Wall clock time and date at job start Tue Mar 31 2020 04:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00376 * 2 1 4 4 C 1.53001 * 109.47058 * 180.02562 * 3 2 1 5 5 N 1.46488 * 109.47149 * 65.00511 * 4 3 2 6 6 C 1.36825 * 119.99959 * 274.20239 * 5 4 3 7 7 H 1.08008 * 119.99700 * 123.69515 * 6 5 4 8 8 C 1.39066 * 120.00231 * 303.69816 * 6 5 4 9 9 N 1.31350 * 119.99768 * 4.18448 * 8 6 5 10 10 Si 1.86802 * 120.00151 * 184.19020 * 8 6 5 11 11 H 1.48491 * 109.46993 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47242 * 119.99940 * 10 8 6 13 13 H 1.48507 * 109.46790 * 239.99801 * 10 8 6 14 14 C 1.34776 * 120.00321 * 94.20518 * 5 4 3 15 15 O 1.21655 * 120.00086 * 3.20126 * 14 5 4 16 16 C 1.46958 * 120.00271 * 183.20710 * 14 5 4 17 17 C 1.31684 * 118.11254 * 172.48003 * 16 14 5 18 18 C 1.50098 * 123.77046 * 179.56071 * 17 16 14 19 19 H 1.08992 * 109.36280 * 137.25907 * 18 17 16 20 20 O 1.42912 * 109.35517 * 256.98213 * 18 17 16 21 21 C 1.53008 * 110.02687 * 17.11621 * 18 17 16 22 22 H 1.08997 * 109.62498 * 70.00912 * 21 18 17 23 23 O 1.42898 * 109.62779 * 190.59526 * 21 18 17 24 24 C 1.53034 * 108.68173 * 310.20986 * 21 18 17 25 25 H 1.09006 * 109.78747 * 308.32162 * 24 21 18 26 26 O 1.42898 * 109.67478 * 187.80942 * 24 21 18 27 27 C 1.50100 * 118.11244 * 352.49405 * 16 14 5 28 28 H 1.09005 * 109.47057 * 300.00182 * 1 2 3 29 29 H 1.09004 * 109.47160 * 59.99338 * 1 2 3 30 30 H 1.08994 * 109.47352 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46395 * 60.00629 * 3 2 1 32 32 H 1.08995 * 109.47326 * 300.00724 * 3 2 1 33 33 H 1.08998 * 109.47090 * 305.00243 * 4 3 2 34 34 H 1.08997 * 109.46940 * 185.00740 * 4 3 2 35 35 H 0.97005 * 119.99761 * 180.02562 * 9 8 6 36 36 H 1.08000 * 118.11524 * 359.57391 * 17 16 14 37 37 H 0.96699 * 114.00152 * 300.27222 * 20 18 17 38 38 H 0.96698 * 114.00125 * 300.00033 * 23 21 18 39 39 H 0.96695 * 114.00264 * 180.99850 * 26 24 21 40 40 H 1.09001 * 109.35609 * 317.37773 * 27 16 14 41 41 H 1.08993 * 109.36024 * 76.96911 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0142 -0.7988 -1.3644 7 1 3.4668 -1.2915 -2.1545 8 6 4.7579 -1.5498 -0.4608 9 7 5.3564 -0.9590 0.5483 10 14 4.9061 -3.3988 -0.6820 11 1 4.1443 -3.8157 -1.8864 12 1 6.3357 -3.7644 -0.8487 13 1 4.3556 -4.0860 0.5139 14 6 4.3427 1.3365 -2.2946 15 8 4.3644 2.5471 -2.1766 16 6 4.7167 0.7161 -3.5732 17 6 4.9228 1.5037 -4.6082 18 6 5.3183 1.0075 -5.9685 19 1 4.7495 1.5435 -6.7282 20 8 6.7140 1.2398 -6.1701 21 6 5.0317 -0.4911 -6.0834 22 1 3.9548 -0.6568 -6.1106 23 8 5.6304 -1.0043 -7.2751 24 6 5.6302 -1.1994 -4.8660 25 1 6.6758 -0.9138 -4.7500 26 8 5.5356 -2.6148 -5.0382 27 6 4.8415 -0.7788 -3.6242 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6887 1.8462 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5680 0.8409 34 1 3.9786 2.1763 0.0891 35 1 5.8755 -1.4829 1.1784 36 1 4.8004 2.5678 -4.4704 37 1 6.9697 2.1707 -6.1155 38 1 5.3076 -0.5904 -8.0872 39 1 5.8835 -3.1256 -4.2945 40 1 5.3597 -1.1288 -2.7313 41 1 3.8470 -1.2234 -3.6600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597755168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:45 Heat of formation + Delta-G solvation = -183.665816 kcal Electronic energy + Delta-G solvation = -26675.057804 eV Core-core repulsion = 22749.880820 eV Total energy + Delta-G solvation = -3925.176984 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.86246 -38.45394 -37.03782 -36.30258 -35.40755 -34.91732 -33.94142 -31.74530 -29.88476 -28.85005 -28.12904 -25.86572 -25.14902 -22.92943 -22.73701 -21.14890 -19.68857 -18.60390 -17.78980 -17.16601 -16.49426 -16.14055 -15.94292 -15.55085 -15.42826 -14.94806 -14.50648 -14.43900 -14.24755 -13.73497 -13.68582 -13.44211 -13.20090 -12.80120 -12.71942 -12.23542 -12.01937 -11.76733 -11.68980 -11.24502 -11.11077 -11.04743 -10.98405 -10.68931 -10.39423 -10.29812 -10.16103 -9.89540 -9.70060 -9.53092 -9.07751 -8.97353 -8.60533 -8.50678 -7.36556 -6.39790 -4.22431 2.06059 3.07611 3.18635 3.20775 3.99943 4.14866 4.30518 4.44459 4.45849 4.59312 4.72717 4.90488 4.98691 5.38438 5.43599 5.49610 5.61529 5.64837 5.67757 5.71875 5.92599 5.99234 6.01290 6.03489 6.05833 6.24286 6.39417 6.60037 6.65076 6.76064 6.93707 7.19842 7.36336 7.44179 7.72982 7.80812 7.86887 8.01263 8.07747 8.27614 8.97006 9.33859 9.80443 10.60361 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.013840 B = 0.006455 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.696702 B = 4336.693797 C = 5314.091303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.055 3.945 4 C 0.108 3.892 5 N -0.420 5.420 6 C -0.327 4.327 7 H 0.096 0.904 8 C 0.050 3.950 9 N -0.861 5.861 10 Si 0.903 3.097 11 H -0.259 1.259 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.504 3.496 15 O -0.606 6.606 16 C -0.072 4.072 17 C -0.194 4.194 18 C 0.117 3.883 19 H 0.064 0.936 20 O -0.548 6.548 21 C 0.122 3.878 22 H 0.072 0.928 23 O -0.544 6.544 24 C 0.106 3.894 25 H 0.066 0.934 26 O -0.559 6.559 27 C -0.118 4.118 28 H 0.029 0.971 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.271 0.729 36 H 0.122 0.878 37 H 0.375 0.625 38 H 0.367 0.633 39 H 0.375 0.625 40 H 0.132 0.868 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 0.935 -6.583 7.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C -0.022 4.022 4 C -0.015 4.015 5 N -0.137 5.137 6 C -0.455 4.455 7 H 0.113 0.887 8 C -0.157 4.157 9 N -0.496 5.496 10 Si 0.728 3.272 11 H -0.182 1.182 12 H -0.202 1.202 13 H -0.204 1.204 14 C 0.294 3.706 15 O -0.493 6.493 16 C -0.075 4.075 17 C -0.215 4.215 18 C 0.058 3.942 19 H 0.082 0.918 20 O -0.353 6.353 21 C 0.062 3.938 22 H 0.090 0.910 23 O -0.347 6.347 24 C 0.047 3.953 25 H 0.084 0.916 26 O -0.364 6.364 27 C -0.155 4.155 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.139 0.861 37 H 0.222 0.778 38 H 0.212 0.788 39 H 0.222 0.778 40 H 0.150 0.850 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.437 0.439 -6.476 7.344 hybrid contribution -0.428 0.315 0.474 0.712 sum -3.864 0.754 -6.002 7.178 Atomic orbital electron populations 1.22648 0.83531 1.01771 0.98744 1.88171 1.17219 1.27467 1.94987 1.22997 0.96444 0.84435 0.98370 1.21572 0.89282 0.99188 0.91471 1.43104 1.54655 1.06032 1.09887 1.19650 1.28590 0.80629 1.16647 0.88696 1.25620 0.94820 0.99964 0.95316 1.69725 1.30464 1.36634 1.12811 0.86225 0.78453 0.83054 0.79420 1.18245 1.20239 1.20412 1.18665 0.79884 0.86327 0.85747 1.90616 1.59321 1.14578 1.84792 1.20878 0.97362 0.95728 0.93547 1.23049 1.03554 1.00868 0.93989 1.21233 0.83137 0.96062 0.93814 0.91797 1.86640 1.23107 1.30993 1.94596 1.21920 0.96571 0.89635 0.85653 0.91014 1.86669 1.68309 1.64636 1.15081 1.22016 0.99458 0.80964 0.92848 0.91647 1.86476 1.86444 1.16993 1.46493 1.22235 1.02296 0.92460 0.98462 0.95205 0.95108 0.90371 0.94260 0.94591 0.87057 0.90935 0.91894 0.86057 0.77777 0.78754 0.77799 0.85034 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.39 9.98 -35.23 -0.35 -7.74 16 3 C 0.06 1.10 6.28 37.16 0.23 1.34 16 4 C 0.11 2.49 5.57 -4.05 -0.02 2.47 16 5 N -0.42 -10.11 2.42 -116.21 -0.28 -10.39 16 6 C -0.33 -7.70 5.03 -15.02 -0.08 -7.78 16 7 H 0.10 2.19 5.14 -52.48 -0.27 1.92 16 8 C 0.05 1.18 4.91 -17.45 -0.09 1.10 16 9 N -0.86 -21.81 11.45 55.50 0.64 -21.17 16 10 Si 0.90 18.34 29.10 -169.99 -4.95 13.40 16 11 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 12 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 13 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 14 C 0.50 12.06 7.55 -12.73 -0.10 11.97 16 15 O -0.61 -15.61 15.48 5.23 0.08 -15.53 16 16 C -0.07 -1.47 5.76 -103.26 -0.60 -2.07 16 17 C -0.19 -3.45 8.99 -36.47 -0.33 -3.78 16 18 C 0.12 1.73 3.52 -28.17 -0.10 1.63 16 19 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 20 O -0.55 -8.19 12.57 -51.17 -0.64 -8.84 16 21 C 0.12 1.96 3.03 -26.71 -0.08 1.88 16 22 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 23 O -0.54 -8.61 12.77 -60.97 -0.78 -9.39 16 24 C 0.11 1.92 3.23 -26.71 -0.09 1.83 16 25 H 0.07 1.26 7.77 -51.93 -0.40 0.86 16 26 O -0.56 -9.94 13.09 -49.54 -0.65 -10.59 16 27 C -0.12 -2.28 3.51 -28.17 -0.10 -2.38 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.11 2.76 6.00 -51.93 -0.31 2.45 16 34 H 0.07 1.69 7.26 -51.93 -0.38 1.31 16 35 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 36 H 0.12 2.21 7.20 -52.49 -0.38 1.84 16 37 H 0.38 4.07 9.07 45.56 0.41 4.48 16 38 H 0.37 3.97 9.08 45.56 0.41 4.38 16 39 H 0.38 5.47 9.08 45.56 0.41 5.89 16 40 H 0.13 2.78 4.82 -51.93 -0.25 2.53 16 41 H 0.09 1.78 6.34 -51.93 -0.33 1.45 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -31.83 333.60 -5.30 -37.13 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -3.17 Total: 20.31 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -0.22 Total: 7.79 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.35 Total: -31.56 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -2.34 Total: -52.08 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -4.95 Total: 13.40 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.83 -5.30 -37.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597755168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.538 kcal (2) G-P(sol) polarization free energy of solvation -31.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds