Wall clock time and date at job start Tue Mar 31 2020 04:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35313 * 125.86631 * 2 1 4 4 C 1.35352 * 106.17250 * 180.11594 * 3 2 1 5 5 C 1.50699 * 126.75159 * 179.85136 * 4 3 2 6 6 C 1.52997 * 109.47601 * 124.71023 * 5 4 3 7 7 C 1.50699 * 109.47601 * 179.97438 * 6 5 4 8 8 O 1.21270 * 119.99540 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00027 * 179.71943 * 7 6 5 10 10 C 1.39262 * 120.00087 * 175.13534 * 9 7 6 11 11 C 1.39674 * 119.57909 * 185.39964 * 10 9 7 12 12 C 1.38657 * 119.49803 * 179.77255 * 11 10 9 13 13 C 1.38343 * 118.66679 * 0.48718 * 12 11 10 14 14 C 1.40582 * 119.13273 * 359.75822 * 13 12 11 15 15 C 1.41335 * 119.78534 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00494 * 359.97195 * 15 14 13 17 17 C 1.40037 * 119.99590 * 179.97438 * 15 14 13 18 18 N 1.30745 * 119.99916 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99831 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47373 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46965 * 119.99981 * 19 17 15 22 22 H 1.48506 * 109.46876 * 240.00158 * 19 17 15 23 23 N 1.31903 * 119.57715 * 5.66915 * 10 9 7 24 24 N 1.33766 * 106.49585 * 359.58727 * 4 3 2 25 25 N 1.28630 * 108.88849 * 0.26357 * 24 4 3 26 26 H 1.08999 * 109.47185 * 270.33353 * 1 2 3 27 27 H 1.09001 * 109.46932 * 30.33098 * 1 2 3 28 28 H 1.09002 * 109.46990 * 150.32879 * 1 2 3 29 29 H 1.07996 * 126.91265 * 359.96265 * 3 2 1 30 30 H 1.09008 * 109.47306 * 4.70976 * 5 4 3 31 31 H 1.08999 * 109.47120 * 244.71386 * 5 4 3 32 32 H 1.09000 * 109.46984 * 59.99385 * 6 5 4 33 33 H 1.09008 * 109.46600 * 300.00359 * 6 5 4 34 34 H 0.97007 * 120.00265 * 355.14264 * 9 7 6 35 35 H 1.08003 * 120.25279 * 359.97438 * 11 10 9 36 36 H 1.08001 * 120.66787 * 180.22595 * 12 11 10 37 37 H 1.08003 * 120.43242 * 179.77341 * 13 12 11 38 38 H 0.96992 * 119.99772 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5321 0.6404 -0.0026 5 6 4.7880 1.4734 -0.0068 6 6 5.6701 1.0724 1.1772 7 6 6.9262 1.9049 1.1726 8 8 7.0987 2.7373 0.3078 9 7 7.8550 1.7285 2.1331 10 6 9.0598 2.4244 2.0729 11 6 10.0608 2.1520 3.0081 12 6 11.2615 2.8424 2.9437 13 6 11.4276 3.7941 1.9534 14 6 10.3802 4.0262 1.0447 15 6 10.5352 4.9948 0.0273 16 1 11.4558 5.5542 -0.0501 17 6 9.4950 5.2292 -0.8805 18 7 8.3804 4.5524 -0.7865 19 14 9.6995 6.5100 -2.2248 20 1 11.0428 7.1334 -2.1145 21 1 9.5627 5.8597 -3.5529 22 1 8.6554 7.5554 -2.0755 23 7 9.2390 3.3361 1.1366 24 7 3.4575 -0.6951 0.0051 25 7 2.2192 -1.0430 0.0065 26 1 -0.3633 0.0060 1.0276 27 1 -0.3633 0.8870 -0.5190 28 1 -0.3633 -0.8929 -0.5087 29 1 1.9381 2.1281 -0.0006 30 1 4.5249 2.5279 0.0769 31 1 5.3311 1.3072 -0.9372 32 1 5.9331 0.0179 1.0935 33 1 5.1269 1.2385 2.1076 34 1 7.6844 1.1168 2.8664 35 1 9.9021 1.4069 3.7737 36 1 12.0498 2.6443 3.6549 37 1 12.3498 4.3512 1.8791 38 1 7.6601 4.7145 -1.4155 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882468892.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:25 Heat of formation + Delta-G solvation = 119.393567 kcal Electronic energy + Delta-G solvation = -23322.161308 eV Core-core repulsion = 19782.020387 eV Total energy + Delta-G solvation = -3540.140921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.33298 -39.21526 -37.49456 -35.21449 -34.08859 -33.28555 -32.92771 -30.41060 -30.14554 -28.89911 -28.06591 -25.67896 -24.76704 -22.18696 -21.97062 -21.22584 -20.63597 -19.10505 -17.65840 -17.33826 -16.75785 -16.04839 -15.98930 -15.22141 -14.75360 -14.62196 -14.39604 -14.00297 -13.73305 -13.56047 -13.28819 -13.04225 -12.92153 -12.47326 -12.04413 -11.89528 -11.81912 -11.50959 -11.20736 -11.06586 -10.90595 -10.60595 -10.58615 -10.43577 -10.15933 -9.87569 -9.61383 -9.23027 -8.96922 -8.84146 -7.91598 -7.15113 -6.89961 -6.09597 -4.35397 1.46163 2.19043 2.47615 2.82558 3.11264 3.19841 3.23421 3.30131 3.83767 3.92865 4.09505 4.16553 4.39763 4.58759 4.82114 4.87297 4.96486 5.00074 5.33203 5.38351 5.50258 5.68151 5.88930 6.07090 6.09121 6.17675 6.28360 6.39767 6.41728 6.54787 6.75627 6.89016 6.90605 7.28629 7.60964 7.68785 7.86267 8.13339 8.25798 8.42270 8.53809 8.79449 9.10038 9.35892 10.30012 10.52536 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.003595 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.113101 B = 7786.472725 C = 9310.212904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.299 5.299 3 C -0.052 4.052 4 C -0.008 4.008 5 C -0.016 4.016 6 C -0.131 4.131 7 C 0.470 3.530 8 O -0.412 6.412 9 N -0.668 5.668 10 C 0.373 3.627 11 C -0.357 4.357 12 C -0.037 4.037 13 C -0.306 4.306 14 C 0.270 3.730 15 C -0.426 4.426 16 H 0.082 0.918 17 C 0.058 3.942 18 N -0.655 5.655 19 Si 0.895 3.105 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.276 1.276 23 N -0.473 5.473 24 N -0.264 5.264 25 N -0.092 5.092 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.191 0.809 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.399 0.601 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.458 -5.515 1.884 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.093 5.093 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.056 4.056 6 C -0.172 4.172 7 C 0.252 3.748 8 O -0.276 6.276 9 N -0.315 5.315 10 C 0.134 3.866 11 C -0.383 4.383 12 C -0.061 4.061 13 C -0.329 4.329 14 C 0.145 3.855 15 C -0.457 4.457 16 H 0.100 0.900 17 C -0.171 4.171 18 N -0.273 5.273 19 Si 0.719 3.281 20 H -0.187 1.187 21 H -0.201 1.201 22 H -0.201 1.201 23 N -0.192 5.192 24 N -0.131 5.131 25 N -0.072 5.072 26 H 0.108 0.892 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.208 0.792 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.232 0.768 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.288 -6.294 0.454 18.404 hybrid contribution 0.344 1.116 0.570 1.300 sum -16.944 -5.178 1.024 17.747 Atomic orbital electron populations 1.22224 0.73000 1.05779 1.04847 1.47213 1.09258 1.05084 1.47759 1.23446 0.90939 0.94673 1.11194 1.22200 0.95586 0.91330 1.05494 1.19629 0.89004 0.97321 0.99623 1.21581 0.94881 1.01246 0.99497 1.20740 0.84749 0.85727 0.83565 1.91137 1.74772 1.28938 1.32726 1.43463 1.16018 1.44889 1.27149 1.18650 0.84408 0.91280 0.92288 1.20519 0.97599 1.12621 1.07567 1.20563 0.95037 0.94468 0.96071 1.21621 1.01499 1.06819 1.03003 1.18408 0.85993 0.90317 0.90755 1.19601 1.00617 1.16399 1.09045 0.89994 1.26175 0.95473 0.96823 0.98608 1.70343 1.01406 1.27764 1.27826 0.86479 0.79362 0.81107 0.81128 1.18665 1.20078 1.20120 1.68709 1.22710 1.07576 1.20214 1.75057 1.09139 1.12327 1.16568 1.78289 0.96615 1.12209 1.20040 0.89208 0.88382 0.88191 0.79203 0.89207 0.89064 0.89047 0.90081 0.76804 0.89130 0.88698 0.88637 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.34 11.39 59.85 0.68 1.02 16 2 N -0.30 -2.95 3.74 -68.06 -0.25 -3.20 16 3 C -0.05 -0.53 11.54 -17.05 -0.20 -0.73 16 4 C -0.01 -0.11 6.50 -82.78 -0.54 -0.65 16 5 C -0.02 -0.23 5.08 -27.89 -0.14 -0.37 16 6 C -0.13 -1.91 5.68 -27.89 -0.16 -2.07 16 7 C 0.47 9.34 7.79 -10.99 -0.09 9.25 16 8 O -0.41 -10.04 11.76 5.57 0.07 -9.98 16 9 N -0.67 -13.33 5.38 -11.40 -0.06 -13.39 16 10 C 0.37 9.22 7.43 -154.98 -1.15 8.07 16 11 C -0.36 -8.19 9.95 -38.89 -0.39 -8.58 16 12 C -0.04 -0.86 10.15 -39.39 -0.40 -1.26 16 13 C -0.31 -7.84 9.83 -38.66 -0.38 -8.22 16 14 C 0.27 7.69 6.55 -85.00 -0.56 7.14 16 15 C -0.43 -11.81 9.14 -37.73 -0.34 -12.15 16 16 H 0.08 2.14 7.85 -52.49 -0.41 1.72 16 17 C 0.06 1.53 5.50 -17.34 -0.10 1.44 16 18 N -0.65 -18.00 9.00 55.55 0.50 -17.50 16 19 Si 0.89 19.24 29.56 -169.99 -5.02 14.22 16 20 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 N -0.47 -13.39 5.74 -10.26 -0.06 -13.45 16 24 N -0.26 -4.03 12.40 33.29 0.41 -3.61 16 25 N -0.09 -1.25 13.16 60.35 0.79 -0.46 16 26 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.09 1.21 8.08 -51.92 -0.42 0.80 16 31 H 0.09 1.43 8.10 -51.93 -0.42 1.01 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.40 6.21 8.70 -40.82 -0.36 5.85 16 35 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 36 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 38 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -36.25 332.55 -6.92 -43.17 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -4.55 Total: 6.31 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.75 Total: -7.11 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 1.33 Total: -51.62 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.25 -6.92 -43.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882468892.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.563 kcal (2) G-P(sol) polarization free energy of solvation -36.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds