Wall clock time and date at job start Tue Mar 31 2020 03:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47090 * 2 1 4 4 O 1.42895 * 109.47438 * 239.99682 * 2 1 3 5 5 C 1.42903 * 113.99762 * 89.99527 * 4 2 1 6 6 C 1.53002 * 109.46935 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.82556 * 305.56747 * 6 5 4 8 8 C 1.54386 * 109.82974 * 184.58924 * 6 5 4 9 9 C 1.55310 * 102.25021 * 219.13046 * 8 6 5 10 10 C 1.54945 * 100.94226 * 34.13434 * 9 8 6 11 11 O 1.43239 * 109.83080 * 66.45796 * 6 5 4 12 12 C 1.50702 * 109.47359 * 119.99732 * 2 1 3 13 13 O 1.21288 * 120.00254 * 103.23980 * 12 2 1 14 14 N 1.34778 * 119.99748 * 283.24045 * 12 2 1 15 15 C 1.37096 * 119.99727 * 185.75693 * 14 12 2 16 16 H 1.08004 * 120.00344 * 3.84389 * 15 14 12 17 17 C 1.38956 * 120.00078 * 183.84175 * 15 14 12 18 18 N 1.31415 * 119.99626 * 20.16649 * 17 15 14 19 19 Si 1.86802 * 120.00015 * 200.16807 * 17 15 14 20 20 H 1.48495 * 109.47321 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.46834 * 120.00043 * 19 17 15 22 22 H 1.48497 * 109.47030 * 239.99878 * 19 17 15 23 23 C 1.46504 * 120.00159 * 5.75337 * 14 12 2 24 24 C 1.50704 * 109.46983 * 94.51664 * 23 14 12 25 25 O 1.20831 * 119.99675 * 359.97438 * 24 23 14 26 26 O 1.34221 * 119.99957 * 180.02562 * 24 23 14 27 27 H 1.08994 * 109.46881 * 187.78024 * 1 2 3 28 28 H 1.09006 * 109.46907 * 307.77108 * 1 2 3 29 29 H 1.08995 * 109.47209 * 67.77317 * 1 2 3 30 30 H 1.08996 * 109.47531 * 300.00605 * 5 4 2 31 31 H 1.08999 * 109.47107 * 60.00372 * 5 4 2 32 32 H 1.08997 * 110.84824 * 337.31857 * 8 6 5 33 33 H 1.08998 * 110.84681 * 100.94453 * 8 6 5 34 34 H 1.09002 * 111.12061 * 276.21151 * 9 8 6 35 35 H 1.08997 * 111.12101 * 152.05275 * 9 8 6 36 36 H 1.09004 * 110.30568 * 204.63943 * 10 9 8 37 37 H 1.08997 * 110.39586 * 82.51228 * 10 9 8 38 38 H 0.97000 * 119.99756 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.46891 * 214.51389 * 23 14 12 40 40 H 1.08993 * 109.47103 * 334.51369 * 23 14 12 41 41 H 0.96699 * 117.00244 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2000 0.1829 -2.2940 6 6 2.7079 -0.6409 -3.4791 7 1 3.6014 -1.1938 -3.1891 8 6 3.0296 0.2924 -4.6662 9 6 2.5270 -0.5345 -5.8810 10 6 1.3043 -1.2559 -5.2602 11 8 1.6903 -1.5527 -3.9088 12 6 2.0324 -0.7103 1.2305 13 8 2.4614 -1.8416 1.1451 14 7 2.0050 -0.0885 2.4259 15 6 2.5690 -0.6869 3.5229 16 1 3.0894 -1.6274 3.4173 17 6 2.4710 -0.0835 4.7708 18 7 1.5388 0.8153 4.9946 19 14 3.6646 -0.5498 6.1300 20 1 4.6109 -1.5776 5.6268 21 1 4.4219 0.6538 6.5581 22 1 2.9094 -1.0965 7.2858 23 6 1.3726 1.2269 2.5531 24 6 -0.0560 1.0562 3.0016 25 8 -0.5004 -0.0507 3.1946 26 8 -0.8349 2.1337 3.1855 27 1 -0.3633 -1.0182 0.1391 28 1 -0.3633 0.6295 0.8124 29 1 -0.3633 0.3887 -0.9512 30 1 1.2538 0.6546 -2.5588 31 1 2.9319 0.9513 -2.0450 32 1 2.4810 1.2304 -4.5818 33 1 4.1020 0.4738 -4.7374 34 1 3.2812 -1.2503 -6.2080 35 1 2.2243 0.1166 -6.7011 36 1 1.0920 -2.1764 -5.8039 37 1 0.4323 -0.6019 -5.2696 38 1 1.4701 1.2362 5.8658 39 1 1.9155 1.8215 3.2878 40 1 1.3926 1.7344 1.5887 41 1 -1.7440 1.9742 3.4739 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736697801.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:49 Heat of formation + Delta-G solvation = -195.631136 kcal Electronic energy + Delta-G solvation = -25889.148495 eV Core-core repulsion = 21963.452655 eV Total energy + Delta-G solvation = -3925.695839 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.78898 -39.46858 -38.38778 -36.89757 -35.17369 -34.42611 -32.37137 -32.14056 -31.14936 -29.78390 -27.66646 -25.66204 -25.18925 -22.96507 -21.85740 -21.20148 -21.07082 -19.13235 -17.26921 -17.11087 -17.01760 -16.59595 -16.22013 -15.64294 -15.44832 -15.15787 -14.88482 -14.48404 -14.35619 -13.96669 -13.64096 -13.61747 -13.12163 -12.72909 -12.27889 -12.12676 -11.95727 -11.81216 -11.77488 -11.64341 -11.42284 -11.33057 -11.19862 -11.07612 -10.92605 -10.77118 -10.41487 -10.31559 -10.27412 -9.59997 -9.49279 -9.39471 -9.01822 -8.34192 -8.01775 -6.45854 -3.86373 3.12047 3.24424 3.31656 3.44866 3.55615 3.66964 3.83491 4.15645 4.26945 4.28387 4.61173 4.69126 4.90408 5.02008 5.05250 5.13701 5.22739 5.28398 5.40574 5.43779 5.46118 5.50717 5.57071 5.64722 5.65394 5.77865 5.88332 5.97998 6.06563 6.12340 6.49015 6.59776 6.71192 7.01319 7.44841 7.52167 7.56692 7.95642 8.37167 9.07418 9.08901 9.29220 9.81814 10.61327 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.003866 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.558879 B = 7240.875228 C = 7976.867508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.077 3.923 3 H 0.070 0.930 4 O -0.345 6.345 5 C 0.048 3.952 6 C 0.084 3.916 7 H 0.091 0.909 8 C -0.148 4.148 9 C -0.156 4.156 10 C 0.045 3.955 11 O -0.364 6.364 12 C 0.460 3.540 13 O -0.553 6.553 14 N -0.434 5.434 15 C -0.290 4.290 16 H 0.111 0.889 17 C 0.025 3.975 18 N -0.893 5.893 19 Si 0.934 3.066 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.283 1.283 23 C 0.141 3.859 24 C 0.496 3.504 25 O -0.508 6.508 26 O -0.535 6.535 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.271 0.729 39 H 0.139 0.861 40 H 0.071 0.929 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 7.502 -15.842 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.015 3.985 3 H 0.087 0.913 4 O -0.262 6.262 5 C -0.029 4.029 6 C 0.026 3.974 7 H 0.108 0.892 8 C -0.186 4.186 9 C -0.193 4.193 10 C -0.031 4.031 11 O -0.283 6.283 12 C 0.248 3.752 13 O -0.434 6.434 14 N -0.156 5.156 15 C -0.416 4.416 16 H 0.129 0.871 17 C -0.175 4.175 18 N -0.536 5.536 19 Si 0.761 3.239 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.209 1.209 23 C 0.014 3.986 24 C 0.336 3.664 25 O -0.393 6.393 26 O -0.346 6.346 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.156 0.844 40 H 0.089 0.911 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.035 6.390 -15.673 16.926 hybrid contribution -0.394 0.388 1.015 1.156 sum -0.360 6.778 -14.658 16.154 Atomic orbital electron populations 1.22201 0.94551 1.03815 1.01498 1.21921 0.94582 0.95488 0.86487 0.91268 1.88121 1.86441 1.33264 1.18407 1.22987 0.99607 0.93029 0.87305 1.22767 0.91761 0.90449 0.92412 0.89151 1.23118 1.02792 0.99044 0.93655 1.23267 0.98480 0.99512 0.98063 1.23402 0.96398 0.99935 0.83412 1.88610 1.56873 1.54619 1.28164 1.19695 0.84455 0.87105 0.83963 1.90553 1.49537 1.17839 1.85458 1.43518 1.48899 1.15630 1.07553 1.19875 1.28954 1.07655 0.85165 0.87094 1.25179 0.97031 0.96965 0.98309 1.69663 1.30056 1.29675 1.24190 0.85729 0.79983 0.78432 0.79793 1.19132 1.20528 1.20907 1.21027 0.88294 0.88157 1.01101 1.23640 0.88002 0.81634 0.73086 1.90624 1.74024 1.27001 1.47686 1.84521 1.27631 1.40759 1.81710 0.91094 0.91877 0.92212 0.93172 0.92465 0.90232 0.89571 0.90242 0.89949 0.89840 0.92413 0.91798 0.84382 0.91130 0.75347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.29 37.16 0.35 -2.67 16 2 C 0.08 1.54 2.30 -27.88 -0.06 1.47 16 3 H 0.07 1.16 6.35 -51.93 -0.33 0.83 16 4 O -0.34 -6.93 9.56 -58.43 -0.56 -7.49 16 5 C 0.05 0.69 5.28 37.16 0.20 0.89 16 6 C 0.08 1.09 3.81 -26.00 -0.10 0.99 16 7 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 8 C -0.15 -1.28 6.54 -24.78 -0.16 -1.44 16 9 C -0.16 -1.20 7.16 -24.48 -0.18 -1.38 16 10 C 0.05 0.46 7.78 38.18 0.30 0.75 16 11 O -0.36 -5.45 11.00 -37.79 -0.42 -5.86 16 12 C 0.46 11.79 6.91 -10.98 -0.08 11.71 16 13 O -0.55 -16.45 16.18 -13.78 -0.22 -16.68 16 14 N -0.43 -11.15 2.15 -116.09 -0.25 -11.40 16 15 C -0.29 -8.09 9.38 -14.93 -0.14 -8.23 16 16 H 0.11 3.29 7.27 -52.48 -0.38 2.90 16 17 C 0.03 0.66 5.11 -17.46 -0.09 0.57 16 18 N -0.89 -23.06 8.51 55.50 0.47 -22.59 16 19 Si 0.93 20.73 29.60 -169.99 -5.03 15.70 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.14 3.08 4.82 -5.19 -0.03 3.06 16 24 C 0.50 11.10 4.09 36.01 0.15 11.25 16 25 O -0.51 -13.40 16.75 -18.75 -0.31 -13.71 16 26 O -0.54 -9.70 13.42 -39.23 -0.53 -10.23 16 27 H 0.07 1.48 8.13 -51.93 -0.42 1.06 16 28 H 0.06 1.16 4.62 -51.93 -0.24 0.92 16 29 H 0.06 0.91 7.75 -51.93 -0.40 0.50 16 30 H 0.05 0.65 7.75 -51.93 -0.40 0.25 16 31 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.08 0.60 7.85 -51.93 -0.41 0.19 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.14 3.14 6.12 -51.93 -0.32 2.82 16 40 H 0.07 1.26 5.59 -51.93 -0.29 0.97 16 41 H 0.39 5.49 9.10 45.56 0.41 5.90 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -36.18 336.73 -6.49 -42.67 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -4.87 Total: 7.54 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: 0.15 Total: 16.98 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.22 Total: -33.99 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -2.04 Total: -53.97 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.18 -6.49 -42.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736697801.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.964 kcal (2) G-P(sol) polarization free energy of solvation -36.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds