37.92 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.41 Total: 5.07 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 0.09 Total: -22.42 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.83 Total: -49.12 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.74 Total: -31.65 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -3.87 Total: 16.70 kcal Atomic # 16 Polarization: 39.25 SS G_CDS: -0.60 Total: 38.64 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.07 -5.85 -37.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416528950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.881 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds