Wall clock time and date at job start Tue Mar 31 2020 04:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 120.00074 * 2 1 4 4 C 1.53002 * 109.46731 * 276.40691 * 3 2 1 5 5 C 1.47203 * 109.47065 * 185.01761 * 4 3 2 6 6 N 4.80198 * 119.06111 * 339.63314 * 2 1 3 7 7 S 1.65596 * 119.99944 * 179.97438 * 2 1 3 8 8 O 1.42108 * 106.40307 * 341.00949 * 7 2 1 9 9 O 1.42107 * 106.40300 * 208.09269 * 7 2 1 10 10 N 1.65598 * 107.22160 * 94.55160 * 7 2 1 11 11 C 1.46928 * 120.62866 * 266.75577 * 10 7 2 12 12 C 1.53190 * 108.77182 * 233.57982 * 11 10 7 13 13 C 1.53043 * 109.31801 * 305.36654 * 12 11 10 14 14 C 1.53036 * 109.53393 * 61.36258 * 13 12 11 15 15 H 1.08999 * 109.49877 * 58.62551 * 14 13 12 16 16 C 1.50704 * 109.49784 * 178.68493 * 14 13 12 17 17 H 1.08001 * 120.00057 * 114.30449 * 16 14 13 18 18 C 1.37882 * 119.99991 * 294.31400 * 16 14 13 19 19 N 1.31512 * 120.00292 * 155.86482 * 18 16 14 20 20 Si 1.86800 * 119.99600 * 335.86799 * 18 16 14 21 21 H 1.48504 * 109.46870 * 269.99830 * 20 18 16 22 22 H 1.48501 * 109.46955 * 150.00651 * 20 18 16 23 23 H 1.48495 * 109.47466 * 30.00034 * 20 18 16 24 24 C 1.46928 * 120.63213 * 86.72620 * 10 7 2 25 25 H 1.09003 * 109.46838 * 270.00599 * 1 2 3 26 26 H 1.08999 * 109.46911 * 29.99963 * 1 2 3 27 27 H 1.08994 * 109.47505 * 150.00518 * 1 2 3 28 28 H 1.09000 * 109.47625 * 36.40679 * 3 2 1 29 29 H 1.09000 * 109.47610 * 156.41250 * 3 2 1 30 30 H 1.08995 * 109.47629 * 305.01740 * 4 3 2 31 31 H 1.09001 * 109.47331 * 65.02291 * 4 3 2 32 32 H 1.09001 * 109.58849 * 113.79876 * 11 10 7 33 33 H 1.08996 * 109.58518 * 353.37101 * 11 10 7 34 34 H 1.09005 * 109.49546 * 185.41033 * 12 11 10 35 35 H 1.09005 * 109.52501 * 65.33889 * 12 11 10 36 36 H 1.09003 * 109.45703 * 301.34436 * 13 12 11 37 37 H 1.08995 * 109.44873 * 181.37669 * 13 12 11 38 38 H 0.96998 * 119.99569 * 354.95291 * 19 18 16 39 39 H 1.09003 * 109.58586 * 6.63244 * 24 10 7 40 40 H 1.08999 * 109.58692 * 246.20495 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3130 1.7908 -1.4335 5 6 3.1509 3.0010 -1.4489 6 7 3.7975 3.9350 -1.4608 7 16 2.2930 -1.4341 0.0006 8 8 1.3772 -2.4260 0.4447 9 8 3.5351 -1.1801 0.6425 10 7 2.6468 -1.7967 -1.5759 11 6 1.7497 -2.6497 -2.3674 12 6 2.5637 -3.8035 -2.9614 13 6 3.7473 -3.2357 -3.7482 14 6 4.6536 -2.4402 -2.8059 15 1 5.0038 -3.0896 -2.0036 16 6 5.8356 -1.9085 -3.5748 17 1 5.9579 -0.8439 -3.7091 18 6 6.7610 -2.7813 -4.1070 19 7 7.4940 -2.4156 -5.1358 20 14 6.9732 -4.4831 -3.3666 21 1 8.0035 -4.4332 -2.2983 22 1 7.4026 -5.4330 -4.4243 23 1 5.6824 -4.9361 -2.7888 24 6 3.8634 -1.2709 -2.2101 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5137 28 1 1.6630 1.9970 0.6099 29 1 3.1948 1.1125 0.4112 30 1 2.7678 1.0261 -2.0632 31 1 1.3203 2.0314 -1.8138 32 1 1.3045 -2.0645 -3.1720 33 1 0.9646 -3.0489 -1.7254 34 1 1.9311 -4.3895 -3.6283 35 1 2.9331 -4.4405 -2.1577 36 1 3.3780 -2.5798 -4.5366 37 1 4.3140 -4.0540 -4.1922 38 1 7.3338 -1.5613 -5.5662 39 1 4.4728 -0.7603 -1.4644 40 1 3.5905 -0.5732 -3.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594802509.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:55 Heat of formation + Delta-G solvation = -77.984935 kcal Electronic energy + Delta-G solvation = -23942.198312 eV Core-core repulsion = 20496.649617 eV Total energy + Delta-G solvation = -3445.548695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.41037 -38.61199 -38.31225 -37.05390 -36.92756 -35.23646 -33.07639 -32.32658 -31.99436 -27.43529 -26.66118 -25.37731 -24.34878 -22.96545 -21.11231 -19.90685 -19.63426 -19.00305 -18.48327 -18.24407 -17.30758 -16.32435 -16.10715 -15.78509 -15.36452 -15.28696 -15.14598 -14.87829 -14.61908 -14.39989 -14.20393 -14.01560 -13.95245 -13.64359 -13.48848 -13.39237 -13.07675 -13.01805 -12.85284 -12.79249 -12.61938 -12.44345 -12.27837 -11.85972 -11.81989 -11.64340 -11.55736 -11.18724 -10.83056 -10.30791 -10.15099 -9.85842 -8.68479 -6.27688 -0.50102 1.48010 1.50446 1.63726 1.70499 1.78741 1.92976 2.44381 2.50011 3.01706 3.05830 3.28787 3.76520 3.84525 3.99298 4.19857 4.25880 4.28482 4.43946 4.47893 4.55201 4.69244 4.71361 4.78701 4.84396 4.91447 4.99421 5.03089 5.08891 5.16556 5.20278 5.26463 5.36897 5.53622 5.57205 5.74967 5.80164 6.09856 6.19751 6.56448 6.67273 7.43477 8.66595 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.006047 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.046335 B = 4628.930840 C = 5726.684317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.998 5.998 3 C 0.118 3.882 4 C -0.050 4.050 5 C 0.237 3.763 6 N -0.494 5.494 7 S 2.787 3.213 8 O -0.994 6.994 9 O -1.011 7.011 10 N -1.005 6.005 11 C 0.122 3.878 12 C -0.135 4.135 13 C -0.107 4.107 14 C 0.005 3.995 15 H 0.012 0.988 16 C -0.604 4.604 17 H 0.028 0.972 18 C -0.008 4.008 19 N -0.933 5.933 20 Si 1.069 2.931 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.247 1.247 24 C 0.145 3.855 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.160 0.840 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.033 0.967 38 H 0.257 0.743 39 H 0.067 0.933 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.631 3.381 8.168 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.839 5.839 3 C -0.010 4.010 4 C -0.092 4.092 5 C -0.081 4.081 6 N -0.172 5.172 7 S 2.797 3.203 8 O -0.977 6.977 9 O -0.995 6.995 10 N -0.845 5.845 11 C -0.003 4.003 12 C -0.174 4.174 13 C -0.145 4.145 14 C -0.016 4.016 15 H 0.030 0.970 16 C -0.642 4.642 17 H 0.047 0.953 18 C -0.208 4.208 19 N -0.569 5.569 20 Si 0.891 3.109 21 H -0.209 1.209 22 H -0.212 1.212 23 H -0.170 1.170 24 C 0.020 3.980 25 H 0.082 0.918 26 H 0.129 0.871 27 H 0.095 0.905 28 H 0.145 0.855 29 H 0.096 0.904 30 H 0.125 0.875 31 H 0.178 0.822 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.600 2.897 8.850 21.700 hybrid contribution -0.137 1.456 -0.594 1.578 sum -19.737 4.352 8.256 21.832 Atomic orbital electron populations 1.21847 0.75669 1.05305 1.03459 1.57669 1.16763 1.20218 1.89218 1.21362 0.98404 0.86031 0.95175 1.20091 1.00332 0.88239 1.00494 1.29425 0.92758 0.94040 0.91857 1.81278 1.11579 1.14411 1.09933 1.01656 0.72284 0.73368 0.72965 1.93545 1.65396 1.58443 1.80352 1.93566 1.45583 1.85964 1.74370 1.58008 1.32102 1.62771 1.31640 1.21616 0.91155 0.91234 0.96279 1.21972 0.97529 0.98021 0.99880 1.21701 0.95999 0.98582 0.98207 1.19331 0.93417 0.94537 0.94342 0.97019 1.22067 1.11058 0.93403 1.37667 0.95321 1.26808 0.93137 1.07189 0.93637 1.70934 1.43953 1.23001 1.18974 0.83713 0.78006 0.73096 0.76053 1.20862 1.21214 1.17035 1.21292 0.83485 0.96334 0.96870 0.91805 0.87087 0.90472 0.85517 0.90401 0.87532 0.82223 0.88599 0.87959 0.88781 0.93382 0.92497 0.94803 0.93450 0.91419 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.32 127.77 1.32 2.01 16 2 N -1.00 -15.76 3.24 -539.14 -1.75 -17.50 16 3 C 0.12 1.64 5.63 86.38 0.49 2.13 16 4 C -0.05 -0.64 6.02 28.79 0.17 -0.46 16 5 C 0.24 5.02 15.43 89.44 1.38 6.40 16 6 N -0.49 -14.35 18.54 20.01 0.37 -13.97 16 7 S 2.79 74.62 6.10 -56.49 -0.34 74.27 16 8 O -0.99 -29.20 15.57 -128.00 -1.99 -31.19 16 9 O -1.01 -35.79 15.46 -128.00 -1.98 -37.77 16 10 N -1.00 -27.43 3.35 -513.07 -1.72 -29.15 16 11 C 0.12 2.73 6.49 86.36 0.56 3.29 16 12 C -0.13 -3.80 6.08 30.67 0.19 -3.62 16 13 C -0.11 -4.03 4.72 30.62 0.14 -3.88 16 14 C 0.00 0.20 1.80 -11.46 -0.02 0.18 16 15 H 0.01 0.55 6.46 -2.39 -0.02 0.53 16 16 C -0.60 -32.67 8.76 25.60 0.22 -32.45 16 17 H 0.03 1.67 7.99 -2.91 -0.02 1.65 16 18 C -0.01 -0.44 5.23 84.66 0.44 0.00 16 19 N -0.93 -57.38 13.70 21.45 0.29 -57.09 16 20 Si 1.07 50.50 26.49 68.60 1.82 52.31 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.25 -10.46 6.03 99.48 0.60 -9.86 16 24 C 0.15 5.02 4.66 86.36 0.40 5.42 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.11 0.16 8.07 -2.39 -0.02 0.14 16 27 H 0.08 0.66 7.67 -2.39 -0.02 0.64 16 28 H 0.13 0.96 8.12 -2.39 -0.02 0.94 16 29 H 0.08 1.52 6.96 -2.39 -0.02 1.50 16 30 H 0.11 1.66 5.99 -2.39 -0.01 1.64 16 31 H 0.16 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 1.96 6.84 -2.39 -0.02 1.94 16 34 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.03 1.39 5.92 -2.39 -0.01 1.37 16 38 H 0.26 15.86 8.73 -92.71 -0.81 15.05 16 39 H 0.07 2.50 7.00 -2.39 -0.02 2.48 16 40 H 0.08 2.37 7.19 -2.39 -0.02 2.36 16 Total: -1.00 -78.38 333.63 0.90 -77.48 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 0.90 Total: 3.57 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 5.30 Total: -20.98 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -2.80 Total: -117.71 kcal Atomic # 8 Polarization: -64.98 SS G_CDS: -3.97 Total: -68.95 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 1.82 Total: 52.31 kcal Atomic # 16 Polarization: 74.62 SS G_CDS: -0.34 Total: 74.27 kcal Total: -78.38 0.90 -77.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594802509.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.502 kcal (2) G-P(sol) polarization free energy of solvation -78.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds