Wall clock time and date at job start Tue Mar 31 2020 03:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48506 * 109.47029 * 240.00047 * 3 2 1 5 5 H 1.48494 * 109.47260 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47356 * 120.00509 * 3 2 1 7 7 C 1.38811 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.90929 * 336.25155 * 10 9 7 12 12 C 1.53962 * 113.66387 * 107.55366 * 10 9 7 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.08996 * 113.68722 * 89.19879 * 13 12 10 15 15 N 1.46499 * 113.61191 * 220.09091 * 13 12 10 16 16 C 1.34783 * 119.99531 * 252.49880 * 15 13 12 17 17 O 1.21688 * 120.00277 * 0.02562 * 16 15 13 18 18 C 1.46814 * 119.99586 * 180.02562 * 16 15 13 19 19 C 1.40408 * 126.54483 * 0.02562 * 18 16 15 20 20 N 1.30973 * 108.76673 * 180.02562 * 19 18 16 21 21 N 1.39710 * 109.48472 * 359.97438 * 20 19 18 22 22 C 1.36362 * 133.18694 * 179.97438 * 21 20 19 23 23 C 1.35291 * 119.80584 * 179.97438 * 22 21 20 24 24 N 1.33248 * 121.27422 * 359.97438 * 23 22 21 25 25 C 1.31409 * 121.07869 * 0.02562 * 24 23 22 26 26 C 1.36815 * 107.97410 * 359.72954 * 21 20 19 27 27 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 28 28 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00151 * 0.02562 * 9 7 2 30 30 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 31 31 H 1.08994 * 113.66446 * 254.45762 * 12 10 9 32 32 H 0.96997 * 120.00777 * 72.49903 * 15 13 12 33 33 H 1.08005 * 125.61852 * 0.02562 * 19 18 16 34 34 H 1.07994 * 120.09764 * 359.97438 * 22 21 20 35 35 H 1.08004 * 119.36743 * 180.02562 * 23 22 21 36 36 H 1.08000 * 120.18381 * 180.02562 * 25 24 23 37 37 H 1.09002 * 113.61445 * 139.98212 * 27 13 12 38 38 H 1.09002 * 113.61408 * 270.79943 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 3.0658 -3.5645 -0.4067 12 6 1.9999 -4.4052 1.3425 13 6 1.8463 -5.6995 0.5264 14 1 2.7953 -6.1679 0.2656 15 7 0.8842 -6.6440 1.0997 16 6 1.3201 -7.7728 1.6933 17 8 2.5126 -8.0072 1.7535 18 6 0.3559 -8.7196 2.2673 19 6 -1.0420 -8.5881 2.2747 20 7 -1.5600 -9.6298 2.8761 21 7 -0.5365 -10.4871 3.2877 22 6 -0.5277 -11.6825 3.9437 23 6 0.6490 -12.2942 4.2110 24 7 1.8096 -11.7516 3.8449 25 6 1.8505 -10.6013 3.2108 26 6 0.6558 -9.9336 2.9086 27 6 1.2597 -4.8285 -0.5971 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 1.1221 -4.1590 1.9401 31 1 2.9281 -4.3554 1.9116 32 1 -0.0664 -6.4570 1.0521 33 1 -1.5984 -7.7636 1.8538 34 1 -1.4573 -12.1397 4.2489 35 1 0.6477 -13.2411 4.7306 36 1 2.7993 -10.1748 2.9204 37 1 1.5905 -5.1205 -1.5938 38 1 0.1794 -4.6993 -0.5306 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022208352.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:59 Heat of formation + Delta-G solvation = 94.737623 kcal Electronic energy + Delta-G solvation = -22910.645175 eV Core-core repulsion = 19369.435091 eV Total energy + Delta-G solvation = -3541.210083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.61590 -40.89609 -39.52164 -38.97103 -35.73846 -34.81808 -34.13599 -32.46898 -31.85756 -30.35331 -26.60906 -26.42964 -25.92322 -25.30290 -23.82228 -23.14085 -21.44120 -20.75675 -19.58541 -19.09350 -18.48537 -17.83454 -17.41767 -17.26233 -16.65006 -16.21796 -16.12126 -16.03820 -15.62206 -15.29283 -14.93469 -14.50802 -14.37658 -14.08255 -14.03503 -13.57175 -13.24399 -13.12399 -12.77808 -12.45800 -12.25661 -12.13639 -12.04134 -11.97614 -11.69851 -11.46520 -11.11625 -11.01117 -10.93678 -10.81222 -9.96803 -9.02903 -8.93704 -7.92951 -5.20366 -0.74442 -0.31988 0.80346 0.93644 1.49627 1.51822 1.57741 2.10284 2.23226 2.47330 2.59249 2.93796 3.10928 3.22355 3.38883 3.65104 3.74861 3.82446 3.91848 4.00109 4.03492 4.23535 4.29839 4.36935 4.37920 4.49364 4.81508 4.94958 4.96318 5.01647 5.07137 5.20010 5.21903 5.34327 5.43557 5.53973 5.74079 6.08945 6.29745 6.48028 6.65041 7.29228 7.36418 8.12999 8.36138 9.29959 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.036786 B = 0.002464 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.976801 B =11359.950430 C =11724.156998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.970 3.030 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.723 5.723 10 C 0.149 3.851 11 H 0.079 0.921 12 C -0.171 4.171 13 C 0.140 3.860 14 H 0.109 0.891 15 N -0.699 5.699 16 C 0.596 3.404 17 O -0.585 6.585 18 C -0.299 4.299 19 C 0.127 3.873 20 N -0.322 5.322 21 N -0.252 5.252 22 C 0.069 3.931 23 C 0.031 3.969 24 N -0.451 5.451 25 C 0.146 3.854 26 C 0.083 3.917 27 C -0.139 4.139 28 H 0.251 0.749 29 H 0.376 0.624 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.412 0.588 33 H 0.236 0.764 34 H 0.222 0.778 35 H 0.230 0.770 36 H 0.188 0.812 37 H 0.082 0.918 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 -26.954 6.772 27.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.093 0.907 9 N -0.361 5.361 10 C 0.038 3.962 11 H 0.097 0.903 12 C -0.213 4.213 13 C 0.035 3.965 14 H 0.127 0.873 15 N -0.349 5.349 16 C 0.385 3.615 17 O -0.467 6.467 18 C -0.317 4.317 19 C -0.052 4.052 20 N -0.145 5.145 21 N -0.019 5.019 22 C -0.060 4.060 23 C -0.112 4.112 24 N -0.163 5.163 25 C -0.032 4.032 26 C -0.041 4.041 27 C -0.179 4.179 28 H 0.060 0.940 29 H 0.208 0.792 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.248 0.752 33 H 0.252 0.748 34 H 0.238 0.762 35 H 0.246 0.754 36 H 0.205 0.795 37 H 0.101 0.899 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.746 -28.026 7.404 29.117 hybrid contribution -0.482 2.172 -0.380 2.257 sum -3.228 -25.854 7.024 26.985 Atomic orbital electron populations 1.69788 1.06465 1.26076 1.59553 1.25520 0.96382 1.00963 1.03859 0.85264 0.77241 0.79453 0.78129 1.20358 1.22264 1.20681 1.19662 0.91553 0.85439 1.40961 0.90652 1.42488 1.05392 1.00757 1.87432 1.21705 0.95768 0.84118 0.94566 0.90338 1.24206 1.01210 0.96436 0.99430 1.22137 0.93567 0.86671 0.94130 0.87260 1.45594 1.10874 1.20370 1.58028 1.17113 0.86861 0.80603 0.76891 1.90739 1.17793 1.77235 1.60887 1.19729 0.94250 0.99002 1.18682 1.24742 0.92083 0.96132 0.92217 1.77678 1.08378 1.04236 1.24255 1.46547 1.05691 1.15445 1.34195 1.23515 1.04822 0.82898 0.94792 1.23250 0.84642 1.02668 1.00591 1.68287 1.30485 1.09339 1.08145 1.23242 0.96739 0.89868 0.93338 1.20533 0.89022 0.95439 0.99073 1.23674 1.01108 0.94792 0.98318 0.94047 0.79164 0.91065 0.92858 0.75161 0.74812 0.76168 0.75361 0.79511 0.89906 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.26 13.06 21.65 0.28 -57.98 16 2 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 3 Si 0.97 45.81 29.55 68.60 2.03 47.83 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.24 -13.36 9.97 84.03 0.84 -12.52 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.72 -35.22 5.40 -320.15 -1.73 -36.95 16 10 C 0.15 5.59 4.49 45.58 0.20 5.79 16 11 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 12 C -0.17 -5.77 7.68 31.18 0.24 -5.53 16 13 C 0.14 3.90 4.24 45.52 0.19 4.09 16 14 H 0.11 3.18 7.46 -2.39 -0.02 3.16 16 15 N -0.70 -16.50 5.35 -443.86 -2.37 -18.87 16 16 C 0.60 15.97 7.79 86.49 0.67 16.64 16 17 O -0.58 -19.39 15.41 -4.31 -0.07 -19.45 16 18 C -0.30 -6.81 6.16 -19.95 -0.12 -6.93 16 19 C 0.13 2.28 11.44 85.35 0.98 3.25 16 20 N -0.32 -6.40 12.60 -56.59 -0.71 -7.11 16 21 N -0.25 -4.69 3.91 -187.15 -0.73 -5.42 16 22 C 0.07 0.71 11.24 83.31 0.94 1.65 16 23 C 0.03 0.30 11.07 83.80 0.93 1.23 16 24 N -0.45 -7.84 10.44 -195.85 -2.05 -9.89 16 25 C 0.15 3.05 10.98 85.22 0.94 3.99 16 26 C 0.08 1.84 6.77 39.39 0.27 2.11 16 27 C -0.14 -4.00 7.58 31.12 0.24 -3.76 16 28 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 29 H 0.38 19.39 7.92 -92.71 -0.73 18.66 16 30 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.41 7.35 7.65 -92.71 -0.71 6.64 16 33 H 0.24 2.32 7.46 -2.91 -0.02 2.30 16 34 H 0.22 0.41 8.06 -2.91 -0.02 0.39 16 35 H 0.23 0.07 8.06 -2.91 -0.02 0.05 16 36 H 0.19 4.11 7.20 -2.91 -0.02 4.09 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.09 2.48 8.09 -2.39 -0.02 2.46 16 Total: -1.00 -75.16 332.53 1.10 -74.06 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: -0.32 Total: 27.57 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.77 Total: 6.21 kcal Atomic # 7 Polarization: -128.91 SS G_CDS: -7.31 Total: -136.22 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.07 Total: -19.45 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -75.16 1.10 -74.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022208352.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.793 kcal (2) G-P(sol) polarization free energy of solvation -75.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds