Wall clock time and date at job start Tue Mar 31 2020 04:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 120.00074 * 2 1 4 4 C 1.53002 * 109.46731 * 276.40691 * 3 2 1 5 5 C 1.47203 * 109.47065 * 185.01761 * 4 3 2 6 6 N 4.80198 * 119.06111 * 339.63314 * 2 1 3 7 7 S 1.65596 * 119.99944 * 179.97438 * 2 1 3 8 8 O 1.42108 * 106.40307 * 341.00949 * 7 2 1 9 9 O 1.42107 * 106.40300 * 208.09269 * 7 2 1 10 10 N 1.65598 * 107.22160 * 94.55160 * 7 2 1 11 11 C 1.46928 * 120.62866 * 266.75577 * 10 7 2 12 12 C 1.53190 * 108.77182 * 233.57982 * 11 10 7 13 13 C 1.53043 * 109.31801 * 305.36654 * 12 11 10 14 14 C 1.53036 * 109.53393 * 61.36258 * 13 12 11 15 15 H 1.08999 * 109.49877 * 58.62551 * 14 13 12 16 16 C 1.50704 * 109.49784 * 178.68493 * 14 13 12 17 17 H 1.08001 * 120.00057 * 114.30449 * 16 14 13 18 18 C 1.37882 * 119.99991 * 294.31400 * 16 14 13 19 19 N 1.31512 * 120.00292 * 155.86482 * 18 16 14 20 20 Si 1.86800 * 119.99600 * 335.86799 * 18 16 14 21 21 H 1.48504 * 109.46870 * 269.99830 * 20 18 16 22 22 H 1.48501 * 109.46955 * 150.00651 * 20 18 16 23 23 H 1.48495 * 109.47466 * 30.00034 * 20 18 16 24 24 C 1.46928 * 120.63213 * 86.72620 * 10 7 2 25 25 H 1.09003 * 109.46838 * 270.00599 * 1 2 3 26 26 H 1.08999 * 109.46911 * 29.99963 * 1 2 3 27 27 H 1.08994 * 109.47505 * 150.00518 * 1 2 3 28 28 H 1.09000 * 109.47625 * 36.40679 * 3 2 1 29 29 H 1.09000 * 109.47610 * 156.41250 * 3 2 1 30 30 H 1.08995 * 109.47629 * 305.01740 * 4 3 2 31 31 H 1.09001 * 109.47331 * 65.02291 * 4 3 2 32 32 H 1.09001 * 109.58849 * 113.79876 * 11 10 7 33 33 H 1.08996 * 109.58518 * 353.37101 * 11 10 7 34 34 H 1.09005 * 109.49546 * 185.41033 * 12 11 10 35 35 H 1.09005 * 109.52501 * 65.33889 * 12 11 10 36 36 H 1.09003 * 109.45703 * 301.34436 * 13 12 11 37 37 H 1.08995 * 109.44873 * 181.37669 * 13 12 11 38 38 H 0.96998 * 119.99569 * 354.95291 * 19 18 16 39 39 H 1.09003 * 109.58586 * 6.63244 * 24 10 7 40 40 H 1.08999 * 109.58692 * 246.20495 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3130 1.7908 -1.4335 5 6 3.1509 3.0010 -1.4489 6 7 3.7975 3.9350 -1.4608 7 16 2.2930 -1.4341 0.0006 8 8 1.3772 -2.4260 0.4447 9 8 3.5351 -1.1801 0.6425 10 7 2.6468 -1.7967 -1.5759 11 6 1.7497 -2.6497 -2.3674 12 6 2.5637 -3.8035 -2.9614 13 6 3.7473 -3.2357 -3.7482 14 6 4.6536 -2.4402 -2.8059 15 1 5.0038 -3.0896 -2.0036 16 6 5.8356 -1.9085 -3.5748 17 1 5.9579 -0.8439 -3.7091 18 6 6.7610 -2.7813 -4.1070 19 7 7.4940 -2.4156 -5.1358 20 14 6.9732 -4.4831 -3.3666 21 1 8.0035 -4.4332 -2.2983 22 1 7.4026 -5.4330 -4.4243 23 1 5.6824 -4.9361 -2.7888 24 6 3.8634 -1.2709 -2.2101 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5137 28 1 1.6630 1.9970 0.6099 29 1 3.1948 1.1125 0.4112 30 1 2.7678 1.0261 -2.0632 31 1 1.3203 2.0314 -1.8138 32 1 1.3045 -2.0645 -3.1720 33 1 0.9646 -3.0489 -1.7254 34 1 1.9311 -4.3895 -3.6283 35 1 2.9331 -4.4405 -2.1577 36 1 3.3780 -2.5798 -4.5366 37 1 4.3140 -4.0540 -4.1922 38 1 7.3338 -1.5613 -5.5662 39 1 4.4728 -0.7603 -1.4644 40 1 3.5905 -0.5732 -3.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594802509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:56 Heat of formation + Delta-G solvation = -52.659883 kcal Electronic energy + Delta-G solvation = -23941.100136 eV Core-core repulsion = 20496.649617 eV Total energy + Delta-G solvation = -3444.450519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.04414 -37.69354 -37.20204 -36.14320 -35.72728 -33.36984 -31.67933 -31.45362 -30.48358 -26.82508 -24.88033 -24.08373 -23.55130 -21.46094 -19.58950 -18.83832 -18.18795 -17.59176 -17.42020 -17.12702 -16.31946 -15.36193 -14.91452 -14.68061 -14.27816 -14.10230 -13.70199 -13.48914 -13.37975 -13.11848 -13.03683 -13.00379 -12.84953 -12.55517 -12.17462 -12.14583 -12.03169 -11.94398 -11.67121 -11.63625 -11.36991 -11.13581 -10.76175 -10.65217 -10.26450 -10.08738 -9.98227 -9.60248 -9.37197 -8.92421 -8.59231 -8.16926 -6.49430 -4.08979 0.58871 2.54774 2.67272 2.89954 3.42292 3.46224 3.49988 3.60738 3.84114 4.35778 4.47309 4.50171 4.66813 4.83285 5.01415 5.07909 5.19510 5.24112 5.28169 5.39771 5.49704 5.54164 5.57924 5.72798 5.74503 5.92724 6.02123 6.14745 6.18668 6.34116 6.35414 6.53812 6.73365 6.87455 6.99778 7.21694 7.42901 7.48151 8.10105 8.35000 8.86408 9.56121 10.87502 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.006047 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.046335 B = 4628.930840 C = 5726.684317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -1.012 6.012 3 C 0.121 3.879 4 C -0.055 4.055 5 C 0.210 3.790 6 N -0.430 5.430 7 S 2.775 3.225 8 O -0.978 6.978 9 O -0.969 6.969 10 N -1.003 6.003 11 C 0.125 3.875 12 C -0.136 4.136 13 C -0.109 4.109 14 C 0.015 3.985 15 H 0.028 0.972 16 C -0.609 4.609 17 H 0.058 0.942 18 C 0.042 3.958 19 N -0.897 5.897 20 Si 1.035 2.965 21 H -0.285 1.285 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.132 3.868 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.270 0.730 39 H 0.080 0.920 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.911 3.673 7.478 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.850 5.850 3 C -0.007 4.007 4 C -0.097 4.097 5 C -0.109 4.109 6 N -0.106 5.106 7 S 2.785 3.215 8 O -0.962 6.962 9 O -0.952 6.952 10 N -0.845 5.845 11 C 0.000 4.000 12 C -0.176 4.176 13 C -0.147 4.147 14 C -0.005 4.005 15 H 0.046 0.954 16 C -0.647 4.647 17 H 0.076 0.924 18 C -0.165 4.165 19 N -0.529 5.529 20 Si 0.862 3.138 21 H -0.212 1.212 22 H -0.214 1.214 23 H -0.199 1.199 24 C 0.008 3.992 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.132 0.868 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.849 3.204 8.150 18.107 hybrid contribution -1.223 1.290 -0.417 1.826 sum -17.072 4.493 7.732 19.273 Atomic orbital electron populations 1.21472 0.78238 1.03219 1.02279 1.58094 1.15467 1.21715 1.89695 1.21231 0.98967 0.86027 0.94426 1.19883 0.98819 0.90179 1.00832 1.28846 0.93934 0.94338 0.93772 1.81250 1.09513 1.12052 1.07823 1.02254 0.73044 0.72730 0.73471 1.93571 1.65383 1.57050 1.80208 1.93618 1.43026 1.85210 1.73365 1.58110 1.32786 1.62000 1.31633 1.21382 0.91621 0.91879 0.95167 1.21977 0.98488 0.96952 1.00138 1.21857 0.95022 0.99479 0.98390 1.19293 0.93765 0.92885 0.94596 0.95409 1.21800 1.09587 0.94857 1.38461 0.92413 1.25658 0.93110 1.03977 0.93754 1.70823 1.41993 1.23145 1.16985 0.84140 0.76714 0.76404 0.76512 1.21159 1.21357 1.19883 1.21694 0.82676 0.97993 0.96801 0.92386 0.90885 0.90800 0.89012 0.87997 0.86662 0.86789 0.91776 0.89997 0.91935 0.92129 0.92806 0.92760 0.92037 0.90138 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.32 59.85 0.62 1.25 16 2 N -1.01 -9.80 3.24 -121.76 -0.39 -10.20 16 3 C 0.12 1.04 5.63 -4.04 -0.02 1.01 16 4 C -0.06 -0.44 6.02 -29.52 -0.18 -0.62 16 5 C 0.21 2.39 15.43 -20.76 -0.32 2.07 16 6 N -0.43 -6.28 18.54 42.16 0.78 -5.50 16 7 S 2.78 40.10 6.10 -107.50 -0.66 39.45 16 8 O -0.98 -15.65 15.57 -57.17 -0.89 -16.54 16 9 O -0.97 -17.32 15.46 -57.17 -0.88 -18.20 16 10 N -1.00 -14.95 3.35 -113.52 -0.38 -15.33 16 11 C 0.12 1.66 6.49 -3.71 -0.02 1.63 16 12 C -0.14 -2.14 6.08 -26.61 -0.16 -2.30 16 13 C -0.11 -2.15 4.72 -26.69 -0.13 -2.27 16 14 C 0.02 0.34 1.80 -91.65 -0.17 0.18 16 15 H 0.03 0.65 6.46 -51.93 -0.34 0.32 16 16 C -0.61 -16.08 8.76 -34.44 -0.30 -16.38 16 17 H 0.06 1.62 7.99 -52.49 -0.42 1.20 16 18 C 0.04 1.16 5.23 -17.82 -0.09 1.06 16 19 N -0.90 -26.63 13.70 55.43 0.76 -25.87 16 20 Si 1.03 24.73 26.49 -169.99 -4.50 20.23 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.03 6.03 56.52 0.34 -5.69 16 24 C 0.13 2.35 4.66 -3.71 -0.02 2.33 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 27 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 28 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.10 1.05 6.96 -51.93 -0.36 0.69 16 30 H 0.12 1.06 5.99 -51.93 -0.31 0.75 16 31 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.98 6.84 -51.93 -0.36 0.62 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 1.15 5.92 -51.93 -0.31 0.84 16 38 H 0.27 7.95 8.73 -40.82 -0.36 7.59 16 39 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 40 H 0.06 0.98 7.19 -51.93 -0.37 0.61 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -33.94 333.63 -7.75 -41.69 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.81 Total: -2.70 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.79 Total: -12.04 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.77 Total: -56.90 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -1.77 Total: -34.75 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -4.50 Total: 20.23 kcal Atomic # 16 Polarization: 40.10 SS G_CDS: -0.66 Total: 39.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.94 -7.75 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594802509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.971 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds