Wall clock time and date at job start Tue Mar 31 2020 03:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34965 * 125.51292 * 2 1 4 4 C 1.41245 * 108.24377 * 179.97438 * 3 2 1 5 5 N 1.32812 * 126.38892 * 179.97438 * 4 3 2 6 6 C 1.34205 * 119.99700 * 0.02562 * 5 4 3 7 7 O 1.22057 * 120.00344 * 359.97438 * 6 5 4 8 8 C 1.46394 * 119.99748 * 179.97438 * 6 5 4 9 9 C 1.35315 * 119.99763 * 179.97438 * 8 6 5 10 10 C 1.46185 * 119.99851 * 179.97438 * 9 8 6 11 11 C 1.37998 * 126.93839 * 179.97438 * 10 9 8 12 12 N 1.33375 * 107.58952 * 180.28199 * 11 10 9 13 13 C 1.30794 * 109.77445 * 359.58855 * 12 11 10 14 14 N 1.34736 * 109.41503 * 0.41810 * 13 12 11 15 15 H 0.96990 * 126.45219 * 179.76719 * 14 13 12 16 16 N 1.37542 * 107.22415 * 0.22506 * 4 3 2 17 17 H 0.97000 * 126.37243 * 179.74154 * 16 4 3 18 18 N 1.36479 * 125.51470 * 179.97438 * 2 1 3 19 19 C 1.46500 * 125.84847 * 0.04419 * 18 2 1 20 20 C 1.50695 * 109.47262 * 84.99984 * 19 18 2 21 21 H 1.07998 * 120.00226 * 359.97438 * 20 19 18 22 22 C 1.37883 * 119.99905 * 179.97438 * 20 19 18 23 23 N 1.31513 * 119.99676 * 179.97438 * 22 20 19 24 24 Si 1.86794 * 119.99914 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47474 * 89.99890 * 24 22 20 26 26 H 1.48507 * 109.47130 * 210.00037 * 24 22 20 27 27 H 1.48500 * 109.47292 * 330.00008 * 24 22 20 28 28 H 1.08999 * 109.47116 * 90.02722 * 1 2 3 29 29 H 1.09003 * 109.46916 * 210.02069 * 1 2 3 30 30 H 1.09001 * 109.47182 * 330.02026 * 1 2 3 31 31 H 1.07992 * 125.87621 * 0.02562 * 3 2 1 32 32 H 1.07994 * 120.00051 * 0.02562 * 8 6 5 33 33 H 1.07994 * 120.00186 * 0.02562 * 9 8 6 34 34 H 1.08002 * 126.20264 * 0.02562 * 11 10 9 35 35 H 1.08003 * 125.29723 * 180.16666 * 13 12 11 36 36 H 1.09000 * 109.46704 * 204.99939 * 19 18 2 37 37 H 1.08997 * 109.46963 * 324.99270 * 19 18 2 38 38 H 0.97000 * 119.99677 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2910 1.0986 0.0000 4 6 3.6398 0.6793 0.0006 5 7 4.7096 1.4663 0.0003 6 6 4.5613 2.8002 -0.0001 7 8 3.4433 3.2900 -0.0007 8 6 5.7405 3.6677 0.0001 9 6 5.5909 5.0126 -0.0008 10 6 6.7684 5.8789 0.0000 11 6 6.7828 7.2588 -0.0013 12 7 8.0583 7.6486 -0.0062 13 6 8.8412 6.6009 0.0008 14 7 8.0914 5.4815 0.0013 15 1 8.4189 4.5685 0.0027 16 7 3.6387 -0.6961 -0.0042 17 1 4.4193 -1.2720 -0.0085 18 7 2.2999 -1.1109 0.0005 19 6 1.8317 -2.4991 0.0002 20 6 1.5547 -2.9355 -1.4153 21 1 1.7113 -2.2476 -2.2330 22 6 1.1013 -4.2132 -1.6666 23 7 0.8592 -4.5939 -2.9019 24 14 0.8312 -5.4033 -0.2524 25 1 -0.5622 -5.2737 0.2444 26 1 1.0615 -6.7927 -0.7238 27 1 1.7796 -5.0899 0.8464 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5135 31 1 1.9464 2.1220 0.0004 32 1 6.7297 3.2344 0.0002 33 1 4.6017 5.4459 -0.0014 34 1 5.9179 7.9057 -0.0027 35 1 9.9209 6.6287 0.0016 36 1 2.5979 -3.1409 0.4350 37 1 0.9176 -2.5743 0.5892 38 1 0.5406 -5.4929 -3.0787 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492867030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:27:44 Heat of formation + Delta-G solvation = 115.351023 kcal Electronic energy + Delta-G solvation = -22458.449907 eV Core-core repulsion = 18918.133688 eV Total energy + Delta-G solvation = -3540.316219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.81845 -42.45466 -39.98638 -36.11471 -35.01379 -34.71301 -33.76319 -33.15934 -32.67033 -30.02312 -28.88711 -28.75670 -25.59205 -24.22837 -23.10570 -22.23160 -21.59658 -21.10219 -19.96129 -19.30603 -18.92903 -18.41762 -17.26830 -16.80673 -16.61152 -16.19695 -15.93578 -15.73965 -15.21965 -15.12391 -14.75962 -14.68581 -14.41620 -14.30410 -14.10468 -13.91798 -13.77359 -13.31237 -13.16308 -12.93075 -12.60694 -12.27402 -11.86710 -11.51008 -11.20993 -11.17945 -10.93474 -10.92912 -10.90731 -10.38053 -9.99584 -8.98653 -8.46454 -8.41217 -6.57802 -0.37501 0.31579 0.50938 1.37338 1.38141 1.39321 1.47241 1.80859 2.15989 2.23383 2.24026 2.63692 2.90783 3.12835 3.40214 3.62009 3.82477 4.07559 4.12608 4.21193 4.25989 4.38020 4.41452 4.55264 4.70239 4.76393 4.79171 4.79909 4.89318 5.02378 5.12547 5.27560 5.43824 5.45642 5.66147 5.87113 5.99518 6.10519 6.44286 6.46335 6.52813 6.75810 7.02222 7.08092 7.76823 8.72310 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.037048 B = 0.002352 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.598274 B =11903.093719 C =12257.377975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.200 3.800 3 C -0.347 4.347 4 C 0.457 3.543 5 N -0.705 5.705 6 C 0.507 3.493 7 O -0.610 6.610 8 C -0.182 4.182 9 C 0.002 3.998 10 C -0.030 4.030 11 C 0.007 3.993 12 N -0.536 5.536 13 C 0.209 3.791 14 N -0.552 5.552 15 H 0.435 0.565 16 N -0.464 5.464 17 H 0.454 0.546 18 N -0.346 5.346 19 C 0.232 3.768 20 C -0.562 4.562 21 H 0.032 0.968 22 C 0.026 3.974 23 N -0.933 5.933 24 Si 0.946 3.054 25 H -0.253 1.253 26 H -0.287 1.287 27 H -0.235 1.235 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.177 0.823 32 H 0.133 0.867 33 H 0.144 0.856 34 H 0.189 0.811 35 H 0.251 0.749 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.156 10.858 9.893 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.074 3.926 3 C -0.378 4.378 4 C 0.207 3.793 5 N -0.468 5.468 6 C 0.297 3.703 7 O -0.495 6.495 8 C -0.204 4.204 9 C -0.019 4.019 10 C -0.144 4.144 11 C -0.144 4.144 12 N -0.255 5.255 13 C -0.074 4.074 14 N -0.156 5.156 15 H 0.277 0.723 16 N -0.187 5.187 17 H 0.303 0.697 18 N -0.132 5.132 19 C 0.114 3.886 20 C -0.600 4.600 21 H 0.050 0.950 22 C -0.175 4.175 23 N -0.571 5.571 24 Si 0.768 3.232 25 H -0.178 1.178 26 H -0.213 1.213 27 H -0.158 1.158 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.194 0.806 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.206 0.794 35 H 0.267 0.733 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.641 11.124 9.774 17.145 hybrid contribution -0.333 -2.126 -0.336 2.178 sum 8.307 8.998 9.437 15.461 Atomic orbital electron populations 1.20830 0.83403 1.05998 1.05039 1.21913 0.96107 0.84483 0.90088 1.22246 0.91384 1.00509 1.23668 1.19398 0.92203 0.82661 0.85056 1.69041 1.28275 1.05513 1.43969 1.19536 0.88577 0.86372 0.75794 1.90629 1.28249 1.79491 1.51171 1.22510 0.98008 0.92991 1.06927 1.21468 0.95983 0.91773 0.92635 1.20169 0.84349 0.94830 1.15096 1.23294 0.95793 0.91335 1.04026 1.70104 1.02509 1.31345 1.21497 1.25870 1.00440 0.79620 1.01446 1.43455 1.05760 1.11553 1.54794 0.72333 1.44507 0.98832 1.04906 1.70465 0.69676 1.47440 0.93360 1.07617 1.64765 1.20262 0.97782 0.73002 0.97526 1.21306 1.47734 0.99144 0.91814 0.95004 1.25797 0.93464 0.99596 0.98674 1.70028 1.44733 1.20329 1.21979 0.85752 0.80785 0.77639 0.79065 1.17754 1.21313 1.15789 0.89010 0.88823 0.86475 0.80614 0.84901 0.83800 0.79351 0.73284 0.91512 0.89154 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.34 10.09 71.24 0.72 -1.62 16 2 C 0.20 6.67 6.92 41.08 0.28 6.95 16 3 C -0.35 -12.99 9.41 22.26 0.21 -12.78 16 4 C 0.46 17.70 8.08 133.95 1.08 18.78 16 5 N -0.70 -27.65 10.53 -311.96 -3.28 -30.93 16 6 C 0.51 19.44 7.66 86.46 0.66 20.10 16 7 O -0.61 -25.74 13.17 -5.50 -0.07 -25.81 16 8 C -0.18 -5.28 9.77 23.72 0.23 -5.05 16 9 C 0.00 0.06 9.67 23.66 0.23 0.29 16 10 C -0.03 -0.64 6.97 40.16 0.28 -0.36 16 11 C 0.01 0.16 11.94 84.40 1.01 1.16 16 12 N -0.54 -11.72 11.20 -198.35 -2.22 -13.94 16 13 C 0.21 3.09 12.99 180.27 2.34 5.43 16 14 N -0.55 -8.64 6.05 -187.46 -1.13 -9.78 16 15 H 0.44 4.59 8.13 -92.72 -0.75 3.83 16 16 N -0.46 -16.13 7.39 -54.75 -0.40 -16.53 16 17 H 0.45 13.54 8.96 -213.28 -1.91 11.63 16 18 N -0.35 -12.20 3.64 -337.52 -1.23 -13.42 16 19 C 0.23 8.34 5.00 85.63 0.43 8.77 16 20 C -0.56 -26.79 9.94 25.60 0.25 -26.53 16 21 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 22 C 0.03 1.25 5.47 84.66 0.46 1.72 16 23 N -0.93 -51.45 13.96 21.45 0.30 -51.15 16 24 Si 0.95 34.64 27.47 68.60 1.88 36.52 16 25 H -0.25 -8.69 7.11 99.48 0.71 -7.99 16 26 H -0.29 -10.97 7.11 99.48 0.71 -10.26 16 27 H -0.23 -7.40 6.54 99.48 0.65 -6.75 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.09 2.05 7.14 -2.39 -0.02 2.03 16 30 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.18 6.92 5.76 -2.91 -0.02 6.90 16 32 H 0.13 3.19 7.16 -2.91 -0.02 3.17 16 33 H 0.14 3.76 7.53 -2.91 -0.02 3.74 16 34 H 0.19 3.35 8.06 -2.91 -0.02 3.33 16 35 H 0.25 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.07 2.21 7.20 -2.39 -0.02 2.19 16 37 H 0.09 2.78 6.61 -2.39 -0.02 2.76 16 38 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -73.26 335.30 0.44 -72.82 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: -1.59 Total: 35.37 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: 8.19 Total: 16.86 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -7.97 Total: -135.76 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.07 Total: -25.81 kcal Atomic # 14 Polarization: 34.64 SS G_CDS: 1.88 Total: 36.52 kcal Total: -73.26 0.44 -72.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492867030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.171 kcal (2) G-P(sol) polarization free energy of solvation -73.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds