Wall clock time and date at job start Tue Mar 31 2020 03:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.46953 * 2 1 4 4 N 1.32178 * 120.53315 * 264.00120 * 3 2 1 5 5 C 1.31845 * 120.96080 * 180.02562 * 4 3 2 6 6 N 1.31872 * 122.07310 * 359.70970 * 5 4 3 7 7 C 1.32148 * 120.95502 * 0.58486 * 6 5 4 8 8 C 1.39841 * 120.53378 * 84.02122 * 3 2 1 9 9 C 1.48107 * 120.92580 * 0.02562 * 8 3 2 10 10 O 1.21857 * 120.00561 * 354.20724 * 9 8 3 11 11 N 1.33714 * 119.99911 * 174.21471 * 9 8 3 12 12 C 1.33048 * 120.00088 * 179.97438 * 11 9 8 13 13 C 1.41099 * 126.37550 * 0.02562 * 12 11 9 14 14 C 1.35061 * 108.24214 * 180.02562 * 13 12 11 15 15 N 1.36380 * 108.93181 * 0.02562 * 14 13 12 16 16 C 1.46504 * 125.85808 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.47123 * 85.02128 * 16 15 14 18 18 H 1.07998 * 120.00278 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99776 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00192 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00273 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46757 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47277 * 119.99738 * 21 19 17 24 24 H 1.48496 * 109.47450 * 240.00326 * 21 19 17 25 25 N 1.37403 * 126.37079 * 179.71423 * 12 11 9 26 26 H 0.96998 * 126.35769 * 359.95892 * 25 12 11 27 27 H 1.09005 * 109.46995 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47505 * 299.99995 * 1 2 3 29 29 H 1.09001 * 109.47755 * 60.00254 * 1 2 3 30 30 H 1.08995 * 109.47085 * 240.00133 * 2 1 3 31 31 H 1.08992 * 109.47231 * 120.00044 * 2 1 3 32 32 H 1.08000 * 118.96242 * 179.97438 * 5 4 3 33 33 H 1.08004 * 120.53427 * 179.70945 * 7 6 5 34 34 H 1.07998 * 125.87967 * 359.97438 * 13 12 11 35 35 H 1.08000 * 125.53467 * 180.02562 * 14 13 12 36 36 H 1.09004 * 109.47052 * 205.02745 * 16 15 14 37 37 H 1.09005 * 109.46278 * 325.02424 * 16 15 14 38 38 H 0.96999 * 120.00120 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.3682 2.0143 -1.1323 5 6 2.8091 3.2568 -1.1420 6 7 2.9309 3.9653 -0.0364 7 6 2.6229 3.4479 1.1399 8 6 2.1507 2.1325 1.1979 9 6 1.7876 1.5103 2.4920 10 8 1.2804 0.4025 2.5145 11 7 2.0163 2.1642 3.6357 12 6 1.6896 1.6056 4.7982 13 6 1.0993 0.3370 4.9805 14 6 0.9261 0.1377 6.3050 15 7 1.3825 1.2310 6.9804 16 6 1.3729 1.4070 8.4348 17 6 2.6041 0.7702 9.0260 18 1 3.3222 0.2834 8.3828 19 6 2.8138 0.8090 10.3882 20 7 1.9391 1.4013 11.1716 21 14 4.3403 0.0203 11.1211 22 1 5.1599 -0.5750 10.0350 23 1 5.1370 1.0514 11.8332 24 1 3.9381 -1.0422 12.0774 25 7 1.8698 2.1541 6.0450 26 1 2.2594 3.0205 6.2412 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.0749 3.7100 -2.0856 33 1 2.7296 4.0328 2.0415 34 1 0.8314 -0.3550 4.1958 35 1 0.4960 -0.7444 6.7560 36 1 1.3645 2.4709 8.6720 37 1 0.4835 0.9346 8.8520 38 1 2.0865 1.4282 12.1300 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609789777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:04 Heat of formation + Delta-G solvation = 95.606168 kcal Electronic energy + Delta-G solvation = -23233.008832 eV Core-core repulsion = 19691.836412 eV Total energy + Delta-G solvation = -3541.172420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.40295 -42.05374 -39.75046 -36.28270 -35.74636 -34.56268 -33.86007 -32.58910 -32.48755 -31.61759 -28.53633 -26.51876 -25.86779 -24.86599 -23.34293 -22.74476 -22.68155 -20.96612 -18.99260 -18.78209 -18.24074 -17.80293 -17.17069 -16.70480 -16.58448 -16.42242 -16.03485 -15.68527 -15.00788 -14.95459 -14.79132 -14.62000 -14.43561 -14.20275 -14.16008 -13.67139 -13.42875 -13.09787 -12.77375 -12.57296 -12.47201 -12.33562 -12.12799 -11.85828 -11.54948 -11.19969 -10.86384 -10.77618 -10.56508 -10.49956 -10.25505 -9.81572 -8.60659 -8.27598 -6.56719 -0.54900 0.02377 0.34021 0.57393 1.36990 1.43084 1.51704 1.60368 2.30077 2.58482 2.68694 2.94387 3.02568 3.14536 3.21246 3.36394 3.50113 3.90495 3.94830 4.26344 4.36491 4.38873 4.48308 4.49652 4.67404 4.82755 4.85775 4.90313 5.01913 5.10113 5.25696 5.26626 5.34348 5.43783 5.51189 5.69634 5.87430 6.00820 6.10884 6.40167 6.59864 6.76856 7.02627 7.17458 7.76439 8.65618 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.026804 B = 0.002895 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.376355 B = 9669.550437 C =10074.487135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C 0.214 3.786 4 N -0.538 5.538 5 C 0.304 3.696 6 N -0.545 5.545 7 C 0.200 3.800 8 C -0.223 4.223 9 C 0.533 3.467 10 O -0.576 6.576 11 N -0.703 5.703 12 C 0.457 3.543 13 C -0.339 4.339 14 C 0.177 3.823 15 N -0.343 5.343 16 C 0.266 3.734 17 C -0.565 4.565 18 H 0.060 0.940 19 C 0.031 3.969 20 N -0.913 5.913 21 Si 0.962 3.038 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.274 1.274 25 N -0.460 5.460 26 H 0.453 0.547 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.234 0.766 33 H 0.185 0.815 34 H 0.182 0.818 35 H 0.225 0.775 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 -0.263 -13.953 14.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.114 4.114 3 C 0.068 3.932 4 N -0.253 5.253 5 C 0.017 3.983 6 N -0.260 5.260 7 C 0.034 3.966 8 C -0.230 4.230 9 C 0.319 3.681 10 O -0.459 6.459 11 N -0.468 5.468 12 C 0.208 3.792 13 C -0.370 4.370 14 C 0.032 3.968 15 N -0.128 5.128 16 C 0.149 3.851 17 C -0.603 4.603 18 H 0.079 0.921 19 C -0.172 4.172 20 N -0.551 5.551 21 Si 0.788 3.212 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.199 1.199 25 N -0.183 5.183 26 H 0.302 0.698 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.250 0.750 33 H 0.202 0.798 34 H 0.199 0.801 35 H 0.241 0.759 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.584 0.578 -14.341 14.440 hybrid contribution 0.574 -0.547 1.657 1.837 sum -1.009 0.031 -12.684 12.724 Atomic orbital electron populations 1.21459 0.92856 1.02901 1.00714 1.20748 0.97690 0.88640 1.04292 1.22235 0.86892 0.97222 0.86889 1.68418 1.14696 1.12882 1.29273 1.25866 0.88030 0.86185 0.98171 1.68562 1.19005 1.38899 0.99497 1.23757 0.85149 0.91175 0.96503 1.21462 1.07862 0.98202 0.95509 1.18616 0.78316 0.84023 0.87137 1.90545 1.44183 1.22222 1.88959 1.68693 1.43171 1.39664 0.95272 1.19270 0.86186 0.88855 0.84926 1.22450 1.17382 1.00483 0.96732 1.23460 0.91340 0.89918 0.92082 1.47966 1.50813 1.10270 1.03733 1.19786 0.98955 0.99302 0.67087 1.21628 1.07509 1.38395 0.92755 0.92142 1.25573 0.99383 0.95121 0.97079 1.69959 1.36536 1.42880 1.05682 0.85426 0.79096 0.78347 0.78357 1.19691 1.20583 1.19942 1.44607 1.57498 1.16413 0.99766 0.69822 0.90363 0.93923 0.93067 0.89432 0.88516 0.75025 0.79776 0.80080 0.75887 0.93752 0.90848 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 9.51 71.98 0.68 -2.30 16 2 C -0.08 -2.01 5.49 29.85 0.16 -1.85 16 3 C 0.21 6.29 6.12 42.90 0.26 6.56 16 4 N -0.54 -14.40 10.36 -187.13 -1.94 -16.34 16 5 C 0.30 7.07 12.27 180.85 2.22 9.29 16 6 N -0.55 -14.52 10.42 -199.05 -2.07 -16.60 16 7 C 0.20 5.79 10.87 85.04 0.92 6.71 16 8 C -0.22 -7.09 5.91 -19.87 -0.12 -7.21 16 9 C 0.53 18.97 7.64 87.03 0.67 19.63 16 10 O -0.58 -20.98 8.97 -4.85 -0.04 -21.02 16 11 N -0.70 -25.05 9.79 -311.20 -3.05 -28.09 16 12 C 0.46 15.83 8.07 133.89 1.08 16.91 16 13 C -0.34 -10.98 9.52 22.24 0.21 -10.76 16 14 C 0.18 5.12 11.45 83.25 0.95 6.07 16 15 N -0.34 -11.33 3.63 -350.81 -1.27 -12.61 16 16 C 0.27 10.20 6.19 85.63 0.53 10.73 16 17 C -0.56 -25.21 9.39 25.60 0.24 -24.97 16 18 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 19 C 0.03 1.43 5.46 84.65 0.46 1.89 16 20 N -0.91 -44.47 13.29 21.45 0.28 -44.19 16 21 Si 0.96 37.75 29.54 68.60 2.03 39.78 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 23 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 25 N -0.46 -14.74 7.38 -54.80 -0.40 -15.15 16 26 H 0.45 12.79 8.96 -213.28 -1.91 10.88 16 27 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.04 1.24 6.91 -2.39 -0.02 1.22 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.10 2.90 5.92 -2.39 -0.01 2.88 16 32 H 0.23 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.19 5.02 7.66 -2.91 -0.02 5.00 16 34 H 0.18 6.07 5.77 -2.91 -0.02 6.05 16 35 H 0.22 4.65 8.06 -2.91 -0.02 4.62 16 36 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 38 H 0.27 12.70 8.31 -92.71 -0.77 11.93 16 Total: -1.00 -56.71 330.76 1.01 -55.70 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -0.80 Total: 27.82 kcal Atomic # 6 Polarization: 22.42 SS G_CDS: 8.28 Total: 30.70 kcal Atomic # 7 Polarization: -124.52 SS G_CDS: -8.45 Total: -132.98 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.04 Total: -21.02 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -56.71 1.01 -55.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609789777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.303 kcal (2) G-P(sol) polarization free energy of solvation -56.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds