Wall clock time and date at job start Tue Mar 31 2020 03:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46902 * 2 1 4 4 O 1.45195 * 109.47515 * 120.00722 * 2 1 3 5 5 C 1.34230 * 116.99891 * 270.00202 * 4 2 1 6 6 O 1.20819 * 119.99971 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99673 * 180.02562 * 5 4 2 8 8 H 1.08999 * 109.52634 * 304.99858 * 7 5 4 9 9 C 1.53147 * 109.52666 * 65.12493 * 7 5 4 10 10 O 1.43086 * 109.14287 * 175.14158 * 9 7 5 11 11 C 1.43077 * 113.65121 * 302.15448 * 10 9 7 12 12 C 1.53139 * 109.15227 * 57.91808 * 11 10 9 13 13 O 1.43077 * 109.52182 * 184.86692 * 7 5 4 14 14 C 1.50707 * 109.46738 * 240.01038 * 2 1 3 15 15 O 1.21285 * 119.99728 * 248.56525 * 14 2 1 16 16 N 1.34777 * 119.99991 * 68.56543 * 14 2 1 17 17 C 1.46497 * 120.00195 * 4.57953 * 16 14 2 18 18 C 1.46504 * 119.99692 * 184.58468 * 16 14 2 19 19 C 1.50696 * 109.47090 * 89.99853 * 18 16 14 20 20 H 1.08000 * 120.00171 * 359.97438 * 19 18 16 21 21 C 1.37877 * 119.99791 * 179.97438 * 19 18 16 22 22 N 1.31510 * 120.00425 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00067 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46714 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47348 * 119.99626 * 23 21 19 26 26 H 1.48501 * 109.47219 * 240.00152 * 23 21 19 27 27 H 1.08994 * 109.47631 * 67.14417 * 1 2 3 28 28 H 1.09004 * 109.46907 * 187.15044 * 1 2 3 29 29 H 1.09007 * 109.46830 * 307.14026 * 1 2 3 30 30 H 1.08996 * 109.52464 * 295.11818 * 9 7 5 31 31 H 1.09009 * 109.52044 * 55.31401 * 9 7 5 32 32 H 1.09001 * 109.52090 * 298.00893 * 11 10 9 33 33 H 1.08998 * 109.57392 * 177.84934 * 11 10 9 34 34 H 1.09001 * 109.52409 * 184.78686 * 12 11 10 35 35 H 1.08996 * 109.52825 * 64.58584 * 12 11 10 36 36 H 1.09001 * 109.46886 * 86.12166 * 17 16 14 37 37 H 1.08995 * 109.47147 * 206.11857 * 17 16 14 38 38 H 1.08994 * 109.47303 * 326.12439 * 17 16 14 39 39 H 1.09003 * 109.46939 * 209.99855 * 18 16 14 40 40 H 1.08998 * 109.47042 * 329.99941 * 18 16 14 41 41 H 0.96995 * 120.00835 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6846 1.1854 5 6 2.2172 0.0638 2.2810 6 8 1.9983 1.2516 2.2504 7 6 2.7195 -0.5774 3.5490 8 1 2.0581 -1.3971 3.8295 9 6 4.1353 -1.1164 3.3240 10 8 4.6473 -1.6211 4.5611 11 6 4.6751 -0.6486 5.6102 12 6 3.2588 -0.1112 5.8347 13 8 2.7473 0.3950 4.5981 14 6 2.0323 -0.7102 -1.2307 15 8 2.5963 -1.7789 -1.1263 16 7 1.8547 -0.1579 -2.4472 17 6 1.2643 1.1776 -2.5662 18 6 2.2521 -0.8930 -3.6505 19 6 1.0932 -1.7243 -4.1370 20 1 0.1545 -1.7071 -3.6030 21 6 1.2311 -2.5068 -5.2638 22 7 2.3738 -2.5273 -5.9143 23 14 -0.2058 -3.5367 -5.8673 24 1 -1.3698 -3.3382 -4.9667 25 1 -0.5691 -3.1201 -7.2456 26 1 0.1793 -4.9709 -5.8689 27 1 -0.3634 0.3991 -0.9469 28 1 -0.3633 -1.0197 0.1279 29 1 -0.3633 0.6205 0.8193 30 1 4.1069 -1.9180 2.5860 31 1 4.7784 -0.3125 2.9655 32 1 5.3358 0.1716 5.3292 33 1 5.0388 -1.1114 6.5276 34 1 3.2860 0.6903 6.5730 35 1 2.6163 -0.9157 6.1925 36 1 2.0469 1.9305 -2.4731 37 1 0.7798 1.2753 -3.5376 38 1 0.5269 1.3205 -1.7763 39 1 2.5444 -0.1868 -4.4277 40 1 3.0939 -1.5448 -3.4166 41 1 2.4710 -3.0781 -6.7068 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915415039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:49 Heat of formation + Delta-G solvation = -190.826160 kcal Electronic energy + Delta-G solvation = -25302.248284 eV Core-core repulsion = 21376.760804 eV Total energy + Delta-G solvation = -3925.487480 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10941 -39.98862 -38.87684 -36.73933 -36.14669 -34.95596 -32.99731 -32.41207 -31.41317 -28.69277 -27.75095 -26.21653 -25.61945 -24.40058 -23.03809 -22.04163 -20.90075 -18.95184 -18.29568 -17.39396 -17.10751 -16.62401 -16.59438 -16.39887 -15.96516 -15.83787 -15.40060 -15.26166 -14.67370 -14.47748 -13.97778 -13.83081 -13.66817 -13.07822 -12.94228 -12.61154 -12.49430 -12.20466 -12.10571 -11.98609 -11.69064 -11.39850 -11.31183 -11.24287 -11.02478 -10.89923 -10.78984 -10.60707 -10.41815 -10.20110 -9.66817 -9.64639 -8.96811 -8.48392 -7.76012 -6.09064 -4.14467 1.93999 1.96857 3.18390 3.27063 3.27338 3.35343 3.38711 3.44881 3.84846 4.07514 4.39540 4.45228 4.47967 4.56939 4.67709 4.74686 4.81608 4.96537 5.04783 5.08295 5.20317 5.25695 5.32600 5.41664 5.44856 5.62393 5.69603 5.83843 6.03412 6.24100 6.27305 6.41984 6.54123 6.94872 7.36188 7.42767 7.58186 7.86829 8.16303 8.24764 8.79618 8.94890 9.50890 10.99104 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.026551 B = 0.003141 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.313484 B = 8912.084018 C = 9295.455034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.105 0.895 4 O -0.321 6.321 5 C 0.469 3.531 6 O -0.485 6.485 7 C 0.067 3.933 8 H 0.110 0.890 9 C 0.038 3.962 10 O -0.369 6.369 11 C 0.018 3.982 12 C 0.026 3.974 13 O -0.356 6.356 14 C 0.510 3.490 15 O -0.520 6.520 16 N -0.595 5.595 17 C 0.066 3.934 18 C 0.245 3.755 19 C -0.529 4.529 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 7.288 20.717 21.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.014 3.986 3 H 0.123 0.877 4 O -0.236 6.236 5 C 0.309 3.691 6 O -0.371 6.371 7 C 0.008 3.992 8 H 0.128 0.872 9 C -0.039 4.039 10 O -0.287 6.287 11 C -0.059 4.059 12 C -0.050 4.050 13 O -0.275 6.275 14 C 0.294 3.706 15 O -0.396 6.396 16 N -0.328 5.328 17 C -0.077 4.077 18 C 0.127 3.873 19 C -0.568 4.568 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.208 1.208 27 H 0.112 0.888 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.146 0.854 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.726 7.000 20.536 21.708 hybrid contribution -0.906 -0.301 -0.427 1.046 sum -0.180 6.699 20.108 21.196 Atomic orbital electron populations 1.22317 0.92023 1.04327 1.04210 1.22712 0.96107 0.97476 0.82340 0.87738 1.86588 1.76512 1.41192 1.19316 1.22831 0.75279 0.85862 0.85079 1.90671 1.46597 1.16166 1.83689 1.22019 0.99462 0.91830 0.85880 0.87203 1.23197 0.91269 1.01816 0.87608 1.88171 1.84195 1.36502 1.19841 1.23344 0.96815 0.93478 0.92303 1.23391 0.94659 1.00899 0.86098 1.88170 1.84960 1.35124 1.19232 1.19719 0.80961 0.86147 0.83779 1.90702 1.41703 1.21418 1.85749 1.48063 1.60691 1.17268 1.06805 1.21989 0.97915 0.84161 1.03667 1.19381 0.96831 0.91665 0.79432 1.21458 0.98445 1.26336 1.10589 0.92274 1.24940 0.96104 0.96598 0.96426 1.69934 1.24101 1.40209 1.18964 0.86427 0.82293 0.80185 0.78419 1.19765 1.20935 1.20821 0.88777 0.90500 0.91183 0.85386 0.91218 0.91685 0.87226 0.86896 0.91481 0.93359 0.90055 0.91660 0.94590 0.93547 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.14 37.16 0.34 -2.04 16 2 C 0.07 1.18 2.16 -27.88 -0.06 1.12 16 3 H 0.10 1.58 6.73 -51.93 -0.35 1.23 16 4 O -0.32 -5.21 9.43 -45.86 -0.43 -5.64 16 5 C 0.47 6.84 7.26 36.01 0.26 7.10 16 6 O -0.49 -8.05 15.73 -25.45 -0.40 -8.45 16 7 C 0.07 0.79 3.36 -27.81 -0.09 0.69 16 8 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 9 C 0.04 0.42 6.32 37.23 0.24 0.66 16 10 O -0.37 -3.88 10.84 -48.80 -0.53 -4.41 16 11 C 0.02 0.13 7.05 37.23 0.26 0.39 16 12 C 0.03 0.19 7.05 37.23 0.26 0.46 16 13 O -0.36 -4.16 10.03 -62.53 -0.63 -4.79 16 14 C 0.51 10.71 7.03 -10.98 -0.08 10.64 16 15 O -0.52 -13.15 16.08 -13.95 -0.22 -13.37 16 16 N -0.59 -12.43 2.86 -182.96 -0.52 -12.95 16 17 C 0.07 1.02 9.80 59.85 0.59 1.61 16 18 C 0.25 6.31 5.18 -5.19 -0.03 6.29 16 19 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 20 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 23 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H 0.09 1.23 5.46 -51.93 -0.28 0.95 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 38 H 0.07 0.84 4.31 -51.93 -0.22 0.61 16 39 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 40 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -35.14 345.84 -6.39 -41.53 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -5.85 Total: -1.68 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 1.27 Total: 13.53 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.21 Total: -38.41 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -2.21 Total: -36.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.14 -6.39 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915415039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.294 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds