Wall clock time and date at job start Tue Mar 31 2020 04:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36258 * 126.29901 * 2 1 4 4 N 1.30127 * 110.04796 * 179.97438 * 3 2 1 5 5 C 1.35699 * 109.50208 * 0.02562 * 4 3 2 6 6 C 1.39484 * 134.42550 * 179.97438 * 5 4 3 7 7 N 1.31768 * 120.63168 * 180.02562 * 6 5 4 8 8 C 1.31943 * 122.59343 * 0.02771 * 7 6 5 9 9 C 1.39369 * 121.02510 * 0.20036 * 8 7 6 10 10 C 1.47535 * 120.75818 * 179.67263 * 9 8 7 11 11 O 1.21586 * 120.00318 * 171.87605 * 10 9 8 12 12 N 1.34782 * 119.99666 * 351.87503 * 10 9 8 13 13 C 1.46505 * 119.99831 * 179.97438 * 12 10 9 14 14 C 1.53939 * 113.74081 * 253.74143 * 13 12 10 15 15 N 1.47810 * 86.03940 * 222.08415 * 14 13 12 16 16 C 1.36937 * 134.46379 * 204.64728 * 15 14 13 17 17 H 1.07997 * 120.00498 * 179.86409 * 16 15 14 18 18 C 1.38823 * 119.99499 * 359.86592 * 16 15 14 19 19 N 1.31619 * 120.00097 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99772 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47338 * 89.99759 * 20 18 16 22 22 H 1.48503 * 109.46886 * 209.99943 * 20 18 16 23 23 H 1.48500 * 109.46791 * 329.99659 * 20 18 16 24 24 C 1.47581 * 91.04698 * 24.54910 * 15 14 13 25 25 C 1.36927 * 126.29834 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.46980 * 251.53426 * 1 2 3 27 27 H 1.08995 * 109.47056 * 11.53482 * 1 2 3 28 28 H 1.08994 * 109.46893 * 131.53835 * 1 2 3 29 29 H 1.07991 * 124.97551 * 359.96513 * 3 2 1 30 30 H 1.07999 * 119.68635 * 0.04210 * 6 5 4 31 31 H 1.08009 * 119.48617 * 180.02562 * 8 7 6 32 32 H 0.97000 * 120.00310 * 359.97438 * 12 10 9 33 33 H 1.09000 * 112.94240 * 25.33573 * 13 12 10 34 34 H 1.08998 * 113.77605 * 336.35371 * 14 13 12 35 35 H 1.09002 * 113.77204 * 107.74759 * 14 13 12 36 36 H 0.96998 * 120.00047 * 180.02562 * 19 18 16 37 37 H 1.09006 * 113.77180 * 221.15197 * 24 15 14 38 38 H 1.09004 * 113.76931 * 89.75506 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2717 1.0982 0.0000 4 7 3.5210 0.7340 0.0005 5 6 3.5979 -0.6208 0.0004 6 6 4.6478 -1.5391 0.0003 7 7 4.4067 -2.8345 -0.0004 8 6 3.1838 -3.3299 -0.0016 9 6 2.0696 -2.4926 -0.0064 10 6 0.7048 -3.0529 -0.0149 11 8 -0.2543 -2.3197 0.1298 12 7 0.5212 -4.3775 -0.1832 13 6 -0.8340 -4.9339 -0.1911 14 6 -1.1929 -5.7098 1.0891 15 7 -1.8189 -6.7018 0.1897 16 6 -2.8120 -7.6337 0.3324 17 1 -3.0944 -8.2545 -0.5049 18 6 -3.4558 -7.7804 1.5536 19 7 -3.1114 -7.0241 2.5742 20 14 -4.8101 -9.0521 1.7485 21 1 -4.2188 -10.3418 2.1867 22 1 -5.7860 -8.5841 2.7653 23 1 -5.5023 -9.2413 0.4484 24 6 -0.9458 -6.2831 -0.9240 25 6 2.2756 -1.1036 0.0005 26 1 -0.3633 -0.3255 0.9748 27 1 -0.3633 1.0069 -0.2055 28 1 -0.3633 -0.6814 -0.7692 29 1 1.9250 2.1209 -0.0005 30 1 5.6681 -1.1850 0.0011 31 1 3.0440 -4.4009 -0.0017 32 1 1.2863 -4.9624 -0.2990 33 1 -1.5897 -4.2078 -0.4907 34 1 -0.3265 -6.0914 1.6292 35 1 -1.9022 -5.1902 1.7335 36 1 -3.5610 -7.1268 3.4275 37 1 -1.4580 -6.2203 -1.8842 38 1 -0.0064 -6.8335 -0.9768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030470052.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:28 Heat of formation + Delta-G solvation = 124.685763 kcal Electronic energy + Delta-G solvation = -23787.122540 eV Core-core repulsion = 20247.211106 eV Total energy + Delta-G solvation = -3539.911434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.66434 -39.78755 -38.59077 -37.61382 -34.32709 -33.79910 -32.19850 -31.48094 -30.12032 -27.62262 -27.22660 -25.02847 -24.90359 -23.30515 -23.08909 -21.77337 -20.30601 -19.61796 -17.93773 -17.77259 -17.25965 -16.85253 -16.30051 -15.85009 -15.44094 -15.07058 -14.96789 -14.58709 -14.47374 -13.88049 -13.81486 -13.72094 -12.88584 -12.83006 -12.53791 -12.31797 -11.89918 -11.53614 -11.50366 -10.94764 -10.85084 -10.80351 -10.63670 -10.52848 -10.29156 -10.07445 -9.62192 -9.39404 -9.13687 -8.87575 -8.64182 -8.46629 -6.99643 -5.83900 -3.18208 0.20720 1.17448 2.25392 2.38297 3.01241 3.23625 3.35977 3.40833 3.42578 3.73638 3.85197 4.12885 4.21281 4.40050 4.57908 4.70612 4.76896 4.90374 5.05714 5.16777 5.37986 5.40524 5.40658 5.47295 5.72196 5.84187 5.94115 6.09776 6.11145 6.20324 6.31488 6.45402 6.61943 6.77038 7.15191 7.24846 7.39227 7.46646 7.67221 7.72969 7.89327 8.30581 8.96061 9.62562 10.47733 11.32740 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.029250 B = 0.003175 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.045226 B = 8816.438869 C = 9356.020866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.472 5.472 3 C 0.259 3.741 4 N -0.482 5.482 5 C -0.019 4.019 6 C 0.195 3.805 7 N -0.490 5.490 8 C 0.134 3.866 9 C -0.170 4.170 10 C 0.561 3.439 11 O -0.546 6.546 12 N -0.703 5.703 13 C 0.092 3.908 14 C 0.155 3.845 15 N -0.606 5.606 16 C -0.227 4.227 17 H 0.082 0.918 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.112 3.888 25 C 0.124 3.876 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.220 0.780 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.397 0.603 33 H 0.112 0.888 34 H 0.030 0.970 35 H 0.077 0.923 36 H 0.255 0.745 37 H 0.050 0.950 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.020 14.565 -6.399 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.158 5.158 3 C -0.028 4.028 4 N -0.201 5.201 5 C -0.141 4.141 6 C 0.029 3.971 7 N -0.199 5.199 8 C -0.018 4.018 9 C -0.179 4.179 10 C 0.348 3.652 11 O -0.426 6.426 12 N -0.353 5.353 13 C -0.013 4.013 14 C 0.028 3.972 15 N -0.333 5.333 16 C -0.355 4.355 17 H 0.100 0.900 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.745 3.255 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.205 1.205 24 C -0.014 4.014 25 C 0.003 3.997 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.124 0.876 29 H 0.236 0.764 30 H 0.186 0.814 31 H 0.184 0.816 32 H 0.231 0.769 33 H 0.130 0.870 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.214 14.772 -6.122 20.122 hybrid contribution -1.780 -0.952 0.261 2.035 sum 10.434 13.820 -5.861 18.282 Atomic orbital electron populations 1.22491 0.73558 1.02677 1.06643 1.45324 1.08907 1.04693 1.56919 1.25601 0.85015 0.93659 0.98476 1.70463 1.18411 1.09893 1.21359 1.20166 0.92849 0.91658 1.09382 1.22292 0.98160 0.86265 0.90409 1.67692 1.23315 1.13847 1.15077 1.22774 0.86120 0.99817 0.93057 1.20049 0.95811 0.90266 1.11759 1.17979 0.87838 0.82735 0.76655 1.90754 1.42763 1.58071 1.51017 1.46130 1.10439 1.06964 1.71735 1.23998 0.81799 0.94501 1.00972 1.22713 0.95186 0.87436 0.91841 1.45715 1.37552 1.42369 1.07650 1.18985 1.08496 1.11375 0.96598 0.89993 1.24825 1.00031 0.99739 0.95638 1.69822 1.43824 1.41083 1.01733 0.86086 0.81220 0.80709 0.77520 1.21511 1.21549 1.20517 1.22876 0.94229 0.90813 0.93526 1.18706 0.91478 0.88791 1.00722 0.89392 0.90731 0.87628 0.76409 0.81409 0.81634 0.76854 0.86992 0.95249 0.90445 0.93489 0.93134 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 9.18 59.85 0.55 1.44 16 2 N -0.47 -5.41 3.18 -122.88 -0.39 -5.80 16 3 C 0.26 2.47 12.48 -89.56 -1.12 1.35 16 4 N -0.48 -5.80 11.28 -12.01 -0.14 -5.93 16 5 C -0.02 -0.25 7.27 -84.74 -0.62 -0.86 16 6 C 0.19 2.21 11.25 -17.12 -0.19 2.01 16 7 N -0.49 -5.87 10.30 -12.64 -0.13 -6.00 16 8 C 0.13 1.56 10.68 -17.08 -0.18 1.38 16 9 C -0.17 -2.26 5.89 -104.86 -0.62 -2.88 16 10 C 0.56 8.38 7.75 -12.47 -0.10 8.29 16 11 O -0.55 -9.18 10.84 5.29 0.06 -9.12 16 12 N -0.70 -10.14 5.33 -56.39 -0.30 -10.44 16 13 C 0.09 1.67 4.40 -70.15 -0.31 1.36 16 14 C 0.15 3.56 7.33 -2.84 -0.02 3.54 16 15 N -0.61 -15.07 3.70 -177.89 -0.66 -15.73 16 16 C -0.23 -6.24 10.70 -15.06 -0.16 -6.41 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 19 N -0.92 -26.99 11.39 55.49 0.63 -26.36 16 20 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 C 0.11 2.14 8.69 -2.97 -0.03 2.11 16 25 C 0.12 1.66 6.81 -83.81 -0.57 1.09 16 26 H 0.09 1.05 7.34 -51.93 -0.38 0.67 16 27 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.11 1.29 6.10 -51.93 -0.32 0.98 16 29 H 0.22 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.17 1.50 6.50 -52.48 -0.34 1.16 16 32 H 0.40 4.62 6.85 -40.82 -0.28 4.34 16 33 H 0.11 2.18 7.51 -51.93 -0.39 1.79 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 2.04 7.17 -51.93 -0.37 1.66 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.04 0.63 8.11 -51.93 -0.42 0.21 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -34.04 321.02 -8.73 -42.77 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.16 Total: 2.80 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: -3.46 Total: 12.18 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -0.98 Total: -70.26 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.06 Total: -9.12 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.04 -8.73 -42.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030470052.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.454 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds