Wall clock time and date at job start Tue Mar 31 2020 03:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35048 * 126.39770 * 2 1 4 4 N 1.30503 * 108.69678 * 180.26644 * 3 2 1 5 5 C 1.34124 * 109.25857 * 359.76808 * 4 3 2 6 6 C 1.34668 * 108.02177 * 359.97438 * 5 4 3 7 7 C 1.50695 * 126.59363 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47096 * 95.02691 * 7 6 5 9 9 S 1.65608 * 120.00079 * 164.99965 * 8 7 6 10 10 O 1.42095 * 104.27841 * 181.07390 * 9 8 7 11 11 O 1.42102 * 104.27658 * 308.93104 * 9 8 7 12 12 C 1.81406 * 104.44741 * 65.00031 * 9 8 7 13 13 C 1.52991 * 109.46937 * 179.97438 * 12 9 8 14 14 C 1.53006 * 109.47347 * 299.99993 * 13 12 9 15 15 C 1.53005 * 109.47331 * 60.00120 * 13 12 9 16 16 C 1.50698 * 109.47171 * 180.02562 * 13 12 9 17 17 H 1.08003 * 120.00001 * 359.97438 * 16 13 12 18 18 C 1.37879 * 120.00289 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99796 * 359.97438 * 18 16 13 20 20 Si 1.86796 * 120.00185 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.46980 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47050 * 120.00138 * 20 18 16 23 23 H 1.48495 * 109.47634 * 240.00296 * 20 18 16 24 24 H 1.09002 * 109.46998 * 270.12465 * 1 2 3 25 25 H 1.08999 * 109.47111 * 30.12461 * 1 2 3 26 26 H 1.09000 * 109.47225 * 150.12432 * 1 2 3 27 27 H 1.08003 * 125.64999 * 359.97438 * 3 2 1 28 28 H 1.07997 * 125.99239 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47187 * 335.03173 * 7 6 5 30 30 H 1.09001 * 109.47274 * 215.02717 * 7 6 5 31 31 H 0.97002 * 120.00027 * 345.00475 * 8 7 6 32 32 H 1.09000 * 109.47167 * 300.00580 * 12 9 8 33 33 H 1.09000 * 109.46895 * 59.99901 * 12 9 8 34 34 H 1.09001 * 109.47006 * 60.00247 * 14 13 12 35 35 H 1.09000 * 109.47027 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.47080 * 300.00424 * 14 13 12 37 37 H 1.08996 * 109.46858 * 59.99924 * 15 13 12 38 38 H 1.09000 * 109.46935 * 179.97438 * 15 13 12 39 39 H 1.09001 * 109.47174 * 299.99846 * 15 13 12 40 40 H 0.96998 * 119.99506 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6902 -0.0057 5 6 3.5460 -0.6505 -0.0045 6 6 2.2772 -1.1018 0.0029 7 6 1.8363 -2.5428 0.0064 8 7 1.5854 -2.9734 1.3840 9 16 0.7437 -4.3697 1.6748 10 8 0.6752 -4.4489 3.0919 11 8 -0.4340 -4.2388 0.8906 12 6 1.8054 -5.6840 1.0144 13 6 1.1296 -7.0401 1.2262 14 6 0.9045 -7.2698 2.7221 15 6 -0.2165 -7.0583 0.4992 16 6 2.0118 -8.1321 0.6781 17 1 2.9596 -7.8835 0.2237 18 6 1.6087 -9.4483 0.7557 19 7 0.4544 -9.7509 1.3086 20 14 2.7019 -10.8017 0.0757 21 1 3.9377 -10.2027 -0.4893 22 1 3.0623 -11.7421 1.1670 23 1 1.9751 -11.5363 -0.9907 24 1 -0.3633 0.0022 1.0277 25 1 -0.3633 0.8889 -0.5158 26 1 -0.3634 -0.8911 -0.5119 27 1 1.9334 2.1145 -0.0004 28 1 4.4368 -1.2612 -0.0078 29 1 2.6184 -3.1631 -0.4314 30 1 0.9220 -2.6444 -0.5783 31 1 1.9121 -2.4406 2.1258 32 1 1.9662 -5.5201 -0.0512 33 1 2.7642 -5.6713 1.5326 34 1 0.2666 -6.4800 3.1189 35 1 0.4235 -8.2362 2.8729 36 1 1.8635 -7.2568 3.2400 37 1 -0.0561 -6.8948 -0.5665 38 1 -0.6977 -8.0247 0.6497 39 1 -0.8545 -6.2686 0.8960 40 1 0.1706 -10.6769 1.3629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867935930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:23 Heat of formation + Delta-G solvation = -33.489208 kcal Electronic energy + Delta-G solvation = -23205.896108 eV Core-core repulsion = 19762.276892 eV Total energy + Delta-G solvation = -3443.619216 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.03998 -38.13588 -38.10312 -36.93115 -36.45777 -34.83568 -33.61537 -30.98852 -28.29277 -27.81959 -27.66888 -27.23963 -26.39862 -22.38662 -21.45040 -21.09550 -20.27094 -18.86620 -18.16318 -17.79058 -17.20631 -16.91626 -16.65679 -16.48438 -15.82387 -15.56580 -14.98831 -14.82116 -14.58213 -14.40608 -14.25819 -13.94826 -13.79296 -13.76964 -13.49539 -13.17377 -13.01607 -12.90016 -12.81842 -12.72591 -12.47786 -12.17547 -12.10954 -11.94021 -11.54453 -11.38905 -10.97944 -10.70052 -10.54422 -10.40667 -10.38007 -9.43352 -8.01833 -6.19941 -0.63486 0.96406 1.44058 1.47781 1.56778 1.89008 1.95563 2.23744 2.45565 2.84962 3.20874 3.31379 3.54976 3.90117 3.98482 4.02129 4.10868 4.21409 4.29916 4.40008 4.56608 4.63071 4.69692 4.78692 4.82206 4.88885 4.90669 5.02060 5.10910 5.38652 5.41545 5.52981 5.67137 5.74062 5.99885 6.00827 6.14122 6.27321 6.36188 6.85540 7.09236 7.48591 8.98062 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.003814 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.832985 B = 7338.780715 C = 7839.074414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.454 5.454 3 C 0.190 3.810 4 N -0.535 5.535 5 C -0.020 4.020 6 C -0.046 4.046 7 C 0.186 3.814 8 N -1.112 6.112 9 S 2.616 3.384 10 O -0.994 6.994 11 O -0.986 6.986 12 C -0.586 4.586 13 C 0.067 3.933 14 C -0.161 4.161 15 C -0.159 4.159 16 C -0.515 4.515 17 H 0.065 0.935 18 C 0.017 3.983 19 N -0.908 5.908 20 Si 0.953 3.047 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.284 1.284 24 H 0.081 0.919 25 H 0.121 0.879 26 H 0.086 0.914 27 H 0.241 0.759 28 H 0.182 0.818 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.421 0.579 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 18.825 -4.052 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.137 5.137 3 C -0.092 4.092 4 N -0.254 5.254 5 C -0.170 4.170 6 C -0.162 4.162 7 C 0.060 3.940 8 N -0.873 5.873 9 S 2.714 3.286 10 O -0.984 6.984 11 O -0.976 6.976 12 C -0.719 4.719 13 C 0.065 3.935 14 C -0.219 4.219 15 C -0.217 4.217 16 C -0.554 4.554 17 H 0.083 0.917 18 C -0.182 4.182 19 N -0.547 5.547 20 Si 0.779 3.221 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.210 1.210 24 H 0.100 0.900 25 H 0.139 0.861 26 H 0.104 0.896 27 H 0.257 0.743 28 H 0.199 0.801 29 H 0.130 0.870 30 H 0.106 0.894 31 H 0.256 0.744 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.900 19.055 -3.754 19.442 hybrid contribution 0.342 -1.529 -0.092 1.569 sum 1.242 17.527 -3.846 17.986 Atomic orbital electron populations 1.22376 0.74715 1.06397 1.04739 1.45548 1.08826 1.06262 1.53015 1.25700 0.85040 0.94806 1.03695 1.70313 1.21098 1.12429 1.21517 1.22479 0.96495 0.91292 1.06705 1.21112 0.91512 0.89638 1.13955 1.19780 1.02902 0.89053 0.82236 1.55554 1.76462 1.41346 1.13891 1.04680 0.75510 0.74792 0.73616 1.93515 1.87103 1.86486 1.31290 1.93499 1.45978 1.85656 1.72484 1.30461 1.14956 1.12948 1.13555 1.17937 0.93028 0.89559 0.92930 1.22217 1.00089 1.02455 0.97105 1.22195 0.97999 1.02075 0.99420 1.21345 1.04489 0.91029 1.38504 0.91712 1.25665 0.96275 1.00775 0.95508 1.69953 1.21300 1.18641 1.44826 0.85582 0.79289 0.79320 0.77878 1.18872 1.21203 1.21017 0.90006 0.86101 0.89574 0.74344 0.80101 0.86960 0.89400 0.74395 0.83964 0.84367 0.94910 0.91166 0.94224 0.93833 0.91293 0.94725 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 11.01 127.77 1.41 2.07 16 2 N -0.45 -7.63 3.15 -537.89 -1.70 -9.33 16 3 C 0.19 3.18 12.56 180.26 2.26 5.45 16 4 N -0.54 -12.37 11.25 -200.31 -2.25 -14.62 16 5 C -0.02 -0.43 11.79 83.52 0.98 0.55 16 6 C -0.05 -0.91 6.35 40.95 0.26 -0.65 16 7 C 0.19 3.65 6.37 85.63 0.55 4.20 16 8 N -1.11 -25.95 5.88 -190.79 -1.12 -27.07 16 9 S 2.62 86.76 4.49 -56.49 -0.25 86.51 16 10 O -0.99 -39.36 15.70 -127.65 -2.00 -41.36 16 11 O -0.99 -36.86 15.12 -127.65 -1.93 -38.79 16 12 C -0.59 -20.51 5.01 71.98 0.36 -20.15 16 13 C 0.07 3.13 0.52 -52.93 -0.03 3.10 16 14 C -0.16 -7.82 7.77 71.98 0.56 -7.26 16 15 C -0.16 -7.56 7.78 71.98 0.56 -7.00 16 16 C -0.51 -26.00 8.01 25.60 0.21 -25.80 16 17 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 18 C 0.02 0.89 5.15 84.65 0.44 1.32 16 19 N -0.91 -49.57 9.35 21.45 0.20 -49.37 16 20 Si 0.95 41.48 29.54 68.60 2.03 43.50 16 21 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 24 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 1.10 7.30 -2.39 -0.02 1.09 16 27 H 0.24 1.87 8.06 -2.91 -0.02 1.85 16 28 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 1.71 6.92 -2.39 -0.02 1.69 16 31 H 0.42 9.01 8.61 -96.74 -0.83 8.18 16 32 H 0.14 4.21 8.14 -2.39 -0.02 4.19 16 33 H 0.14 4.33 8.14 -2.39 -0.02 4.31 16 34 H 0.03 1.51 5.46 -2.39 -0.01 1.50 16 35 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 39 H 0.03 1.55 5.47 -2.39 -0.01 1.54 16 40 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -71.30 333.17 0.75 -70.56 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.22 Total: 24.13 kcal Atomic # 6 Polarization: -51.71 SS G_CDS: 7.56 Total: -44.15 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -4.87 Total: -100.39 kcal Atomic # 8 Polarization: -76.22 SS G_CDS: -3.93 Total: -80.15 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 86.76 SS G_CDS: -0.25 Total: 86.51 kcal Total: -71.30 0.75 -70.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867935930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.066 kcal (2) G-P(sol) polarization free energy of solvation -71.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds