Wall clock time and date at job start Tue Mar 31 2020 03:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47212 * 2 1 4 4 C 1.50695 * 109.47088 * 239.99950 * 2 1 3 5 5 O 1.21290 * 119.99609 * 239.99837 * 4 2 1 6 6 N 1.34775 * 120.00284 * 60.00245 * 4 2 1 7 7 C 1.46497 * 119.99960 * 179.97438 * 6 4 2 8 8 C 1.50703 * 109.47218 * 180.02562 * 7 6 4 9 9 H 1.08001 * 119.99572 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99983 * 180.02562 * 8 7 6 11 11 N 1.31508 * 120.00418 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99794 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47016 * 89.99442 * 12 10 8 14 14 H 1.48502 * 109.47151 * 209.99719 * 12 10 8 15 15 H 1.48507 * 109.47074 * 329.99788 * 12 10 8 16 16 N 1.46501 * 109.46952 * 119.99774 * 2 1 3 17 17 N 1.28735 * 125.33954 * 59.97634 * 16 2 1 18 18 N 1.28990 * 108.94052 * 179.74914 * 17 16 2 19 19 C 1.34041 * 107.27091 * 0.42854 * 18 17 16 20 20 C 1.48456 * 126.67585 * 179.83526 * 19 18 17 21 21 C 1.39304 * 120.11572 * 359.69312 * 20 19 18 22 22 C 1.38028 * 119.87938 * 179.97438 * 21 20 19 23 23 C 1.38321 * 120.11993 * 359.97438 * 22 21 20 24 24 C 1.38314 * 120.23656 * 0.28015 * 23 22 21 25 25 C 1.38037 * 120.11273 * 359.48379 * 24 23 22 26 26 N 1.28872 * 125.34301 * 240.00155 * 16 2 1 27 27 H 1.08997 * 109.47212 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47348 * 300.00351 * 1 2 3 29 29 H 1.09006 * 109.46818 * 60.00077 * 1 2 3 30 30 H 0.96991 * 120.00003 * 359.97438 * 6 4 2 31 31 H 1.09004 * 109.46984 * 300.00030 * 7 6 4 32 32 H 1.08997 * 109.47240 * 60.00002 * 7 6 4 33 33 H 0.96999 * 120.00436 * 179.97438 * 11 10 8 34 34 H 1.07994 * 120.05852 * 359.97438 * 21 20 19 35 35 H 1.08006 * 119.94251 * 179.97438 * 22 21 20 36 36 H 1.08002 * 119.87964 * 179.97438 * 23 22 21 37 37 H 1.07993 * 119.94139 * 179.74847 * 24 23 22 38 38 H 1.08006 * 120.05462 * 180.26019 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1190 6 7 1.7068 -0.2500 -2.4545 7 6 2.1956 -0.9403 -3.6506 8 6 1.6938 -0.2296 -4.8812 9 1 1.0725 0.6482 -4.7821 10 6 2.0270 -0.7007 -6.1334 11 7 2.7831 -1.7699 -6.2541 12 14 1.4043 0.1798 -7.6587 13 1 2.3824 1.2216 -8.0628 14 1 1.2395 -0.7994 -8.7629 15 1 0.0960 0.8172 -7.3629 16 7 2.0183 -0.6906 1.1962 17 7 1.7711 -1.9166 1.5013 18 7 2.3597 -2.1980 2.6141 19 6 2.9938 -1.0891 3.0204 20 6 3.8043 -0.9329 4.2543 21 6 3.9598 -2.0059 5.1290 22 6 4.7149 -1.8554 6.2745 23 6 5.3170 -0.6420 6.5546 24 6 5.1615 0.4282 5.6922 25 6 4.4125 0.2870 4.5413 26 7 2.7623 -0.1660 2.1084 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.1489 0.5384 -2.5436 31 1 3.2857 -0.9399 -3.6504 32 1 1.8327 -1.9681 -3.6508 33 1 3.0172 -2.1016 -7.1350 34 1 3.4904 -2.9538 4.9110 35 1 4.8358 -2.6865 6.9536 36 1 5.9066 -0.5284 7.4523 37 1 5.6304 1.3745 5.9175 38 1 4.2951 1.1221 3.8665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427630536.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:35 Heat of formation + Delta-G solvation = 114.596541 kcal Electronic energy + Delta-G solvation = -22936.314050 eV Core-core repulsion = 19395.965114 eV Total energy + Delta-G solvation = -3540.348936 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.19466 -39.48861 -39.16507 -35.49859 -34.50206 -33.47648 -32.76929 -32.02167 -31.15410 -30.00031 -27.44704 -25.69993 -24.49344 -23.77766 -22.72346 -21.78184 -21.59687 -19.99229 -18.30533 -17.46840 -17.09496 -16.71564 -15.97708 -15.69401 -15.24724 -15.03127 -14.89256 -14.32976 -14.12525 -13.66303 -13.54910 -13.34362 -13.29350 -12.90179 -12.72947 -12.41012 -12.11865 -11.98527 -11.72786 -11.51141 -11.32737 -11.09298 -10.99285 -10.96896 -10.84454 -10.75755 -10.42232 -9.54082 -9.41099 -9.18614 -8.88504 -8.76368 -8.15468 -6.26611 -4.35149 0.65824 1.16941 1.40456 1.78936 2.44610 2.85592 3.18126 3.24165 3.26483 3.52998 3.65909 3.72117 4.21939 4.26850 4.45218 4.57995 4.72772 4.87209 4.88043 4.92291 5.09875 5.18023 5.20033 5.32085 5.39137 5.43827 5.67482 5.70825 5.81410 5.90484 6.11386 6.24513 6.26348 6.31063 6.67904 7.08597 7.11053 7.34754 7.48496 7.82540 8.29377 8.44929 8.53904 8.78312 9.31508 10.83387 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.034061 B = 0.002527 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.850022 B =11078.493844 C =11181.045086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 H 0.145 0.855 4 C 0.493 3.507 5 O -0.527 6.527 6 N -0.697 5.697 7 C 0.251 3.749 8 C -0.547 4.547 9 H 0.065 0.935 10 C 0.065 3.935 11 N -0.883 5.883 12 Si 0.906 3.094 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.272 1.272 16 N -0.116 5.116 17 N -0.023 5.023 18 N -0.281 5.281 19 C 0.200 3.800 20 C -0.005 4.005 21 C -0.080 4.080 22 C -0.123 4.123 23 C -0.107 4.107 24 C -0.124 4.124 25 C -0.084 4.084 26 N -0.302 5.302 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.394 0.606 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.268 0.732 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 6.865 22.214 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.030 3.970 3 H 0.163 0.837 4 C 0.273 3.727 5 O -0.404 6.404 6 N -0.346 5.346 7 C 0.131 3.869 8 C -0.586 4.586 9 H 0.083 0.917 10 C -0.139 4.139 11 N -0.520 5.520 12 Si 0.733 3.267 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.197 1.197 16 N -0.028 5.028 17 N -0.016 5.016 18 N -0.153 5.153 19 C -0.080 4.080 20 C -0.008 4.008 21 C -0.100 4.100 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.142 4.142 25 C -0.104 4.104 26 N -0.152 5.152 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.119 0.881 30 H 0.227 0.773 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.550 5.721 21.553 22.307 hybrid contribution -0.158 1.068 -0.774 1.328 sum -0.707 6.790 20.780 21.872 Atomic orbital electron populations 1.22185 0.89218 1.05592 1.04811 1.21920 0.97799 0.97680 0.79644 0.83736 1.19913 0.82529 0.85693 0.84555 1.90803 1.37786 1.25680 1.86101 1.46377 1.51325 1.31235 1.05642 1.19238 0.95527 0.93062 0.79113 1.21160 1.33689 1.13392 0.90317 0.91688 1.24956 0.94745 0.94931 0.99318 1.69965 1.35338 1.22247 1.24447 0.86381 0.79168 0.79253 0.81911 1.20400 1.20932 1.19670 1.49605 1.29707 1.07107 1.16352 1.78990 1.16697 0.97912 1.08035 1.76032 1.11194 1.23260 1.04812 1.23536 1.00884 0.86919 0.96625 1.17292 0.98028 0.95322 0.90140 1.21236 0.97266 0.98351 0.93124 1.21103 0.97891 0.97930 0.97155 1.21310 0.98825 0.93120 0.99362 1.21086 0.99364 0.99289 0.94418 1.21221 0.95640 0.96425 0.97093 1.74790 1.13173 1.26893 1.00313 0.89732 0.90497 0.88078 0.77254 0.95222 0.95000 0.92263 0.84633 0.85323 0.85718 0.85405 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.28 37.16 0.34 -1.30 16 2 C 0.13 1.86 3.64 -69.08 -0.25 1.61 16 3 H 0.15 1.52 8.14 -51.93 -0.42 1.10 16 4 C 0.49 9.30 7.18 -10.99 -0.08 9.22 16 5 O -0.53 -12.71 15.85 5.55 0.09 -12.62 16 6 N -0.70 -13.25 5.44 -61.47 -0.33 -13.59 16 7 C 0.25 6.29 5.43 -5.19 -0.03 6.26 16 8 C -0.55 -14.06 9.28 -34.44 -0.32 -14.38 16 9 H 0.07 1.53 7.60 -52.49 -0.40 1.13 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.88 -25.36 13.29 55.43 0.74 -24.63 16 12 Si 0.91 20.12 29.54 -169.99 -5.02 15.09 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 N -0.12 -1.93 3.43 -5.90 -0.02 -1.95 16 17 N -0.02 -0.43 12.27 60.35 0.74 0.31 16 18 N -0.28 -5.00 12.23 32.15 0.39 -4.60 16 19 C 0.20 3.18 7.94 -156.31 -1.24 1.94 16 20 C 0.00 -0.06 5.88 -104.89 -0.62 -0.68 16 21 C -0.08 -0.88 9.70 -39.26 -0.38 -1.26 16 22 C -0.12 -1.05 10.03 -39.63 -0.40 -1.44 16 23 C -0.11 -0.83 10.04 -39.52 -0.40 -1.23 16 24 C -0.12 -1.04 10.04 -39.63 -0.40 -1.44 16 25 C -0.08 -0.90 9.70 -39.26 -0.38 -1.28 16 26 N -0.30 -4.85 11.85 32.17 0.38 -4.47 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 0.82 7.56 -51.93 -0.39 0.42 16 30 H 0.39 5.97 7.74 -40.82 -0.32 5.65 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.14 1.47 7.89 -52.49 -0.41 1.06 16 35 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 1.36 7.88 -52.48 -0.41 0.94 16 LS Contribution 340.67 15.07 5.13 5.13 Total: -1.00 -34.32 340.67 -6.60 -40.91 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.45 Total: 2.74 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -4.24 Total: -2.34 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 1.90 Total: -48.93 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.32 -6.60 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427630536.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.509 kcal (2) G-P(sol) polarization free energy of solvation -34.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds