Wall clock time and date at job start Tue Mar 31 2020 04:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.62784 * 2 1 4 4 O 1.43362 * 109.63187 * 120.39736 * 2 1 3 5 5 C 1.44192 * 107.29075 * 119.21140 * 4 2 1 6 6 C 1.54916 * 103.23232 * 338.47438 * 5 4 2 7 7 H 1.08995 * 110.97853 * 277.54723 * 6 5 4 8 8 C 1.52997 * 110.98266 * 153.75373 * 6 5 4 9 9 N 1.46494 * 109.47343 * 180.02562 * 8 6 5 10 10 C 1.34778 * 119.99919 * 180.02562 * 9 8 6 11 11 O 1.21587 * 120.00004 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99797 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99416 * 179.97438 * 12 10 9 14 14 C 1.50705 * 109.46799 * 179.97438 * 13 12 10 15 15 O 1.21298 * 119.99740 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00026 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99922 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00006 * 0.02562 * 17 16 14 19 19 C 1.38946 * 119.99813 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00230 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99774 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47427 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47217 * 120.00611 * 21 19 17 24 24 H 1.48502 * 109.47254 * 240.00377 * 21 19 17 25 25 O 1.43751 * 109.63126 * 239.76134 * 2 1 3 26 26 H 1.09003 * 109.47148 * 301.05923 * 1 2 3 27 27 H 1.09003 * 109.47408 * 61.05504 * 1 2 3 28 28 H 1.09008 * 109.47223 * 181.05875 * 1 2 3 29 29 H 1.08996 * 109.47318 * 178.93946 * 3 2 1 30 30 H 1.08999 * 109.47387 * 298.94553 * 3 2 1 31 31 H 1.09004 * 109.47094 * 58.94126 * 3 2 1 32 32 H 1.09002 * 110.69702 * 96.95880 * 5 4 2 33 33 H 1.08997 * 110.69747 * 219.99465 * 5 4 2 34 34 H 1.08998 * 109.47263 * 300.00583 * 8 6 5 35 35 H 1.09007 * 109.46386 * 59.99933 * 8 6 5 36 36 H 0.96999 * 120.00059 * 0.02562 * 9 8 6 37 37 H 0.96999 * 120.00181 * 0.02562 * 12 10 9 38 38 H 1.08996 * 109.47740 * 299.99426 * 13 12 10 39 39 H 1.08998 * 109.47155 * 60.00565 * 13 12 10 40 40 H 0.96993 * 120.00196 * 0.02562 * 16 14 13 41 41 H 0.97006 * 120.00110 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0117 -0.6832 1.1647 5 6 2.7885 -1.8097 0.7101 6 6 2.2663 -2.0428 -0.7297 7 1 1.3468 -2.6280 -0.7213 8 6 3.3327 -2.7142 -1.5973 9 7 2.8055 -2.9180 -2.9488 10 6 3.5743 -3.4981 -3.8916 11 8 4.7055 -3.8519 -3.6206 12 7 3.0893 -3.6852 -5.1352 13 6 3.9252 -4.3153 -6.1601 14 6 3.1534 -4.4068 -7.4513 15 8 2.0170 -3.9865 -7.5096 16 7 3.7261 -4.9546 -8.5414 17 6 3.0237 -5.0383 -9.7158 18 1 2.0116 -4.6649 -9.7676 19 6 3.6144 -5.6026 -10.8398 20 7 4.8459 -6.0565 -10.7770 21 14 2.6576 -5.7160 -12.4402 22 1 1.3031 -5.1380 -12.2492 23 1 3.3731 -4.9600 -13.4993 24 1 2.5362 -7.1398 -12.8445 25 8 2.0130 -0.6819 -1.1697 26 1 -0.3633 0.5302 0.8804 27 1 -0.3634 0.4974 -0.8993 28 1 -0.3634 -1.0276 0.0190 29 1 3.1337 1.4382 0.0190 30 1 1.6975 1.9504 -0.8993 31 1 1.6666 1.9614 0.8804 32 1 3.8509 -1.5661 0.6998 33 1 2.6012 -2.6837 1.3339 34 1 4.2163 -2.0778 -1.6445 35 1 3.6013 -3.6771 -1.1625 36 1 1.9031 -2.6354 -3.1651 37 1 2.1873 -3.4019 -5.3517 38 1 4.8232 -3.7172 -6.3149 39 1 4.2071 -5.3164 -5.8341 40 1 4.6349 -5.2903 -8.4948 41 1 5.2581 -6.4509 -11.5616 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807551663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:37 Heat of formation + Delta-G solvation = -185.913655 kcal Electronic energy + Delta-G solvation = -24091.403290 eV Core-core repulsion = 20198.421583 eV Total energy + Delta-G solvation = -3892.981707 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73538 -41.09893 -40.00038 -36.70294 -36.21212 -35.66252 -35.26625 -33.81396 -33.35549 -30.87021 -29.09189 -28.38244 -26.83525 -25.84322 -22.96682 -22.26445 -21.90244 -21.36055 -20.11837 -19.59614 -18.58448 -17.74648 -17.41987 -17.17837 -16.90829 -16.49952 -16.27403 -15.96945 -15.90090 -15.58209 -15.25172 -15.12116 -14.77238 -14.38832 -13.95226 -13.90902 -13.60889 -13.55149 -13.53947 -13.21578 -13.12974 -13.03776 -12.90282 -12.67201 -12.44105 -12.32845 -12.10889 -11.57473 -11.47218 -11.19775 -10.67228 -10.55177 -10.46133 -10.09876 -9.85040 -8.50635 -6.00736 1.35590 1.42814 1.52797 1.59663 1.90205 2.09705 2.26782 2.29683 2.88368 3.01703 3.16676 3.24512 3.51945 3.70222 3.81729 3.95026 3.96030 4.21922 4.26396 4.41783 4.44157 4.47891 4.56823 4.64585 4.66712 4.76361 4.78217 4.85723 4.98166 5.15745 5.22521 5.30210 5.38447 5.40531 5.89002 5.93876 6.08565 6.48713 6.98827 7.04198 7.42701 7.50950 7.95230 8.66537 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.033742 B = 0.002227 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.632454 B =12568.817691 C =13095.330461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.240 3.760 3 C -0.155 4.155 4 O -0.391 6.391 5 C 0.030 3.970 6 C 0.039 3.961 7 H 0.109 0.891 8 C 0.150 3.850 9 N -0.731 5.731 10 C 0.706 3.294 11 O -0.630 6.630 12 N -0.724 5.724 13 C 0.142 3.858 14 C 0.434 3.566 15 O -0.624 6.624 16 N -0.560 5.560 17 C -0.336 4.336 18 H 0.086 0.914 19 C -0.012 4.012 20 N -0.916 5.916 21 Si 0.997 3.003 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.271 1.271 25 O -0.384 6.384 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.410 0.590 37 H 0.410 0.590 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.399 0.601 41 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 9.282 22.965 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.164 3.836 3 C -0.212 4.212 4 O -0.313 6.313 5 C -0.047 4.047 6 C -0.018 4.018 7 H 0.127 0.873 8 C 0.026 3.974 9 N -0.387 5.387 10 C 0.406 3.594 11 O -0.512 6.512 12 N -0.382 5.382 13 C 0.013 3.987 14 C 0.221 3.779 15 O -0.512 6.512 16 N -0.195 5.195 17 C -0.465 4.465 18 H 0.104 0.896 19 C -0.212 4.212 20 N -0.556 5.556 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.197 1.197 24 H -0.196 1.196 25 O -0.305 6.305 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.115 0.885 36 H 0.246 0.754 37 H 0.247 0.753 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.233 0.767 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.060 9.308 23.019 25.340 hybrid contribution -0.488 -0.150 -1.173 1.280 sum -5.548 9.158 21.846 24.329 Atomic orbital electron populations 1.22368 0.92572 1.03646 1.04014 1.23616 0.93889 0.91717 0.74348 1.22099 1.02054 0.93115 1.03967 1.88887 1.69932 1.42505 1.29965 1.24244 0.96891 0.90279 0.93291 1.24324 0.99313 0.84442 0.93727 0.87331 1.21212 0.95360 1.00841 0.79946 1.44811 1.18195 1.65141 1.10577 1.15883 0.84159 0.78806 0.80571 1.90886 1.19669 1.59158 1.81492 1.44683 1.19243 1.65386 1.08840 1.20593 0.93038 0.99930 0.85114 1.20431 0.87916 0.83456 0.86112 1.90471 1.20657 1.54742 1.85367 1.41842 1.16148 1.52528 1.09018 1.19764 0.99328 1.39378 0.88021 0.89601 1.26133 0.96929 0.95544 1.02615 1.69686 1.13679 1.39767 1.32500 0.84808 0.78057 0.78318 0.76766 1.19442 1.19678 1.19611 1.89401 1.86234 1.22177 1.32728 0.89844 0.90165 0.91683 0.92203 0.90292 0.89346 0.89790 0.85340 0.91634 0.88480 0.75401 0.75251 0.89092 0.88817 0.76665 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.20 71.98 0.66 -1.48 16 2 C 0.24 3.85 1.47 30.59 0.04 3.89 16 3 C -0.16 -2.19 9.24 71.98 0.66 -1.53 16 4 O -0.39 -6.49 10.87 -126.22 -1.37 -7.86 16 5 C 0.03 0.36 7.53 72.64 0.55 0.91 16 6 C 0.04 0.56 3.55 31.25 0.11 0.67 16 7 H 0.11 1.22 8.14 -2.39 -0.02 1.21 16 8 C 0.15 2.74 5.45 86.38 0.47 3.21 16 9 N -0.73 -16.62 5.56 -478.54 -2.66 -19.28 16 10 C 0.71 22.22 8.57 179.05 1.53 23.76 16 11 O -0.63 -23.92 16.34 -3.99 -0.07 -23.98 16 12 N -0.72 -23.94 5.53 -482.29 -2.67 -26.61 16 13 C 0.14 5.22 6.15 85.63 0.53 5.75 16 14 C 0.43 20.03 7.85 87.66 0.69 20.72 16 15 O -0.62 -32.23 15.24 -3.09 -0.05 -32.28 16 16 N -0.56 -28.13 5.29 -306.97 -1.62 -29.75 16 17 C -0.34 -18.49 9.68 84.04 0.81 -17.67 16 18 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 19 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 20 N -0.92 -48.68 13.05 21.66 0.28 -48.40 16 21 Si 1.00 41.74 29.55 68.60 2.03 43.77 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 O -0.38 -7.16 10.75 -126.22 -1.36 -8.51 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 0.98 8.04 -2.39 -0.02 0.96 16 33 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.41 7.85 8.49 -92.71 -0.79 7.06 16 37 H 0.41 13.26 7.45 -92.71 -0.69 12.56 16 38 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.40 19.27 7.90 -92.71 -0.73 18.53 16 41 H 0.28 13.85 8.31 -92.70 -0.77 13.08 16 Total: -1.00 -69.59 352.73 -2.08 -71.67 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -1.13 Total: 43.16 kcal Atomic # 6 Polarization: 31.55 SS G_CDS: 6.53 Total: 38.08 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -6.67 Total: -124.04 kcal Atomic # 8 Polarization: -69.79 SS G_CDS: -2.84 Total: -72.63 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -69.59 -2.08 -71.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807551663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.241 kcal (2) G-P(sol) polarization free energy of solvation -69.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds