Wall clock time and date at job start Tue Mar 31 2020 04:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.62784 * 2 1 4 4 O 1.43362 * 109.63187 * 120.39736 * 2 1 3 5 5 C 1.44192 * 107.29075 * 119.21140 * 4 2 1 6 6 C 1.54916 * 103.23232 * 338.47438 * 5 4 2 7 7 H 1.08995 * 110.97853 * 277.54723 * 6 5 4 8 8 C 1.52997 * 110.98266 * 153.75373 * 6 5 4 9 9 N 1.46494 * 109.47343 * 180.02562 * 8 6 5 10 10 C 1.34778 * 119.99919 * 180.02562 * 9 8 6 11 11 O 1.21587 * 120.00004 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99797 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99416 * 179.97438 * 12 10 9 14 14 C 1.50705 * 109.46799 * 179.97438 * 13 12 10 15 15 O 1.21298 * 119.99740 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00026 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99922 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00006 * 0.02562 * 17 16 14 19 19 C 1.38946 * 119.99813 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00230 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99774 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47427 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47217 * 120.00611 * 21 19 17 24 24 H 1.48502 * 109.47254 * 240.00377 * 21 19 17 25 25 O 1.43751 * 109.63126 * 239.76134 * 2 1 3 26 26 H 1.09003 * 109.47148 * 301.05923 * 1 2 3 27 27 H 1.09003 * 109.47408 * 61.05504 * 1 2 3 28 28 H 1.09008 * 109.47223 * 181.05875 * 1 2 3 29 29 H 1.08996 * 109.47318 * 178.93946 * 3 2 1 30 30 H 1.08999 * 109.47387 * 298.94553 * 3 2 1 31 31 H 1.09004 * 109.47094 * 58.94126 * 3 2 1 32 32 H 1.09002 * 110.69702 * 96.95880 * 5 4 2 33 33 H 1.08997 * 110.69747 * 219.99465 * 5 4 2 34 34 H 1.08998 * 109.47263 * 300.00583 * 8 6 5 35 35 H 1.09007 * 109.46386 * 59.99933 * 8 6 5 36 36 H 0.96999 * 120.00059 * 0.02562 * 9 8 6 37 37 H 0.96999 * 120.00181 * 0.02562 * 12 10 9 38 38 H 1.08996 * 109.47740 * 299.99426 * 13 12 10 39 39 H 1.08998 * 109.47155 * 60.00565 * 13 12 10 40 40 H 0.96993 * 120.00196 * 0.02562 * 16 14 13 41 41 H 0.97006 * 120.00110 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0117 -0.6832 1.1647 5 6 2.7885 -1.8097 0.7101 6 6 2.2663 -2.0428 -0.7297 7 1 1.3468 -2.6280 -0.7213 8 6 3.3327 -2.7142 -1.5973 9 7 2.8055 -2.9180 -2.9488 10 6 3.5743 -3.4981 -3.8916 11 8 4.7055 -3.8519 -3.6206 12 7 3.0893 -3.6852 -5.1352 13 6 3.9252 -4.3153 -6.1601 14 6 3.1534 -4.4068 -7.4513 15 8 2.0170 -3.9865 -7.5096 16 7 3.7261 -4.9546 -8.5414 17 6 3.0237 -5.0383 -9.7158 18 1 2.0116 -4.6649 -9.7676 19 6 3.6144 -5.6026 -10.8398 20 7 4.8459 -6.0565 -10.7770 21 14 2.6576 -5.7160 -12.4402 22 1 1.3031 -5.1380 -12.2492 23 1 3.3731 -4.9600 -13.4993 24 1 2.5362 -7.1398 -12.8445 25 8 2.0130 -0.6819 -1.1697 26 1 -0.3633 0.5302 0.8804 27 1 -0.3634 0.4974 -0.8993 28 1 -0.3634 -1.0276 0.0190 29 1 3.1337 1.4382 0.0190 30 1 1.6975 1.9504 -0.8993 31 1 1.6666 1.9614 0.8804 32 1 3.8509 -1.5661 0.6998 33 1 2.6012 -2.6837 1.3339 34 1 4.2163 -2.0778 -1.6445 35 1 3.6013 -3.6771 -1.1625 36 1 1.9031 -2.6354 -3.1651 37 1 2.1873 -3.4019 -5.3517 38 1 4.8232 -3.7172 -6.3149 39 1 4.2071 -5.3164 -5.8341 40 1 4.6349 -5.2903 -8.4948 41 1 5.2581 -6.4509 -11.5616 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807551663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:39 Heat of formation + Delta-G solvation = -159.274623 kcal Electronic energy + Delta-G solvation = -24090.248135 eV Core-core repulsion = 20198.421583 eV Total energy + Delta-G solvation = -3891.826552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.152 amu Computer time = 3.85 seconds Orbital eigenvalues (eV) -41.05291 -39.77580 -38.20590 -35.82047 -34.90151 -34.38225 -33.64930 -33.05805 -31.37260 -30.02742 -27.84938 -27.62556 -25.66134 -24.28235 -22.24804 -21.57371 -20.69635 -19.58400 -18.45579 -17.98320 -17.92073 -16.80703 -16.32090 -15.70948 -15.64034 -15.34315 -15.09994 -14.66067 -14.49985 -14.19882 -14.15089 -13.95236 -13.55316 -13.47595 -13.07889 -12.93276 -12.63803 -12.56926 -12.44492 -12.17620 -12.08879 -11.86591 -11.69260 -11.62722 -11.13931 -10.59684 -10.40607 -10.32469 -10.08108 -10.05609 -9.64170 -9.22065 -8.61927 -8.61814 -8.09398 -6.50915 -3.92859 2.69559 2.90562 3.10601 3.22821 3.29597 3.37749 3.49824 3.75858 4.00045 4.12074 4.28214 4.38078 4.51301 4.54762 4.57730 4.82554 4.90876 5.08227 5.10974 5.17915 5.18712 5.26457 5.32145 5.43546 5.47494 5.62475 5.70526 5.79165 5.91859 6.01349 6.08905 6.40539 6.69725 6.74922 7.05918 7.46784 7.93326 8.21316 8.45887 8.76920 9.05416 9.40316 9.88174 10.66083 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.033742 B = 0.002227 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.632454 B =12568.817691 C =13095.330461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.249 3.751 3 C -0.154 4.154 4 O -0.378 6.378 5 C 0.031 3.969 6 C 0.034 3.966 7 H 0.094 0.906 8 C 0.152 3.848 9 N -0.746 5.746 10 C 0.706 3.294 11 O -0.599 6.599 12 N -0.723 5.723 13 C 0.128 3.872 14 C 0.429 3.571 15 O -0.598 6.598 16 N -0.550 5.550 17 C -0.304 4.304 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 O -0.363 6.363 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.400 0.600 37 H 0.407 0.593 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.396 0.604 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 9.270 22.279 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.172 3.828 3 C -0.212 4.212 4 O -0.300 6.300 5 C -0.046 4.046 6 C -0.024 4.024 7 H 0.111 0.889 8 C 0.027 3.973 9 N -0.403 5.403 10 C 0.406 3.594 11 O -0.478 6.478 12 N -0.380 5.380 13 C 0.000 4.000 14 C 0.215 3.785 15 O -0.484 6.484 16 N -0.185 5.185 17 C -0.433 4.433 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.535 5.535 21 Si 0.759 3.241 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.206 1.206 25 O -0.284 6.284 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.234 0.766 37 H 0.245 0.755 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.230 0.770 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.469 9.280 22.293 24.557 hybrid contribution -0.674 -0.183 -1.047 1.258 sum -5.143 9.097 21.246 23.677 Atomic orbital electron populations 1.22381 0.93646 1.03375 1.03461 1.23407 0.93038 0.91541 0.74785 1.22072 1.02571 0.93289 1.03254 1.88901 1.69561 1.41877 1.29621 1.24093 0.96945 0.89920 0.93640 1.24316 0.99307 0.85043 0.93753 0.88866 1.21070 0.95100 1.00211 0.80944 1.44866 1.18209 1.66711 1.10508 1.15800 0.84319 0.78793 0.80506 1.90907 1.18187 1.57666 1.81013 1.44755 1.19357 1.65179 1.08747 1.20790 0.93414 0.98834 0.86950 1.19771 0.88198 0.85267 0.85309 1.90494 1.19259 1.54058 1.84627 1.41795 1.16017 1.51756 1.08897 1.19775 0.99514 1.37629 0.86420 0.87644 1.25327 0.96051 0.96488 0.99922 1.69622 1.12754 1.39735 1.31373 0.85757 0.79595 0.77969 0.80755 1.19151 1.20621 1.20624 1.89423 1.85947 1.21246 1.31783 0.90746 0.90380 0.91797 0.91369 0.90522 0.90542 0.89986 0.87772 0.90447 0.89643 0.76573 0.75543 0.89980 0.89978 0.77008 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.20 37.16 0.34 -0.88 16 2 C 0.25 2.15 1.47 -26.73 -0.04 2.11 16 3 C -0.15 -1.16 9.24 37.16 0.34 -0.82 16 4 O -0.38 -3.44 10.87 -59.04 -0.64 -4.08 16 5 C 0.03 0.22 7.53 38.17 0.29 0.51 16 6 C 0.03 0.27 3.55 -25.72 -0.09 0.18 16 7 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 8 C 0.15 1.49 5.45 -4.05 -0.02 1.47 16 9 N -0.75 -8.99 5.56 -65.23 -0.36 -9.36 16 10 C 0.71 11.49 8.57 -86.91 -0.74 10.74 16 11 O -0.60 -11.62 16.34 5.29 0.09 -11.54 16 12 N -0.72 -12.26 5.53 -66.41 -0.37 -12.63 16 13 C 0.13 2.41 6.15 -5.19 -0.03 2.37 16 14 C 0.43 9.88 7.85 -10.98 -0.09 9.79 16 15 O -0.60 -15.33 15.24 5.54 0.08 -15.25 16 16 N -0.55 -13.68 5.29 -10.96 -0.06 -13.74 16 17 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 18 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 20 N -0.89 -23.94 13.05 55.50 0.72 -23.21 16 21 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 O -0.36 -3.60 10.75 -59.04 -0.63 -4.24 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.53 8.04 -51.93 -0.42 0.12 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 4.14 8.49 -40.82 -0.35 3.79 16 37 H 0.41 6.73 7.45 -40.82 -0.30 6.43 16 38 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.40 9.48 7.90 -40.82 -0.32 9.15 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 352.73 15.07 5.32 5.32 Total: -1.00 -32.98 352.73 -7.13 -40.12 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -5.97 Total: 15.46 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: -0.28 Total: 17.61 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.06 Total: -58.94 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -1.10 Total: -35.10 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.98 -7.13 -40.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807551663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.157 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.85 seconds