Wall clock time and date at job start Tue Mar 31 2020 03:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35048 * 126.39770 * 2 1 4 4 N 1.30503 * 108.69678 * 180.26644 * 3 2 1 5 5 C 1.34124 * 109.25857 * 359.76808 * 4 3 2 6 6 C 1.34668 * 108.02177 * 359.97438 * 5 4 3 7 7 C 1.50695 * 126.59363 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47096 * 95.02691 * 7 6 5 9 9 S 1.65608 * 120.00079 * 164.99965 * 8 7 6 10 10 O 1.42095 * 104.27841 * 181.07390 * 9 8 7 11 11 O 1.42102 * 104.27658 * 308.93104 * 9 8 7 12 12 C 1.81406 * 104.44741 * 65.00031 * 9 8 7 13 13 C 1.52991 * 109.46937 * 179.97438 * 12 9 8 14 14 C 1.53006 * 109.47347 * 299.99993 * 13 12 9 15 15 C 1.53005 * 109.47331 * 60.00120 * 13 12 9 16 16 C 1.50698 * 109.47171 * 180.02562 * 13 12 9 17 17 H 1.08003 * 120.00001 * 359.97438 * 16 13 12 18 18 C 1.37879 * 120.00289 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99796 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00185 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.46980 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47050 * 120.00138 * 20 18 16 23 23 H 1.48495 * 109.47634 * 240.00296 * 20 18 16 24 24 H 1.09002 * 109.46998 * 270.12465 * 1 2 3 25 25 H 1.08999 * 109.47111 * 30.12461 * 1 2 3 26 26 H 1.09000 * 109.47225 * 150.12432 * 1 2 3 27 27 H 1.08003 * 125.64999 * 359.97438 * 3 2 1 28 28 H 1.07997 * 125.99239 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47187 * 335.03173 * 7 6 5 30 30 H 1.09001 * 109.47274 * 215.02717 * 7 6 5 31 31 H 0.97002 * 120.00027 * 345.00475 * 8 7 6 32 32 H 1.09000 * 109.47167 * 300.00580 * 12 9 8 33 33 H 1.09000 * 109.46895 * 59.99901 * 12 9 8 34 34 H 1.09001 * 109.47006 * 60.00247 * 14 13 12 35 35 H 1.09000 * 109.47027 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.47080 * 300.00424 * 14 13 12 37 37 H 1.08996 * 109.46858 * 59.99924 * 15 13 12 38 38 H 1.09000 * 109.46935 * 179.97438 * 15 13 12 39 39 H 1.09001 * 109.47174 * 299.99846 * 15 13 12 40 40 H 0.96998 * 119.99506 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6902 -0.0057 5 6 3.5460 -0.6505 -0.0045 6 6 2.2772 -1.1018 0.0029 7 6 1.8363 -2.5428 0.0064 8 7 1.5854 -2.9734 1.3840 9 16 0.7437 -4.3697 1.6748 10 8 0.6752 -4.4489 3.0919 11 8 -0.4340 -4.2388 0.8906 12 6 1.8054 -5.6840 1.0144 13 6 1.1296 -7.0401 1.2262 14 6 0.9045 -7.2698 2.7221 15 6 -0.2165 -7.0583 0.4992 16 6 2.0118 -8.1321 0.6781 17 1 2.9596 -7.8835 0.2237 18 6 1.6087 -9.4483 0.7557 19 7 0.4544 -9.7509 1.3086 20 14 2.7019 -10.8017 0.0757 21 1 3.9377 -10.2027 -0.4893 22 1 3.0623 -11.7421 1.1670 23 1 1.9751 -11.5363 -0.9907 24 1 -0.3633 0.0022 1.0277 25 1 -0.3633 0.8889 -0.5158 26 1 -0.3634 -0.8911 -0.5119 27 1 1.9334 2.1145 -0.0004 28 1 4.4368 -1.2612 -0.0078 29 1 2.6184 -3.1631 -0.4314 30 1 0.9220 -2.6444 -0.5783 31 1 1.9121 -2.4406 2.1258 32 1 1.9662 -5.5201 -0.0512 33 1 2.7642 -5.6713 1.5326 34 1 0.2666 -6.4800 3.1189 35 1 0.4235 -8.2362 2.8729 36 1 1.8635 -7.2568 3.2400 37 1 -0.0561 -6.8948 -0.5665 38 1 -0.6977 -8.0247 0.6497 39 1 -0.8545 -6.2686 0.8960 40 1 0.1706 -10.6769 1.3629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867935930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:23 Heat of formation + Delta-G solvation = -10.838845 kcal Electronic energy + Delta-G solvation = -23204.913914 eV Core-core repulsion = 19762.276892 eV Total energy + Delta-G solvation = -3442.637022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29242 -36.65579 -36.32024 -35.58887 -35.29118 -34.12945 -31.69972 -30.11896 -27.21404 -26.68641 -25.75758 -25.55801 -25.23331 -21.64389 -20.40711 -19.65697 -18.86103 -17.67329 -17.11717 -16.23584 -16.01858 -15.63374 -15.44823 -14.87182 -14.74232 -14.49849 -13.98069 -13.53375 -13.30556 -13.13706 -13.04200 -12.98532 -12.66405 -12.55044 -12.14745 -11.82639 -11.51958 -11.15404 -11.11084 -10.96476 -10.75530 -10.40792 -10.32471 -10.18911 -10.14309 -9.80925 -9.72494 -9.69040 -9.36517 -8.74085 -8.61846 -8.43383 -6.06558 -4.18545 0.74795 1.76179 2.55111 2.92158 3.23366 3.26031 3.32113 3.34639 4.19692 4.32737 4.37048 4.47451 4.52597 4.66977 4.85876 4.94470 5.06408 5.19076 5.21594 5.31983 5.53941 5.57683 5.64575 5.84929 6.13556 6.33238 6.51181 6.66117 6.75474 6.85949 6.94084 6.95817 7.03817 7.27718 7.46337 7.65122 7.84963 7.94537 8.06090 8.29486 8.80357 9.47258 10.94812 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.003814 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.832985 B = 7338.780715 C = 7839.074414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.452 5.452 3 C 0.183 3.817 4 N -0.496 5.496 5 C -0.007 4.007 6 C -0.035 4.035 7 C 0.193 3.807 8 N -1.129 6.129 9 S 2.592 3.408 10 O -0.962 6.962 11 O -0.966 6.966 12 C -0.581 4.581 13 C 0.081 3.919 14 C -0.164 4.164 15 C -0.163 4.163 16 C -0.502 4.502 17 H 0.060 0.940 18 C 0.064 3.936 19 N -0.884 5.884 20 Si 0.896 3.104 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.205 0.795 28 H 0.173 0.827 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.414 0.586 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.027 0.973 35 H 0.095 0.905 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.095 0.905 39 H 0.028 0.972 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 17.243 -3.139 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.135 5.135 3 C -0.099 4.099 4 N -0.214 5.214 5 C -0.157 4.157 6 C -0.151 4.151 7 C 0.066 3.934 8 N -0.886 5.886 9 S 2.690 3.310 10 O -0.953 6.953 11 O -0.956 6.956 12 C -0.714 4.714 13 C 0.079 3.921 14 C -0.222 4.222 15 C -0.221 4.221 16 C -0.541 4.541 17 H 0.078 0.922 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.724 3.276 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.222 0.778 28 H 0.190 0.810 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.247 0.753 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.046 0.954 35 H 0.114 0.886 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.046 0.954 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.149 17.482 -2.841 17.712 hybrid contribution 0.592 -1.149 -0.366 1.344 sum 0.741 16.333 -3.206 16.661 Atomic orbital electron populations 1.22152 0.76226 1.05080 1.04211 1.45347 1.07865 1.06632 1.53679 1.24985 0.85671 0.93468 1.05804 1.70317 1.19386 1.11945 1.19751 1.22202 0.95740 0.91123 1.06641 1.21165 0.91390 0.89434 1.13141 1.19539 1.01940 0.88391 0.83576 1.56017 1.76962 1.43129 1.12533 1.05682 0.75915 0.74498 0.74859 1.93562 1.86606 1.85752 1.29357 1.93529 1.44645 1.85193 1.72211 1.30517 1.14398 1.15142 1.11388 1.17946 0.93123 0.87102 0.93944 1.22279 1.00214 1.03694 0.95977 1.22273 0.97572 1.03377 0.98881 1.20981 1.04097 0.90216 1.38814 0.92185 1.24943 0.95188 0.98621 0.95018 1.69811 1.20002 1.18497 1.43860 0.86475 0.80576 0.81838 0.78730 1.19797 1.20951 1.20956 0.90168 0.89247 0.88927 0.77816 0.80972 0.89108 0.89623 0.75323 0.86377 0.86049 0.95430 0.88625 0.94420 0.94473 0.88649 0.95368 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.01 59.85 0.66 1.11 16 2 N -0.45 -4.34 3.15 -121.37 -0.38 -4.73 16 3 C 0.18 1.76 12.56 -90.37 -1.14 0.63 16 4 N -0.50 -6.15 11.25 -14.66 -0.16 -6.31 16 5 C -0.01 -0.08 11.79 -17.81 -0.21 -0.29 16 6 C -0.04 -0.39 6.35 -81.60 -0.52 -0.91 16 7 C 0.19 2.11 6.37 -5.20 -0.03 2.08 16 8 N -1.13 -14.35 5.88 -11.66 -0.07 -14.42 16 9 S 2.59 44.89 4.49 -107.50 -0.48 44.41 16 10 O -0.96 -19.49 15.70 -57.54 -0.90 -20.39 16 11 O -0.97 -18.68 15.12 -57.54 -0.87 -19.55 16 12 C -0.58 -10.69 5.01 37.15 0.19 -10.51 16 13 C 0.08 1.91 0.52 -155.66 -0.08 1.83 16 14 C -0.16 -3.96 7.77 37.16 0.29 -3.67 16 15 C -0.16 -3.88 7.78 37.16 0.29 -3.60 16 16 C -0.50 -12.87 8.01 -34.44 -0.28 -13.14 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.68 5.15 -17.82 -0.09 1.58 16 19 N -0.88 -23.75 9.35 55.43 0.52 -23.23 16 20 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.69 7.30 -51.93 -0.38 0.31 16 27 H 0.21 1.15 8.06 -52.48 -0.42 0.73 16 28 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 0.93 6.92 -51.93 -0.36 0.57 16 31 H 0.41 4.84 8.61 -34.48 -0.30 4.54 16 32 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 33 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 34 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 35 H 0.10 2.50 6.07 -51.93 -0.32 2.18 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 39 H 0.03 0.63 5.47 -51.93 -0.28 0.35 16 40 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -33.39 333.17 -8.85 -42.25 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.58 Total: 6.53 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: -0.92 Total: -24.89 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.10 Total: -48.69 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -1.77 Total: -39.95 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 16 Polarization: 44.89 SS G_CDS: -0.48 Total: 44.41 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.39 -8.85 -42.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867935930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.410 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds