Wall clock time and date at job start Tue Mar 31 2020 04:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 O 1.42967 * 109.46882 * 119.99591 * 2 1 3 5 5 C 1.43095 * 113.77014 * 61.20565 * 4 2 1 6 6 C 1.53266 * 108.94092 * 57.97057 * 5 4 2 7 7 N 1.46494 * 109.57182 * 185.66785 * 6 5 4 8 8 C 1.34782 * 119.99884 * 205.00143 * 7 6 5 9 9 O 1.21592 * 119.99590 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99995 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99598 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46816 * 179.97438 * 11 10 8 13 13 O 1.21293 * 119.99912 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00006 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00244 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99473 * 0.02562 * 15 14 12 17 17 C 1.38944 * 120.00084 * 179.97438 * 15 14 12 18 18 N 1.31415 * 120.00229 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00008 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46824 * 90.00008 * 19 17 15 21 21 H 1.48497 * 109.47222 * 210.00037 * 19 17 15 22 22 H 1.48501 * 109.47069 * 330.00686 * 19 17 15 23 23 C 1.53256 * 108.84277 * 305.47453 * 6 5 4 24 24 O 1.42958 * 109.47390 * 239.99497 * 2 1 3 25 25 H 1.08998 * 109.47729 * 300.00216 * 1 2 3 26 26 H 1.09002 * 109.47504 * 60.00628 * 1 2 3 27 27 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47553 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.46866 * 300.00069 * 3 2 1 30 30 H 1.09001 * 109.47462 * 59.99266 * 3 2 1 31 31 H 1.08999 * 109.55643 * 177.80695 * 5 4 2 32 32 H 1.08998 * 109.55964 * 298.13092 * 5 4 2 33 33 H 1.08997 * 109.57081 * 65.28194 * 6 5 4 34 34 H 0.96998 * 120.00553 * 24.99372 * 7 6 5 35 35 H 0.96993 * 119.99923 * 359.97438 * 10 8 7 36 36 H 1.08999 * 109.47279 * 299.99543 * 11 10 8 37 37 H 1.09008 * 109.47280 * 60.00149 * 11 10 8 38 38 H 0.96999 * 119.99550 * 359.97438 * 14 12 11 39 39 H 0.96995 * 119.99866 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.55755 * 174.36031 * 23 6 5 41 41 H 1.08996 * 109.55968 * 294.68708 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6739 1.1674 5 6 1.6040 -2.0448 1.2467 6 6 2.1043 -2.7830 0.0002 7 7 1.5860 -4.1532 0.0003 8 6 2.2455 -5.1232 -0.6637 9 8 3.2703 -4.8608 -1.2632 10 7 1.7684 -6.3837 -0.6641 11 6 2.4849 -7.4378 -1.3863 12 6 1.7490 -8.7436 -1.2295 13 8 0.7264 -8.7890 -0.5788 14 7 2.2272 -9.8608 -1.8122 15 6 1.5581 -11.0488 -1.6691 16 1 0.6475 -11.0892 -1.0897 17 6 2.0508 -12.2005 -2.2703 18 7 3.1585 -12.1512 -2.9756 19 14 1.1395 -13.8193 -2.0747 20 1 0.1515 -13.9670 -3.1735 21 1 2.1092 -14.9427 -2.1266 22 1 0.4331 -13.8350 -0.7686 23 6 1.6041 -2.0449 -1.2463 24 8 2.0066 -0.6740 -1.1672 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 2.0348 -2.5005 2.1382 32 1 0.5166 -2.1037 1.2939 33 1 3.1941 -2.8027 0.0003 34 1 0.7684 -4.3625 0.4783 35 1 0.9507 -6.5929 -0.1862 36 1 2.5440 -7.1784 -2.4433 37 1 3.4914 -7.5373 -0.9797 38 1 3.0449 -9.8243 -2.3328 39 1 3.5022 -12.9551 -3.3956 40 1 2.0350 -2.5008 -2.1378 41 1 0.5168 -2.1039 -1.2936 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807553795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:15 Heat of formation + Delta-G solvation = -183.942943 kcal Electronic energy + Delta-G solvation = -24515.580845 eV Core-core repulsion = 20622.684595 eV Total energy + Delta-G solvation = -3892.896250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.152 amu Computer time = 8.66 seconds Orbital eigenvalues (eV) -41.83400 -40.95408 -39.98658 -36.82817 -36.58665 -36.16830 -35.30888 -33.42536 -33.24138 -30.85839 -28.96775 -28.19458 -27.19425 -26.32433 -23.69786 -22.09061 -21.39761 -21.14742 -20.14159 -19.61661 -18.73510 -18.02360 -17.44844 -17.10402 -16.94721 -16.68440 -16.41502 -16.13147 -16.08451 -15.60953 -15.45165 -15.17111 -14.53994 -14.35454 -13.98655 -13.94402 -13.65166 -13.61640 -13.53870 -13.19552 -13.06452 -12.90831 -12.71216 -12.45284 -12.30946 -12.12670 -12.08470 -11.57795 -11.56508 -11.49475 -10.61854 -10.55466 -10.42596 -10.10202 -9.89668 -8.50689 -6.00935 1.36772 1.38749 1.44933 1.56671 1.89402 2.02593 2.28010 2.50002 2.61531 3.03158 3.16624 3.27767 3.46624 3.60409 3.73154 3.87722 3.90834 4.20567 4.24487 4.43262 4.45752 4.50943 4.57451 4.67064 4.71388 4.72874 4.79483 4.80963 5.06643 5.20891 5.26407 5.27551 5.38926 5.79624 5.86998 5.92851 6.13883 6.48094 6.95905 7.03737 7.40943 7.47854 7.94450 8.66173 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.050909 B = 0.002259 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.868011 B =12391.030160 C =12594.217367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.246 3.754 3 C -0.129 4.129 4 O -0.392 6.392 5 C 0.054 3.946 6 C 0.104 3.896 7 N -0.718 5.718 8 C 0.707 3.293 9 O -0.628 6.628 10 N -0.719 5.719 11 C 0.141 3.859 12 C 0.434 3.566 13 O -0.623 6.623 14 N -0.560 5.560 15 C -0.336 4.336 16 H 0.087 0.913 17 C -0.012 4.012 18 N -0.916 5.916 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.273 1.273 22 H -0.269 1.269 23 C 0.047 3.953 24 O -0.399 6.399 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.416 0.584 35 H 0.412 0.588 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.083 0.917 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.405 23.333 6.719 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.170 3.830 3 C -0.186 4.186 4 O -0.312 6.312 5 C -0.023 4.023 6 C -0.002 4.002 7 N -0.377 5.377 8 C 0.407 3.593 9 O -0.509 6.509 10 N -0.377 5.377 11 C 0.012 3.988 12 C 0.221 3.779 13 O -0.511 6.511 14 N -0.195 5.195 15 C -0.465 4.465 16 H 0.105 0.895 17 C -0.213 4.213 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.196 1.196 21 H -0.198 1.198 22 H -0.194 1.194 23 C -0.030 4.030 24 O -0.319 6.319 25 H 0.111 0.889 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.253 0.747 35 H 0.250 0.750 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.808 23.596 6.499 24.942 hybrid contribution -0.586 -1.556 -0.102 1.666 sum -5.394 22.040 6.397 23.575 Atomic orbital electron populations 1.22823 0.93916 1.03996 1.05219 1.23298 0.92955 0.91676 0.75044 1.21688 1.02456 0.89711 1.04716 1.88184 1.76766 1.22957 1.43276 1.22959 1.01210 0.81132 0.96977 1.21895 1.00284 0.80690 0.97376 1.44585 1.29858 1.06746 1.56536 1.15895 0.82880 0.80671 0.79861 1.90917 1.26876 1.82556 1.50535 1.44634 1.30320 1.06151 1.56606 1.20601 0.95436 0.84342 0.98374 1.20393 0.87295 0.86047 0.84125 1.90467 1.27857 1.86347 1.46449 1.41846 1.25014 1.07098 1.45582 1.19734 1.08607 0.85885 1.32298 0.89470 1.26143 0.96990 1.02802 0.95341 1.69683 1.21300 1.31654 1.33006 0.84859 0.77788 0.76404 0.78885 1.19565 1.19769 1.19382 1.23071 1.00312 0.81150 0.98509 1.88179 1.76746 1.23230 1.43792 0.88875 0.89641 0.91382 0.91974 0.89014 0.88444 0.86504 0.89346 0.90519 0.74671 0.74970 0.88968 0.89039 0.76706 0.91093 0.89854 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.28 8.11 71.98 0.58 -1.70 16 2 C 0.25 4.16 1.50 30.59 0.05 4.21 16 3 C -0.13 -1.67 9.21 71.98 0.66 -1.01 16 4 O -0.39 -7.42 10.35 -126.22 -1.31 -8.72 16 5 C 0.05 0.83 6.08 72.07 0.44 1.27 16 6 C 0.10 2.20 2.86 45.17 0.13 2.33 16 7 N -0.72 -15.00 5.09 -456.98 -2.33 -17.33 16 8 C 0.71 21.40 8.54 179.05 1.53 22.93 16 9 O -0.63 -23.93 16.01 -4.01 -0.06 -23.99 16 10 N -0.72 -22.49 5.53 -482.27 -2.67 -25.16 16 11 C 0.14 5.05 6.15 85.63 0.53 5.58 16 12 C 0.43 19.60 7.85 87.66 0.69 20.28 16 13 O -0.62 -31.25 15.24 -3.07 -0.05 -31.30 16 14 N -0.56 -27.76 5.29 -306.98 -1.62 -29.39 16 15 C -0.34 -18.29 9.68 84.04 0.81 -17.47 16 16 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 17 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 18 N -0.92 -48.48 13.05 21.66 0.28 -48.20 16 19 Si 1.00 41.38 29.55 68.60 2.03 43.41 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 C 0.05 1.02 6.19 72.07 0.45 1.46 16 24 O -0.40 -9.02 10.35 -126.22 -1.31 -10.33 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.73 5.11 -2.39 -0.01 0.72 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 0.90 6.53 -2.39 -0.02 0.89 16 33 H 0.08 2.13 7.58 -2.39 -0.02 2.11 16 34 H 0.42 5.95 8.62 -92.71 -0.80 5.15 16 35 H 0.41 12.24 7.45 -92.71 -0.69 11.55 16 36 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 38 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 39 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.08 1.33 6.53 -2.39 -0.02 1.32 16 Total: -1.00 -69.70 341.91 -1.83 -71.53 By element: Atomic # 1 Polarization: 42.89 SS G_CDS: -1.13 Total: 41.76 kcal Atomic # 6 Polarization: 31.38 SS G_CDS: 6.33 Total: 37.71 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -6.33 Total: -120.07 kcal Atomic # 8 Polarization: -71.62 SS G_CDS: -2.72 Total: -74.34 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -69.70 -1.83 -71.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807553795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.412 kcal (2) G-P(sol) polarization free energy of solvation -69.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.66 seconds