Wall clock time and date at job start Tue Mar 31 2020 04:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47206 * 2 1 4 4 O 1.42902 * 109.46818 * 240.00453 * 2 1 3 5 5 C 1.42903 * 114.00089 * 90.00437 * 4 2 1 6 6 C 1.52994 * 109.47240 * 179.97438 * 5 4 2 7 7 H 1.09000 * 110.27451 * 304.35972 * 6 5 4 8 8 C 1.54947 * 110.39537 * 182.21220 * 6 5 4 9 9 C 1.55457 * 100.98961 * 204.64739 * 8 6 5 10 10 C 1.54382 * 102.18540 * 34.03935 * 9 8 6 11 11 O 1.43233 * 107.66464 * 338.74226 * 10 9 8 12 12 C 1.50694 * 109.47321 * 120.00318 * 2 1 3 13 13 O 1.20825 * 119.99887 * 119.99713 * 12 2 1 14 14 O 1.34233 * 119.99982 * 300.00386 * 12 2 1 15 15 C 1.45195 * 116.99667 * 179.97438 * 14 12 2 16 16 C 1.50711 * 109.46832 * 179.97438 * 15 14 12 17 17 O 1.21290 * 119.99703 * 359.97438 * 16 15 14 18 18 N 1.34770 * 120.00086 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00222 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99528 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00010 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00358 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99885 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47219 * 59.99741 * 23 21 19 25 25 H 1.48496 * 109.47357 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47264 * 300.00394 * 23 21 19 27 27 H 1.09003 * 109.47021 * 59.99825 * 1 2 3 28 28 H 1.08999 * 109.47034 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47075 * 299.99895 * 1 2 3 30 30 H 1.09001 * 109.47292 * 59.99247 * 5 4 2 31 31 H 1.09009 * 109.46875 * 299.99565 * 5 4 2 32 32 H 1.08999 * 111.12360 * 322.51237 * 8 6 5 33 33 H 1.08993 * 111.12429 * 86.67654 * 8 6 5 34 34 H 1.08994 * 110.83103 * 275.89000 * 9 8 6 35 35 H 1.08999 * 110.92148 * 152.22878 * 9 8 6 36 36 H 1.09002 * 109.83024 * 219.18066 * 10 9 8 37 37 H 1.08996 * 109.83002 * 98.29659 * 10 9 8 38 38 H 1.08994 * 109.47292 * 299.99369 * 15 14 12 39 39 H 1.08996 * 109.47645 * 60.00143 * 15 14 12 40 40 H 0.97003 * 120.00353 * 0.02562 * 18 16 15 41 41 H 0.97004 * 120.00208 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2001 0.1831 -2.2941 6 6 2.7090 -0.6403 -3.4789 7 1 3.6152 -1.1794 -3.2027 8 6 2.9796 0.2774 -4.6977 9 6 2.8346 -0.7348 -5.8687 10 6 1.7346 -1.6832 -5.3454 11 8 1.6965 -1.5594 -3.9189 12 6 2.0324 -0.7104 1.2304 13 8 2.7270 -1.6928 1.1194 14 8 1.7081 -0.2519 2.4496 15 6 2.2268 -0.9866 3.5895 16 6 1.7629 -0.3294 4.8639 17 8 1.0642 0.6609 4.8160 18 7 2.1251 -0.8415 6.0567 19 6 1.7035 -0.2433 7.2161 20 1 1.0807 0.6380 7.1735 21 6 2.0766 -0.7716 8.4459 22 7 2.8340 -1.8443 8.4978 23 14 1.5016 0.0429 10.0255 24 1 0.0172 0.0430 10.0705 25 1 2.0326 -0.7080 11.1914 26 1 1.9981 1.4417 10.0704 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.9320 0.9515 -2.0450 31 1 1.2537 0.6549 -2.5589 32 1 2.2320 1.0674 -4.7682 33 1 3.9861 0.6937 -4.6602 34 1 3.7672 -1.2749 -6.0318 35 1 2.5118 -0.2318 -6.7802 36 1 1.9706 -2.7110 -5.6213 37 1 0.7704 -1.3994 -5.7670 38 1 1.8626 -2.0133 3.5563 39 1 3.3163 -0.9862 3.5568 40 1 2.6848 -1.6328 6.0951 41 1 3.0948 -2.2129 9.3563 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731243994.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:34 Heat of formation + Delta-G solvation = -237.407839 kcal Electronic energy + Delta-G solvation = -23990.235993 eV Core-core repulsion = 20062.728579 eV Total energy + Delta-G solvation = -3927.507413 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.81856 -40.53169 -40.08516 -38.88556 -37.42957 -36.03957 -33.48485 -33.34948 -32.96706 -31.17990 -29.97343 -26.87872 -26.52993 -25.28205 -22.61543 -22.30765 -21.95903 -21.44133 -20.08600 -18.98171 -18.45677 -18.06833 -17.78922 -17.42114 -17.16364 -16.79369 -16.47923 -16.20428 -15.90781 -15.67047 -15.47488 -14.90461 -14.57431 -14.23636 -14.03725 -13.81045 -13.55955 -13.44818 -13.32000 -13.10936 -12.92933 -12.65025 -12.56836 -12.48922 -12.18795 -12.12741 -12.11268 -11.91157 -11.68701 -11.57379 -11.50191 -10.79183 -10.52082 -10.47628 -10.12785 -8.52422 -6.03494 0.97955 1.08803 1.37743 1.43588 1.55131 1.85976 2.27162 2.59996 2.87162 3.02607 3.12808 3.53544 3.56692 3.79233 3.86507 3.92007 3.98279 4.03229 4.12489 4.14874 4.19782 4.24307 4.37511 4.47883 4.57908 4.68407 4.74033 4.82966 4.90301 4.98248 5.01789 5.15079 5.22846 5.25090 5.36493 5.87511 5.92257 6.14409 6.44390 6.59721 7.01803 7.38620 7.91566 8.64302 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.052665 B = 0.002129 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.531080 B =13149.260367 C =13353.094425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 H 0.132 0.868 4 O -0.381 6.381 5 C 0.054 3.946 6 C 0.074 3.926 7 H 0.065 0.935 8 C -0.140 4.140 9 C -0.149 4.149 10 C 0.037 3.963 11 O -0.404 6.404 12 C 0.456 3.544 13 O -0.523 6.523 14 O -0.335 6.335 15 C 0.070 3.930 16 C 0.438 3.562 17 O -0.615 6.615 18 N -0.557 5.557 19 C -0.339 4.339 20 H 0.086 0.914 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 1.000 3.000 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.269 1.269 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.400 0.600 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.741 4.157 -27.251 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.149 0.851 4 O -0.301 6.301 5 C -0.022 4.022 6 C 0.017 3.983 7 H 0.083 0.917 8 C -0.178 4.178 9 C -0.187 4.187 10 C -0.040 4.040 11 O -0.325 6.325 12 C 0.299 3.701 13 O -0.411 6.411 14 O -0.250 6.250 15 C -0.007 4.007 16 C 0.225 3.775 17 O -0.502 6.502 18 N -0.195 5.195 19 C -0.468 4.468 20 H 0.104 0.896 21 C -0.211 4.211 22 N -0.556 5.556 23 Si 0.823 3.177 24 H -0.195 1.195 25 H -0.195 1.195 26 H -0.194 1.194 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.234 0.766 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.471 4.078 -27.000 27.311 hybrid contribution 0.364 -0.396 0.924 1.069 sum 0.835 3.682 -26.077 26.348 Atomic orbital electron populations 1.22200 0.91091 1.03652 1.05130 1.21510 0.96517 0.96324 0.80932 0.85058 1.88044 1.86889 1.35799 1.19337 1.23116 1.02117 0.92649 0.84274 1.23134 0.90912 0.90379 0.93882 0.91691 1.23281 1.04814 0.98020 0.91671 1.23152 0.99265 0.96778 0.99471 1.23341 1.00142 1.00196 0.80284 1.88513 1.56226 1.65333 1.22405 1.24316 0.77261 0.83154 0.85347 1.90651 1.36350 1.26735 1.87395 1.86520 1.69308 1.54933 1.14255 1.22546 1.00565 0.95678 0.81925 1.20006 0.85595 0.86964 0.84962 1.90519 1.43036 1.29195 1.87433 1.41743 1.45888 1.27773 1.04080 1.19707 1.31420 1.11967 0.83669 0.89576 1.26166 0.96090 0.96546 1.02297 1.69674 1.35514 1.21901 1.28462 0.84884 0.78654 0.78172 0.76004 1.19454 1.19460 1.19389 0.88135 0.92468 0.89896 0.89173 0.90476 0.88719 0.87745 0.90001 0.87723 0.91560 0.90454 0.87855 0.87574 0.76600 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.46 71.98 0.68 -2.82 16 2 C 0.11 2.60 3.24 29.85 0.10 2.70 16 3 H 0.13 2.35 7.79 -2.39 -0.02 2.33 16 4 O -0.38 -10.04 9.51 -126.79 -1.21 -11.25 16 5 C 0.05 0.92 5.46 71.98 0.39 1.31 16 6 C 0.07 1.28 3.72 31.26 0.12 1.40 16 7 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 8 C -0.14 -1.25 6.58 32.11 0.21 -1.03 16 9 C -0.15 -1.24 7.03 31.91 0.22 -1.02 16 10 C 0.04 0.51 7.79 72.45 0.56 1.08 16 11 O -0.40 -9.02 11.03 -147.43 -1.63 -10.65 16 12 C 0.46 15.34 7.33 71.23 0.52 15.86 16 13 O -0.52 -20.48 16.25 28.40 0.46 -20.01 16 14 O -0.33 -12.62 9.66 -45.09 -0.44 -13.06 16 15 C 0.07 2.73 5.94 71.24 0.42 3.16 16 16 C 0.44 21.62 7.86 87.66 0.69 22.31 16 17 O -0.62 -34.89 16.08 15.74 0.25 -34.64 16 18 N -0.56 -28.89 5.29 -306.98 -1.62 -30.51 16 19 C -0.34 -19.06 9.68 84.04 0.81 -18.25 16 20 H 0.09 5.10 7.16 -2.91 -0.02 5.08 16 21 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 22 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 23 Si 1.00 42.07 29.55 68.60 2.03 44.10 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 27 H 0.10 1.56 7.87 -2.39 -0.02 1.54 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.86 8.11 -2.39 -0.02 1.84 16 30 H 0.09 1.07 8.08 -2.39 -0.02 1.05 16 31 H 0.08 1.05 7.87 -2.38 -0.02 1.03 16 32 H 0.09 0.62 8.06 -2.39 -0.02 0.61 16 33 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.10 0.45 8.14 -2.39 -0.02 0.44 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 38 H 0.10 3.70 8.13 -2.39 -0.02 3.68 16 39 H 0.11 3.73 8.13 -2.39 -0.02 3.71 16 40 H 0.40 19.61 7.90 -92.71 -0.73 18.87 16 41 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -75.61 355.75 3.64 -71.96 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.31 Total: 28.14 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: 5.20 Total: 24.60 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -1.34 Total: -79.19 kcal Atomic # 8 Polarization: -87.05 SS G_CDS: -2.55 Total: -89.61 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -75.61 3.64 -71.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243994.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.446 kcal (2) G-P(sol) polarization free energy of solvation -75.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds