Wall clock time and date at job start Tue Mar 31 2020 04:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81401 * 102.99798 * 2 1 4 4 H 1.09002 * 110.67068 * 54.30180 * 3 2 1 5 5 C 1.54887 * 110.75761 * 291.06427 * 3 2 1 6 6 C 1.54757 * 103.96441 * 203.66840 * 5 3 2 7 7 C 1.53872 * 106.65180 * 23.57130 * 6 5 3 8 8 H 1.08995 * 110.03240 * 240.72419 * 7 6 5 9 9 N 1.46499 * 110.07541 * 119.31444 * 7 6 5 10 10 C 1.34775 * 120.00068 * 87.80797 * 9 7 6 11 11 O 1.21588 * 119.99789 * 0.02562 * 10 9 7 12 12 N 1.34776 * 120.00193 * 180.02562 * 10 9 7 13 13 C 1.46504 * 120.00237 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47209 * 179.97438 * 13 12 10 15 15 O 1.21285 * 119.99910 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99732 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00000 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99701 * 0.02562 * 17 16 14 19 19 C 1.38954 * 120.00340 * 180.02562 * 17 16 14 20 20 N 1.31407 * 119.99952 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99538 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47052 * 90.00418 * 21 19 17 23 23 H 1.48502 * 109.46910 * 209.99670 * 21 19 17 24 24 H 1.48493 * 109.47537 * 330.00202 * 21 19 17 25 25 C 1.54265 * 106.59766 * 0.02562 * 7 6 5 26 26 H 1.08992 * 109.47486 * 59.99859 * 1 2 3 27 27 H 1.09004 * 109.47248 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47079 * 299.99792 * 1 2 3 29 29 H 1.08998 * 110.49004 * 322.23741 * 5 3 2 30 30 H 1.09001 * 110.48617 * 84.88250 * 5 3 2 31 31 H 1.08996 * 110.00094 * 264.27075 * 6 5 3 32 32 H 1.08997 * 110.01260 * 142.87310 * 6 5 3 33 33 H 0.97005 * 120.00166 * 267.81222 * 9 7 6 34 34 H 0.96998 * 119.99977 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.46637 * 300.00030 * 13 12 10 36 36 H 1.08995 * 109.47125 * 59.99286 * 13 12 10 37 37 H 0.97006 * 120.00032 * 0.02562 * 16 14 13 38 38 H 0.97000 * 119.99518 * 179.97438 * 20 19 17 39 39 H 1.09005 * 110.48489 * 217.71127 * 25 7 6 40 40 H 1.08999 * 110.49056 * 95.07011 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7287 2.2763 0.8282 5 6 1.8383 2.4195 -1.3515 6 6 2.7540 3.6640 -1.4392 7 6 3.9704 3.3805 -0.5406 8 1 4.0283 4.1236 0.2548 9 7 5.1998 3.4017 -1.3370 10 6 5.8553 4.5627 -1.5339 11 8 5.4266 5.5925 -1.0501 12 7 6.9861 4.5823 -2.2671 13 6 7.6989 5.8442 -2.4806 14 6 8.9210 5.5940 -3.3262 15 8 9.1720 4.4719 -3.7121 16 7 9.7349 6.6171 -3.6536 17 6 10.8469 6.3895 -4.4224 18 1 11.0704 5.3902 -4.7661 19 6 11.6864 7.4442 -4.7596 20 7 12.7519 7.2260 -5.4969 21 14 11.3000 9.1722 -4.1646 22 1 11.9514 9.4002 -2.8496 23 1 11.8114 10.1603 -5.1482 24 1 9.8303 9.3300 -4.0228 25 6 3.7556 1.9767 0.0619 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.0423 1.7365 -2.1762 30 1 0.7886 2.7131 -1.3490 31 1 2.2215 4.5446 -1.0800 32 1 3.0779 3.8170 -2.4686 33 1 5.5420 2.5801 -1.7228 34 1 7.3283 3.7607 -2.6527 35 1 7.0429 6.5504 -2.9894 36 1 8.0016 6.2578 -1.5186 37 1 9.5342 7.5145 -3.3446 38 1 13.3377 7.9624 -5.7326 39 1 4.1030 1.9476 1.0947 40 1 4.2684 1.2227 -0.5353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805159384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:48 Heat of formation + Delta-G solvation = -96.332919 kcal Electronic energy + Delta-G solvation = -21590.457796 eV Core-core repulsion = 18144.113473 eV Total energy + Delta-G solvation = -3446.344324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.35106 -40.28161 -38.87209 -36.26879 -35.26665 -34.64427 -33.81806 -30.17377 -29.79554 -29.51251 -28.01707 -26.04716 -22.42045 -22.01496 -21.46192 -21.14320 -20.55577 -19.48197 -18.01702 -17.43588 -17.09978 -17.02690 -16.68742 -16.57730 -15.81029 -15.62506 -15.57464 -14.93401 -14.88123 -14.46291 -14.33629 -14.21730 -14.03156 -13.96977 -13.75917 -13.14475 -12.97266 -12.78365 -12.63836 -12.44066 -12.16365 -11.99710 -11.95901 -11.63108 -11.57442 -11.36204 -10.77579 -10.64611 -10.39744 -10.31039 -9.81586 -8.65801 -8.45029 -6.06957 0.74092 1.31813 1.34777 1.44423 1.61669 1.66819 1.79774 2.12942 2.21124 2.80001 3.11316 3.27252 3.44596 3.63130 3.88206 4.00978 4.27668 4.33788 4.36367 4.38238 4.41370 4.41994 4.46235 4.46348 4.53653 4.81421 4.92029 5.02493 5.05095 5.17594 5.25647 5.31037 5.49407 5.61904 5.88881 5.96598 6.49519 6.78831 7.02853 7.29326 7.54500 7.79098 8.71382 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.045475 B = 0.002217 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.575901 B =12628.382193 C =12976.321788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.300 6.300 3 C -0.049 4.049 4 H 0.105 0.895 5 C -0.107 4.107 6 C -0.131 4.131 7 C 0.164 3.836 8 H 0.083 0.917 9 N -0.728 5.728 10 C 0.706 3.294 11 O -0.628 6.628 12 N -0.728 5.728 13 C 0.139 3.861 14 C 0.446 3.554 15 O -0.615 6.615 16 N -0.578 5.578 17 C -0.331 4.331 18 H 0.063 0.937 19 C -0.009 4.009 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.232 1.232 25 C -0.099 4.099 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.408 0.592 34 H 0.409 0.591 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.392 0.608 38 H 0.281 0.719 39 H 0.089 0.911 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.206 -8.028 12.998 30.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.072 6.072 3 C -0.178 4.178 4 H 0.124 0.876 5 C -0.147 4.147 6 C -0.171 4.171 7 C 0.058 3.942 8 H 0.101 0.899 9 N -0.384 5.384 10 C 0.406 3.594 11 O -0.509 6.509 12 N -0.386 5.386 13 C 0.010 3.990 14 C 0.233 3.767 15 O -0.501 6.501 16 N -0.218 5.218 17 C -0.460 4.460 18 H 0.081 0.919 19 C -0.209 4.209 20 N -0.566 5.566 21 Si 0.779 3.221 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.155 1.155 25 C -0.139 4.139 26 H 0.104 0.896 27 H 0.126 0.874 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.245 0.755 34 H 0.247 0.753 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.228 0.772 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.569 -8.683 13.090 30.008 hybrid contribution 0.049 1.175 -0.507 1.281 sum -25.520 -7.508 12.582 29.427 Atomic orbital electron populations 1.23420 0.91567 1.07247 1.05852 1.87082 1.10451 1.11645 1.97979 1.24076 0.99218 0.92809 1.01703 0.87637 1.22750 1.00039 0.96223 0.95642 1.22656 0.95788 0.98533 1.00146 1.21471 0.82328 0.97659 0.92737 0.89919 1.45176 1.27534 1.08569 1.57081 1.15921 0.79893 0.84515 0.79048 1.90877 1.70098 1.33238 1.56706 1.44737 1.25929 1.11702 1.56195 1.20681 0.91051 0.87001 1.00237 1.20528 0.86317 0.84979 0.84871 1.90523 1.75885 1.24246 1.59409 1.41919 1.22978 1.09531 1.47371 1.19027 1.01216 0.96862 1.28904 0.91874 1.26077 0.94738 1.03872 0.96209 1.69782 1.14718 1.34958 1.37108 0.85439 0.80791 0.76623 0.79231 1.18084 1.19859 1.15550 1.22400 0.93501 0.95240 1.02710 0.89609 0.87437 0.89542 0.90478 0.89921 0.90894 0.91898 0.75541 0.75321 0.88109 0.88020 0.77211 0.90939 0.89258 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.70 113.37 1.21 0.32 16 2 S -0.30 -4.17 21.81 -56.49 -1.23 -5.40 16 3 C -0.05 -0.58 3.39 31.89 0.11 -0.47 16 4 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 5 C -0.11 -1.25 6.26 31.84 0.20 -1.06 16 6 C -0.13 -2.08 6.61 31.49 0.21 -1.88 16 7 C 0.16 2.87 3.24 45.71 0.15 3.02 16 8 H 0.08 1.71 7.56 -2.39 -0.02 1.69 16 9 N -0.73 -15.11 4.99 -454.36 -2.27 -17.37 16 10 C 0.71 20.36 8.56 179.06 1.53 21.89 16 11 O -0.63 -21.89 16.00 -3.99 -0.06 -21.95 16 12 N -0.73 -22.09 5.53 -482.30 -2.67 -24.75 16 13 C 0.14 4.54 6.15 85.63 0.53 5.07 16 14 C 0.45 19.34 7.85 87.66 0.69 20.03 16 15 O -0.61 -31.55 15.24 -3.05 -0.05 -31.60 16 16 N -0.58 -26.50 5.09 -306.99 -1.56 -28.07 16 17 C -0.33 -18.78 10.16 84.04 0.85 -17.93 16 18 H 0.06 4.23 7.39 -2.91 -0.02 4.21 16 19 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 20 N -0.93 -54.40 13.96 21.66 0.30 -54.10 16 21 Si 0.96 38.05 27.74 68.60 1.90 39.95 16 22 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 24 H -0.23 -7.85 6.52 99.48 0.65 -7.20 16 25 C -0.10 -1.33 5.98 31.67 0.19 -1.14 16 26 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.08 1.00 8.05 -2.39 -0.02 0.98 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.19 7.92 -2.39 -0.02 1.17 16 33 H 0.41 6.84 8.37 -92.70 -0.78 6.07 16 34 H 0.41 12.40 7.45 -92.71 -0.69 11.71 16 35 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.39 15.08 5.76 -92.70 -0.53 14.55 16 38 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.08 1.16 7.64 -2.39 -0.02 1.14 16 Total: -1.00 -73.62 347.23 -0.48 -74.10 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -0.98 Total: 41.35 kcal Atomic # 6 Polarization: 21.71 SS G_CDS: 6.14 Total: 27.85 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -6.20 Total: -124.29 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.11 Total: -53.55 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.90 Total: 39.95 kcal Atomic # 16 Polarization: -4.17 SS G_CDS: -1.23 Total: -5.40 kcal Total: -73.62 -0.48 -74.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805159384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.237 kcal (2) G-P(sol) polarization free energy of solvation -73.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds