Wall clock time and date at job start Tue Mar 31 2020 03:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47223 * 2 1 4 4 C 1.53005 * 109.46963 * 240.00484 * 2 1 3 5 5 O 1.45195 * 109.47582 * 120.00437 * 2 1 3 6 6 C 1.34629 * 116.99982 * 59.99732 * 5 2 1 7 7 O 1.21508 * 120.00254 * 0.02562 * 6 5 2 8 8 N 1.34784 * 119.99645 * 180.02562 * 6 5 2 9 9 C 1.47164 * 120.94464 * 359.97438 * 8 6 5 10 10 C 1.53300 * 108.37481 * 230.47489 * 9 8 6 11 11 O 1.42961 * 109.26618 * 307.77372 * 10 9 8 12 12 C 1.42967 * 114.16831 * 62.55217 * 11 10 9 13 13 H 1.09006 * 109.50903 * 57.39540 * 12 11 10 14 14 C 1.50694 * 109.51508 * 177.49590 * 12 11 10 15 15 O 1.21210 * 119.99992 * 5.00409 * 14 12 11 16 16 O 1.34311 * 119.99949 * 185.00082 * 14 12 11 17 17 C 1.34924 * 116.99970 * 179.97438 * 16 14 12 18 18 H 1.08000 * 119.99661 * 0.02562 * 17 16 14 19 19 C 1.38753 * 120.00113 * 180.02562 * 17 16 14 20 20 N 1.31440 * 119.99834 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99991 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47008 * 59.99997 * 21 19 17 23 23 H 1.48503 * 109.47074 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46904 * 299.99957 * 21 19 17 25 25 C 1.47157 * 120.97899 * 180.02562 * 8 6 5 26 26 H 1.09005 * 109.46848 * 299.99719 * 1 2 3 27 27 H 1.08997 * 109.47249 * 59.99708 * 1 2 3 28 28 H 1.09003 * 109.46823 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47365 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46682 * 300.00759 * 3 2 1 31 31 H 1.08998 * 109.46819 * 59.99966 * 3 2 1 32 32 H 1.08997 * 109.46848 * 299.99135 * 4 2 1 33 33 H 1.08997 * 109.47294 * 59.99836 * 4 2 1 34 34 H 1.08999 * 109.46898 * 179.97438 * 4 2 1 35 35 H 1.08996 * 109.64217 * 110.78153 * 9 8 6 36 36 H 1.08999 * 109.72598 * 350.21805 * 9 8 6 37 37 H 1.09002 * 109.51290 * 187.82368 * 10 9 8 38 38 H 1.08997 * 109.51158 * 67.72466 * 10 9 8 39 39 H 0.97007 * 119.99812 * 179.97438 * 20 19 17 40 40 H 1.09004 * 109.67827 * 9.75528 * 25 8 6 41 41 H 1.09000 * 109.68235 * 249.19910 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 8 2.0141 -0.6845 1.1854 6 6 1.6524 -1.9723 1.3381 7 8 0.9517 -2.5097 0.5034 8 7 2.0675 -2.6654 2.4170 9 6 2.9170 -2.0354 3.4403 10 6 4.1242 -2.9457 3.6935 11 8 3.6655 -4.2701 3.9753 12 6 2.9529 -4.8841 2.8987 13 1 3.5844 -4.9075 2.0105 14 6 2.5735 -6.2908 3.2837 15 8 2.8018 -6.6952 4.4033 16 8 1.9824 -7.0964 2.3862 17 6 1.6694 -8.3435 2.7951 18 1 1.8951 -8.6533 3.8048 19 6 1.0574 -9.2280 1.9185 20 7 0.7832 -8.8511 0.6895 21 14 0.6233 -10.9543 2.4849 22 1 -0.3172 -10.8772 3.6315 23 1 -0.0163 -11.6955 1.3683 24 1 1.8590 -11.6628 2.9050 25 6 1.6855 -4.0740 2.6053 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6766 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2496 35 1 2.3496 -1.9131 4.3629 36 1 3.2585 -1.0625 3.0869 37 1 4.6926 -2.5686 4.5438 38 1 4.7604 -2.9613 2.8085 39 1 0.3557 -9.4696 0.0765 40 1 1.2113 -4.4501 1.6987 41 1 0.9942 -4.1580 3.4438 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767454595.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:15 Heat of formation + Delta-G solvation = -191.251460 kcal Electronic energy + Delta-G solvation = -25733.357292 eV Core-core repulsion = 21807.851370 eV Total energy + Delta-G solvation = -3925.505922 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96387 -39.63100 -38.45130 -36.99298 -35.25500 -34.76628 -33.88025 -32.23734 -31.54800 -28.18307 -27.58091 -27.49260 -25.75455 -24.53791 -23.19714 -21.40734 -20.15398 -19.36766 -18.10672 -17.76833 -16.81320 -16.78773 -16.26744 -16.06467 -15.44828 -15.37856 -14.87797 -14.63884 -14.40033 -14.31075 -13.96785 -13.70216 -13.64282 -13.28725 -12.72387 -12.41983 -12.33217 -12.20614 -12.04016 -11.83690 -11.63256 -11.56852 -11.52002 -11.39435 -11.14742 -10.76824 -10.47600 -10.46292 -10.42420 -10.14199 -9.96943 -9.83890 -9.03769 -8.62389 -8.58662 -6.41992 -4.10926 1.99270 2.82813 3.11459 3.14059 3.22097 3.38966 3.43719 3.68344 4.10903 4.55916 4.59984 4.65735 4.69775 4.75017 4.90850 5.06119 5.09953 5.15522 5.27386 5.32984 5.36176 5.37237 5.52313 5.57209 5.59399 5.66842 5.72562 5.78780 5.81517 6.01776 6.16172 6.19138 6.29170 6.39984 6.53393 7.20967 7.30346 7.37786 7.92002 8.31822 8.66058 9.05586 9.78945 10.75092 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.019646 B = 0.003810 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.895984 B = 7347.025488 C = 8458.304188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.185 4.185 5 O -0.364 6.364 6 C 0.654 3.346 7 O -0.557 6.557 8 N -0.599 5.599 9 C 0.076 3.924 10 C 0.047 3.953 11 O -0.351 6.351 12 C 0.101 3.899 13 H 0.090 0.910 14 C 0.404 3.596 15 O -0.531 6.531 16 O -0.206 6.206 17 C -0.384 4.384 18 H 0.097 0.903 19 C 0.044 3.956 20 N -0.860 5.860 21 Si 0.946 3.054 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.269 1.269 25 C 0.109 3.891 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.057 0.943 39 H 0.271 0.729 40 H 0.123 0.877 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 20.156 -1.473 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.242 4.242 5 O -0.279 6.279 6 C 0.409 3.591 7 O -0.445 6.445 8 N -0.340 5.340 9 C -0.047 4.047 10 C -0.031 4.031 11 O -0.269 6.269 12 C 0.041 3.959 13 H 0.107 0.893 14 C 0.248 3.752 15 O -0.426 6.426 16 O -0.114 6.114 17 C -0.460 4.460 18 H 0.115 0.885 19 C -0.160 4.160 20 N -0.497 5.497 21 Si 0.770 3.230 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.194 1.194 25 C -0.012 4.012 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.141 0.859 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.829 19.759 -1.543 20.020 hybrid contribution -0.209 -0.565 -0.026 0.603 sum 2.619 19.194 -1.569 19.436 Atomic orbital electron populations 1.22522 0.93982 1.05318 1.02311 1.22070 0.94435 0.91401 0.82251 1.21847 1.02158 0.92595 1.03009 1.22530 1.01524 1.03824 0.96329 1.86254 1.71646 1.23643 1.46407 1.17890 0.78965 0.80518 0.81735 1.90943 1.40822 1.70121 1.42650 1.47000 1.53385 1.12163 1.21475 1.22477 0.92600 0.97482 0.92144 1.23039 0.94784 0.82802 1.02432 1.88090 1.73260 1.27839 1.37742 1.21558 0.93800 0.89887 0.90689 0.89262 1.22216 0.81001 0.87102 0.84913 1.90588 1.54083 1.75721 1.22206 1.83858 1.63656 1.24078 1.39774 1.21204 1.40255 0.84823 0.99747 0.88514 1.25350 0.95950 0.99850 0.94893 1.69994 1.38717 1.36365 1.04600 0.85714 0.79120 0.79934 0.78225 1.19394 1.20339 1.19428 1.22262 0.96369 0.77107 1.05463 0.92258 0.91193 0.89171 0.91528 0.90208 0.91560 0.89091 0.91190 0.92198 0.90152 0.88108 0.87069 0.92441 0.91887 0.85937 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.37 37.16 0.31 -1.68 16 2 C 0.14 1.46 1.13 -90.61 -0.10 1.35 16 3 C -0.14 -1.04 8.85 37.16 0.33 -0.71 16 4 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 5 O -0.36 -4.68 8.58 -40.30 -0.35 -5.03 16 6 C 0.65 10.16 7.75 54.06 0.42 10.58 16 7 O -0.56 -10.13 11.35 -19.28 -0.22 -10.35 16 8 N -0.60 -8.97 3.02 -178.08 -0.54 -9.51 16 9 C 0.08 0.87 6.65 -3.52 -0.02 0.84 16 10 C 0.05 0.57 6.98 37.31 0.26 0.83 16 11 O -0.35 -6.29 9.92 -55.07 -0.55 -6.83 16 12 C 0.10 1.96 3.30 -27.76 -0.09 1.87 16 13 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 14 C 0.40 10.20 7.23 36.00 0.26 10.46 16 15 O -0.53 -14.81 15.75 -25.76 -0.41 -15.21 16 16 O -0.21 -5.90 9.74 -20.71 -0.20 -6.10 16 17 C -0.38 -11.37 9.65 30.92 0.30 -11.07 16 18 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 19 C 0.04 1.25 5.49 -17.53 -0.10 1.15 16 20 N -0.86 -25.20 13.67 55.48 0.76 -24.44 16 21 Si 0.95 21.31 29.55 -169.99 -5.02 16.29 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 C 0.11 1.95 5.91 -3.55 -0.02 1.93 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.25 5.88 -51.93 -0.31 0.94 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 0.94 7.01 -51.93 -0.36 0.58 16 37 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.12 2.42 7.08 -51.93 -0.37 2.05 16 41 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 LS Contribution 341.31 15.07 5.14 5.14 Total: -1.00 -34.95 341.31 -5.43 -40.39 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.91 Total: 1.83 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 1.85 Total: 13.82 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.22 Total: -33.95 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -1.72 Total: -43.52 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.95 -5.43 -40.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767454595.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.864 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds