Wall clock time and date at job start Tue Mar 31 2020 04:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37092 * 119.99844 * 2 1 4 4 H 1.08005 * 119.99577 * 202.40512 * 3 2 1 5 5 C 1.38950 * 120.00463 * 22.40696 * 3 2 1 6 6 N 1.31412 * 119.99565 * 11.60188 * 5 3 2 7 7 Si 1.86797 * 120.00374 * 191.60739 * 5 3 2 8 8 H 1.48499 * 109.46939 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47269 * 119.99405 * 7 5 3 10 10 H 1.48496 * 109.47293 * 239.99929 * 7 5 3 11 11 C 1.34782 * 119.99742 * 180.02562 * 2 1 3 12 12 O 1.21287 * 119.99795 * 179.97438 * 11 2 1 13 13 C 1.50697 * 119.99839 * 359.97438 * 11 2 1 14 14 C 1.53001 * 109.46795 * 180.02562 * 13 11 2 15 15 C 1.50698 * 109.47173 * 180.02562 * 14 13 11 16 16 C 1.38311 * 119.88459 * 89.99651 * 15 14 13 17 17 C 1.38031 * 120.12002 * 180.02562 * 16 15 14 18 18 C 1.39296 * 119.88049 * 359.97438 * 17 16 15 19 19 C 1.48465 * 120.11754 * 179.97438 * 18 17 16 20 20 N 1.34046 * 126.67509 * 0.02709 * 19 18 17 21 21 N 1.28982 * 107.27101 * 179.97438 * 20 19 18 22 22 N 1.28731 * 108.94338 * 359.97438 * 21 20 19 23 23 H 0.97001 * 125.34737 * 180.02562 * 22 21 20 24 24 N 1.28874 * 109.31770 * 0.02562 * 22 21 20 25 25 C 1.39302 * 119.76490 * 0.24761 * 18 17 16 26 26 C 1.38028 * 119.88181 * 359.49928 * 25 18 17 27 27 H 1.09003 * 109.46856 * 272.15374 * 1 2 3 28 28 H 1.09001 * 109.47462 * 32.15319 * 1 2 3 29 29 H 1.08999 * 109.47329 * 152.15432 * 1 2 3 30 30 H 0.97002 * 120.00028 * 179.97438 * 6 5 3 31 31 H 1.08992 * 109.47704 * 59.99885 * 13 11 2 32 32 H 1.09002 * 109.46914 * 299.99443 * 13 11 2 33 33 H 1.08996 * 109.47888 * 59.99171 * 14 13 11 34 34 H 1.09007 * 109.47051 * 299.99333 * 14 13 11 35 35 H 1.08002 * 119.94078 * 0.02562 * 16 15 14 36 36 H 1.07997 * 120.06056 * 180.02562 * 17 16 15 37 37 H 1.08000 * 120.05804 * 179.74939 * 25 18 17 38 38 H 1.08003 * 119.94357 * 180.23040 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1693 1.2225 -0.3565 5 6 1.5344 2.3452 0.4587 6 7 0.3897 2.2707 1.0997 7 14 2.3334 4.0078 0.1641 8 1 3.6079 3.8205 -0.5746 9 1 1.4185 4.8620 -0.6351 10 1 2.6092 4.6625 1.4681 11 6 2.1389 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4723 -0.0005 14 6 2.3795 -3.6352 -0.0005 15 6 1.6260 -4.9403 -0.0012 16 6 1.2818 -5.5367 -1.2006 17 6 0.5912 -6.7318 -1.2069 18 6 0.2413 -7.3375 -0.0023 19 6 -0.5020 -8.6227 -0.0028 20 7 -0.9025 -9.3154 -1.0783 21 7 -1.5113 -10.3689 -0.6502 22 7 -1.5057 -10.3608 0.6371 23 1 -1.8989 -11.0423 1.2043 24 7 -0.8957 -9.3049 1.0541 25 6 0.5865 -6.7302 1.2030 26 6 1.2816 -5.5378 1.1979 27 1 -0.3633 0.0386 1.0270 28 1 -0.3634 0.8700 -0.5469 29 1 -0.3634 -0.9086 -0.4800 30 1 -0.0403 3.0790 1.4202 31 1 0.7583 -2.5299 -0.8902 32 1 0.7590 -2.5302 0.8898 33 1 3.0063 -3.5776 0.8893 34 1 3.0061 -3.5776 -0.8906 35 1 1.5538 -5.0665 -2.1341 36 1 0.3232 -7.1969 -2.1440 37 1 0.3141 -7.1936 2.1397 38 1 1.5530 -5.0680 2.1317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736781099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:00 Heat of formation + Delta-G solvation = 113.399792 kcal Electronic energy + Delta-G solvation = -22652.945941 eV Core-core repulsion = 19112.545111 eV Total energy + Delta-G solvation = -3540.400831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.68581 -39.52600 -38.35853 -35.06095 -34.61929 -34.16240 -32.69779 -31.56244 -31.05479 -29.46548 -26.43919 -25.46450 -24.93598 -24.10314 -22.72441 -22.48354 -20.84280 -19.44688 -18.65307 -17.37663 -16.99244 -16.82564 -16.09880 -15.50324 -15.09131 -14.55858 -14.47908 -14.15519 -14.07575 -13.50052 -13.45595 -13.24463 -12.80115 -12.55842 -12.42084 -11.77069 -11.61804 -11.56905 -11.53219 -11.36586 -11.21128 -11.06731 -10.99530 -10.94453 -10.79211 -10.51074 -10.30081 -10.18181 -9.01873 -9.01307 -8.62760 -8.29031 -7.65512 -6.28807 -3.85262 0.55942 0.97824 1.34854 1.98269 2.19720 3.16343 3.26591 3.33593 3.48329 3.73326 3.93557 3.98175 4.16181 4.74568 4.85934 4.92253 5.04113 5.14867 5.17686 5.22836 5.39450 5.43091 5.62366 5.66557 5.76606 5.97020 5.98339 6.08633 6.11358 6.29078 6.33494 6.35088 6.44992 6.56487 6.72942 6.86953 6.91502 7.25588 7.58965 7.90160 8.16252 8.51398 9.21912 9.46539 10.02042 10.74886 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.039730 B = 0.002348 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.592972 B =11921.270034 C =12140.530798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.449 5.449 3 C -0.304 4.304 4 H 0.099 0.901 5 C 0.028 3.972 6 N -0.884 5.884 7 Si 0.926 3.074 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.282 1.282 11 C 0.445 3.555 12 O -0.593 6.593 13 C -0.122 4.122 14 C -0.068 4.068 15 C -0.045 4.045 16 C -0.121 4.121 17 C -0.072 4.072 18 C -0.038 4.038 19 C 0.228 3.772 20 N -0.271 5.271 21 N -0.052 5.052 22 N -0.230 5.230 23 H 0.474 0.526 24 N -0.298 5.298 25 C -0.076 4.076 26 C -0.121 4.121 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.266 0.734 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 -21.317 -0.106 22.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.168 5.168 3 C -0.432 4.432 4 H 0.116 0.884 5 C -0.175 4.175 6 N -0.524 5.524 7 Si 0.753 3.247 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.208 1.208 11 C 0.233 3.767 12 O -0.478 6.478 13 C -0.163 4.163 14 C -0.105 4.105 15 C -0.046 4.046 16 C -0.139 4.139 17 C -0.092 4.092 18 C -0.042 4.042 19 C -0.051 4.051 20 N -0.144 5.144 21 N -0.048 5.048 22 N -0.076 5.076 23 H 0.328 0.672 24 N -0.149 5.149 25 C -0.096 4.096 26 C -0.139 4.139 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.768 -21.683 -0.314 22.439 hybrid contribution -0.110 0.776 0.617 0.997 sum -5.878 -20.907 0.303 21.719 Atomic orbital electron populations 1.21501 0.81158 0.98790 1.01680 1.43626 1.05543 1.04881 1.62731 1.19707 0.99438 0.83902 1.40168 0.88368 1.25344 0.96540 1.00070 0.95506 1.70010 1.17436 1.29091 1.35899 0.85868 0.79252 0.81501 0.78121 1.19247 1.20715 1.20790 1.20069 0.88050 0.84901 0.83654 1.90507 1.14039 1.87247 1.56024 1.21497 0.98503 0.93273 1.02987 1.20416 0.96711 0.88752 1.04651 1.20357 0.95314 0.96044 0.92921 1.21071 0.99199 0.95229 0.98356 1.21132 0.96227 0.94850 0.97015 1.17187 1.02038 0.89985 0.94970 1.23793 0.99623 0.97610 0.84073 1.76086 1.12133 1.00472 1.25672 1.78897 1.15353 1.16493 0.94007 1.47721 1.36647 1.17377 1.05850 0.67151 1.74946 1.14517 0.98596 1.26873 1.21112 0.96599 0.95053 0.96820 1.21069 0.99154 0.95249 0.98405 0.92453 0.91389 0.95441 0.92383 0.90415 0.90256 0.90061 0.90098 0.84992 0.84869 0.85205 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.50 8.52 59.85 0.51 3.01 16 2 N -0.45 -11.48 3.02 -122.19 -0.37 -11.85 16 3 C -0.30 -8.50 9.29 -14.94 -0.14 -8.64 16 4 H 0.10 2.88 7.41 -52.48 -0.39 2.49 16 5 C 0.03 0.74 5.11 -17.47 -0.09 0.65 16 6 N -0.88 -23.63 10.62 55.50 0.59 -23.04 16 7 Si 0.93 20.82 29.57 -169.99 -5.03 15.80 16 8 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 C 0.45 10.59 7.63 -10.98 -0.08 10.50 16 12 O -0.59 -16.06 15.67 5.55 0.09 -15.97 16 13 C -0.12 -2.12 4.20 -27.88 -0.12 -2.24 16 14 C -0.07 -1.03 4.63 -27.88 -0.13 -1.16 16 15 C -0.05 -0.58 5.14 -104.57 -0.54 -1.11 16 16 C -0.12 -1.40 9.68 -39.63 -0.38 -1.78 16 17 C -0.07 -0.81 9.70 -39.26 -0.38 -1.19 16 18 C -0.04 -0.45 5.88 -104.89 -0.62 -1.06 16 19 C 0.23 2.65 7.94 -156.30 -1.24 1.41 16 20 N -0.27 -3.25 12.23 32.16 0.39 -2.86 16 21 N -0.05 -0.52 13.47 60.35 0.81 0.29 16 22 N -0.23 -1.66 7.90 60.35 0.48 -1.18 16 23 H 0.47 1.03 8.96 -340.37 -3.05 -2.02 16 24 N -0.30 -2.95 12.08 32.17 0.39 -2.56 16 25 C -0.08 -0.83 9.70 -39.26 -0.38 -1.21 16 26 C -0.12 -1.41 9.68 -39.63 -0.38 -1.79 16 27 H 0.06 1.32 7.54 -51.93 -0.39 0.93 16 28 H 0.07 1.59 7.06 -51.93 -0.37 1.23 16 29 H 0.03 0.50 6.36 -51.93 -0.33 0.17 16 30 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.08 1.23 7.40 -51.93 -0.38 0.84 16 32 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 33 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 34 H 0.08 1.27 8.04 -51.93 -0.42 0.85 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.13 1.35 7.89 -52.49 -0.41 0.94 16 37 H 0.13 1.25 7.88 -52.49 -0.41 0.83 16 38 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -33.41 332.10 -8.59 -42.00 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.98 Total: -1.03 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -3.97 Total: -4.60 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 2.29 Total: -41.20 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.09 Total: -15.97 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.41 -8.59 -42.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736781099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.399 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds