Wall clock time and date at job start Tue Mar 31 2020 04:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28454 * 125.19886 * 2 1 4 4 C 1.31063 * 110.97153 * 180.28744 * 3 2 1 5 5 C 1.39534 * 107.60087 * 359.70243 * 4 3 2 6 6 C 1.36667 * 125.19937 * 179.78876 * 2 1 3 7 7 C 1.47140 * 126.93889 * 359.97438 * 6 2 1 8 8 O 1.21655 * 119.99677 * 99.64087 * 7 6 2 9 9 N 1.34770 * 120.00328 * 279.63919 * 7 6 2 10 10 C 1.40518 * 120.00055 * 174.84419 * 9 7 6 11 11 C 1.40668 * 126.08661 * 0.02562 * 10 9 7 12 12 N 1.30902 * 108.38928 * 179.97438 * 11 10 9 13 13 N 1.40074 * 108.41380 * 0.02562 * 12 11 10 14 14 C 1.37315 * 126.06957 * 180.02562 * 13 12 11 15 15 H 1.07992 * 120.00201 * 179.97438 * 14 13 12 16 16 C 1.38985 * 119.99932 * 359.97434 * 14 13 12 17 17 N 1.31297 * 120.00100 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00129 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47157 * 60.00067 * 18 16 14 20 20 H 1.48496 * 109.47313 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47281 * 299.99938 * 18 16 14 22 22 C 1.35702 * 126.08468 * 179.71279 * 10 9 7 23 23 C 1.50853 * 109.88162 * 180.02562 * 5 4 3 24 24 C 1.54421 * 105.16655 * 17.06174 * 23 5 4 25 25 C 1.51273 * 143.02661 * 179.66033 * 4 3 2 26 26 H 1.08998 * 109.46842 * 275.20057 * 1 2 3 27 27 H 1.09004 * 109.47236 * 35.19919 * 1 2 3 28 28 H 1.08999 * 109.46980 * 155.20177 * 1 2 3 29 29 H 0.97005 * 120.00005 * 354.83877 * 9 7 6 30 30 H 1.07997 * 125.80535 * 359.95293 * 11 10 9 31 31 H 0.96998 * 120.00157 * 180.02562 * 17 16 14 32 32 H 1.08004 * 126.25171 * 0.02562 * 22 10 9 33 33 H 1.09006 * 110.30151 * 135.97944 * 23 5 4 34 34 H 1.08997 * 110.30146 * 258.13208 * 23 5 4 35 35 H 1.09001 * 110.78625 * 92.01812 * 24 23 5 36 36 H 1.09004 * 110.77982 * 215.26620 * 24 23 5 37 37 H 1.09003 * 110.28142 * 43.95810 * 25 4 3 38 38 H 1.08996 * 110.28709 * 281.85883 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2054 1.0497 0.0000 4 6 3.4758 0.7276 -0.0061 5 6 3.5579 -0.6653 -0.0036 6 6 2.2527 -1.1168 0.0041 7 6 1.8014 -2.5172 0.0098 8 8 1.7824 -3.1543 -1.0264 9 7 1.4091 -3.0942 1.1629 10 6 0.8764 -4.3944 1.1522 11 6 0.6961 -5.2067 0.0180 12 7 0.1770 -6.3449 0.4035 13 7 0.0054 -6.3049 1.7931 14 6 -0.5118 -7.3097 2.5731 15 1 -0.6000 -7.1734 3.6408 16 6 -0.9218 -8.5021 1.9885 17 7 -0.8150 -8.6676 0.6904 18 14 -1.6260 -9.8687 3.0495 19 1 -2.8397 -9.3765 3.7495 20 1 -1.9854 -11.0263 2.1915 21 1 -0.6135 -10.2897 4.0508 22 6 0.4499 -5.0923 2.2351 23 6 5.0043 -1.0940 -0.0098 24 6 5.7986 0.1582 0.4209 25 6 4.8709 1.3125 -0.0156 26 1 -0.3633 0.0931 1.0234 27 1 -0.3634 0.8398 -0.5924 28 1 -0.3633 -0.9329 -0.4310 29 1 1.4946 -2.6119 2.0002 30 1 0.9434 -4.9370 -0.9981 31 1 -1.1015 -9.4996 0.2824 32 1 0.4579 -4.7498 3.2593 33 1 5.1615 -1.9048 0.7016 34 1 5.3022 -1.4051 -1.0111 35 1 5.9481 0.1690 1.5006 36 1 6.7544 0.2083 -0.1008 37 1 4.9387 2.1393 0.6914 38 1 5.1326 1.6495 -1.0185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906460656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:33 Heat of formation + Delta-G solvation = 115.587609 kcal Electronic energy + Delta-G solvation = -23583.170103 eV Core-core repulsion = 20042.864143 eV Total energy + Delta-G solvation = -3540.305960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -43.73093 -41.73873 -40.13395 -37.87229 -36.04912 -35.05408 -33.20825 -32.37903 -31.83928 -29.69268 -28.41690 -27.41310 -26.84804 -24.40884 -22.92525 -22.41747 -21.40863 -21.32709 -20.57351 -19.33942 -18.42179 -17.57385 -17.44687 -16.99984 -16.72668 -16.17037 -15.93464 -15.78673 -15.36941 -15.14754 -14.86433 -14.66991 -13.82912 -13.73971 -13.66376 -13.52945 -13.46340 -13.35918 -12.90857 -12.88769 -12.72203 -12.14307 -12.01828 -11.97358 -11.78373 -11.44721 -11.18062 -11.05668 -10.85498 -10.14637 -10.08165 -9.57135 -8.63420 -8.48888 -6.27440 0.52398 0.90029 1.31557 1.40013 1.54973 1.55533 1.57201 1.81400 2.01131 2.22065 2.42469 2.83105 2.90371 3.07428 3.57928 3.90244 3.94119 4.20326 4.23484 4.25311 4.31919 4.39189 4.48298 4.52448 4.70652 4.86139 4.87731 4.96634 4.98934 5.05444 5.08443 5.22739 5.24205 5.30926 5.41259 5.49189 5.79797 5.91930 6.23070 6.50130 6.68676 7.00893 7.10670 7.41584 7.62347 8.50094 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.031234 B = 0.003055 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.253027 B = 9164.346261 C = 9460.045994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.275 5.275 3 N -0.282 5.282 4 C -0.003 4.003 5 C -0.197 4.197 6 C -0.024 4.024 7 C 0.584 3.416 8 O -0.558 6.558 9 N -0.595 5.595 10 C -0.050 4.050 11 C -0.055 4.055 12 N -0.307 5.307 13 N -0.164 5.164 14 C -0.354 4.354 15 H 0.143 0.857 16 C -0.005 4.005 17 N -0.823 5.823 18 Si 1.019 2.981 19 H -0.253 1.253 20 H -0.279 1.279 21 H -0.253 1.253 22 C -0.074 4.074 23 C -0.052 4.052 24 C -0.102 4.102 25 C -0.023 4.023 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.419 0.581 30 H 0.166 0.834 31 H 0.277 0.723 32 H 0.190 0.810 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.795 17.371 4.821 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.063 5.063 3 N -0.113 5.113 4 C -0.162 4.162 5 C -0.208 4.208 6 C -0.152 4.152 7 C 0.368 3.632 8 O -0.435 6.435 9 N -0.239 5.239 10 C -0.156 4.156 11 C -0.230 4.230 12 N -0.139 5.139 13 N 0.068 4.932 14 C -0.485 4.485 15 H 0.160 0.840 16 C -0.217 4.217 17 N -0.450 5.450 18 Si 0.838 3.162 19 H -0.177 1.177 20 H -0.204 1.204 21 H -0.177 1.177 22 C -0.224 4.224 23 C -0.090 4.090 24 C -0.139 4.139 25 C -0.062 4.062 26 H 0.127 0.873 27 H 0.135 0.865 28 H 0.103 0.897 29 H 0.256 0.744 30 H 0.183 0.817 31 H 0.087 0.913 32 H 0.207 0.793 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.359 16.543 3.533 18.072 hybrid contribution 0.075 -0.521 0.456 0.696 sum 6.434 16.022 3.989 17.720 Atomic orbital electron populations 1.22436 0.71096 1.05790 1.06365 1.45988 1.08205 1.00412 1.51719 1.72606 1.03680 1.12970 1.22045 1.23507 0.93592 0.94319 1.04801 1.21659 0.94541 0.96396 1.08172 1.20305 0.91990 0.87876 1.15003 1.17118 0.77842 0.84857 0.83384 1.90732 1.54467 1.64498 1.33818 1.42303 1.58995 1.13056 1.09569 1.17254 1.16138 0.88609 0.93593 1.24117 1.06517 0.92864 0.99478 1.78183 1.24850 1.20225 0.90679 1.44860 1.34407 1.09480 1.04443 1.20624 1.42079 0.93232 0.92542 0.83971 1.26887 0.95945 1.01508 0.97389 1.70385 1.36671 1.26055 1.11935 0.84647 0.79174 0.75124 0.77251 1.17664 1.20355 1.17708 1.21963 1.12574 0.88822 0.99060 1.20573 0.86343 0.99775 1.02344 1.22405 0.98185 0.90609 1.02743 1.20614 0.82933 0.98753 1.03909 0.87306 0.86462 0.89741 0.74435 0.81742 0.91295 0.79344 0.91067 0.90279 0.89623 0.87169 0.88524 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.68 11.22 127.77 1.43 3.12 16 2 N -0.27 -7.65 3.75 -356.25 -1.34 -8.99 16 3 N -0.28 -7.89 11.91 -47.03 -0.56 -8.45 16 4 C 0.00 -0.09 8.13 43.17 0.35 0.27 16 5 C -0.20 -5.57 7.02 -19.53 -0.14 -5.71 16 6 C -0.02 -0.76 6.71 40.70 0.27 -0.49 16 7 C 0.58 22.02 6.97 86.58 0.60 22.62 16 8 O -0.56 -25.96 14.28 -4.20 -0.06 -26.02 16 9 N -0.60 -21.23 5.46 -307.12 -1.68 -22.91 16 10 C -0.05 -2.27 6.90 37.75 0.26 -2.01 16 11 C -0.05 -2.96 10.85 85.43 0.93 -2.03 16 12 N -0.31 -18.36 10.39 -56.46 -0.59 -18.95 16 13 N -0.16 -8.92 3.74 -190.00 -0.71 -9.63 16 14 C -0.35 -18.35 10.25 84.01 0.86 -17.49 16 15 H 0.14 6.32 7.83 -2.91 -0.02 6.30 16 16 C -0.01 -0.27 5.50 84.95 0.47 0.20 16 17 N -0.82 -46.95 11.81 21.66 0.26 -46.70 16 18 Si 1.02 37.80 29.55 68.60 2.03 39.82 16 19 H -0.25 -8.72 7.11 99.48 0.71 -8.02 16 20 H -0.28 -10.29 7.11 99.48 0.71 -9.59 16 21 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 22 C -0.07 -3.33 11.49 83.38 0.96 -2.37 16 23 C -0.05 -1.12 6.76 30.38 0.21 -0.92 16 24 C -0.10 -1.33 7.07 31.55 0.22 -1.11 16 25 C -0.02 -0.36 6.76 30.50 0.21 -0.15 16 26 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.08 1.95 7.66 -2.39 -0.02 1.93 16 29 H 0.42 11.62 8.81 -92.70 -0.82 10.80 16 30 H 0.17 9.08 5.93 -2.91 -0.02 9.06 16 31 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.19 6.65 8.06 -2.91 -0.02 6.63 16 33 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -78.33 329.56 4.28 -74.04 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.30 Total: 33.86 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 6.63 Total: -6.08 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -4.61 Total: -115.62 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.06 Total: -26.02 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.82 kcal Total: -78.33 4.28 -74.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906460656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.630 kcal (2) G-P(sol) polarization free energy of solvation -78.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.96 seconds