Wall clock time and date at job start Tue Mar 31 2020 03:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30898 * 119.96497 * 2 1 4 4 C 1.34163 * 121.16959 * 179.97438 * 3 2 1 5 5 C 1.38702 * 132.24545 * 179.97438 * 4 3 2 6 6 C 1.38845 * 107.67326 * 180.02562 * 5 4 3 7 7 N 1.31300 * 108.98805 * 359.97438 * 6 5 4 8 8 N 1.37266 * 120.90148 * 0.02562 * 4 3 2 9 9 C 1.36072 * 119.97467 * 359.76118 * 8 4 3 10 10 C 1.38069 * 118.88695 * 0.48520 * 9 8 4 11 11 C 1.47605 * 120.50074 * 179.77492 * 10 9 8 12 12 O 1.21587 * 120.00010 * 173.51058 * 11 10 9 13 13 N 1.34776 * 120.00154 * 353.50866 * 11 10 9 14 14 C 1.46495 * 120.00149 * 179.97438 * 13 11 10 15 15 C 1.53496 * 114.20949 * 205.00101 * 14 13 11 16 16 N 1.47068 * 87.98629 * 220.14723 * 15 14 13 17 17 C 1.36928 * 136.05686 * 207.07974 * 16 15 14 18 18 H 1.08002 * 120.00236 * 6.64409 * 17 16 15 19 19 C 1.38810 * 120.00380 * 186.63848 * 17 16 15 20 20 N 1.31621 * 119.99710 * 6.43645 * 19 17 16 21 21 Si 1.86791 * 120.00533 * 186.43547 * 19 17 16 22 22 H 1.48501 * 109.47256 * 265.01530 * 21 19 17 23 23 H 1.48506 * 109.47264 * 25.01386 * 21 19 17 24 24 H 1.48500 * 109.47397 * 145.01245 * 21 19 17 25 25 C 1.47071 * 87.88248 * 27.34042 * 16 15 14 26 26 H 1.08994 * 109.47239 * 263.27218 * 1 2 3 27 27 H 1.09003 * 109.46676 * 23.27447 * 1 2 3 28 28 H 1.08999 * 109.46685 * 143.26941 * 1 2 3 29 29 H 1.07994 * 126.16659 * 0.02954 * 5 4 3 30 30 H 1.07999 * 125.50693 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.55647 * 180.23573 * 9 8 4 32 32 H 0.96998 * 119.99442 * 359.97438 * 13 11 10 33 33 H 1.09006 * 113.28317 * 338.07132 * 14 13 11 34 34 H 1.08997 * 113.46865 * 105.36577 * 15 14 13 35 35 H 1.09002 * 113.46671 * 334.92844 * 15 14 13 36 36 H 0.97000 * 119.99964 * 180.02562 * 20 19 17 37 37 H 1.09002 * 113.46701 * 87.44045 * 25 16 15 38 38 H 1.08998 * 113.46577 * 217.87240 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1340 0.0000 4 6 3.5021 1.1622 0.0005 5 6 4.4128 2.2084 0.0002 6 6 5.6874 1.6577 0.0005 7 7 5.5871 0.3485 0.0015 8 7 4.2316 -0.0005 0.0005 9 6 3.5945 -1.2029 0.0049 10 6 2.2140 -1.2262 -0.0009 11 6 1.4865 -2.5105 -0.0014 12 8 0.2760 -2.5235 0.1125 13 7 2.1639 -3.6687 -0.1281 14 6 1.4419 -4.9434 -0.1280 15 6 2.2850 -6.1444 0.3224 16 7 1.6373 -6.9308 -0.7382 17 6 1.3428 -8.2518 -0.9460 18 1 1.5131 -8.9731 -0.1604 19 6 0.8252 -8.6640 -2.1662 20 7 0.7358 -7.8113 -3.1649 21 14 0.2557 -10.4287 -2.3911 22 1 1.3539 -11.2311 -2.9873 23 1 -0.1156 -11.0010 -1.0720 24 1 -0.9239 -10.4572 -3.2927 25 6 1.4510 -5.6749 -1.4804 26 1 -0.3633 -0.1204 1.0205 27 1 -0.3633 0.9441 -0.4061 28 1 -0.3633 -0.8236 -0.6146 29 1 4.1737 3.2615 -0.0002 30 1 6.6119 2.2159 0.0007 31 1 4.1592 -2.1234 0.0088 32 1 3.1295 -3.6583 -0.2194 33 1 0.4614 -4.8832 0.3446 34 1 2.0450 -6.4906 1.3276 35 1 3.3551 -6.0058 0.1680 36 1 0.3737 -8.0993 -4.0175 37 1 2.3012 -5.4125 -2.1100 38 1 0.5004 -5.6212 -2.0111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031168450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:00 Heat of formation + Delta-G solvation = 152.844160 kcal Electronic energy + Delta-G solvation = -23428.000051 eV Core-core repulsion = 19889.309656 eV Total energy + Delta-G solvation = -3538.690395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.63133 -40.11257 -38.46574 -37.49176 -34.84986 -33.62498 -32.28498 -31.93323 -29.89560 -28.26551 -27.51829 -25.11824 -24.75184 -23.58819 -22.65020 -21.71836 -20.94781 -19.92607 -18.84897 -17.76347 -16.86173 -16.61011 -16.46186 -15.82518 -15.50401 -15.10774 -14.74696 -14.46067 -14.33401 -13.93825 -13.69816 -13.63757 -13.08220 -12.81213 -12.48667 -11.99755 -11.95428 -11.67065 -11.63978 -11.57062 -11.47538 -11.03442 -10.84485 -10.56118 -10.32625 -10.17500 -9.74739 -9.68626 -9.55301 -8.88347 -8.62940 -8.22898 -7.03478 -5.88788 -3.21762 0.03255 0.38404 1.64630 2.17040 2.72626 3.00887 3.29479 3.34371 3.39621 3.41993 3.52610 3.74720 3.83874 4.36069 4.47564 4.61278 4.85378 4.91591 5.09402 5.13124 5.32650 5.41477 5.44010 5.54321 5.60480 5.68378 5.84819 5.95398 6.05855 6.13784 6.19347 6.28423 6.39757 6.55302 7.04831 7.06618 7.16857 7.35201 7.39925 7.55444 7.85069 8.16227 8.92080 9.58739 10.48786 11.29494 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.028299 B = 0.002953 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.192073 B = 9479.487301 C =10029.176634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.258 3.742 3 N -0.475 5.475 4 C 0.270 3.730 5 C -0.270 4.270 6 C 0.099 3.901 7 N -0.314 5.314 8 N -0.318 5.318 9 C 0.210 3.790 10 C -0.229 4.229 11 C 0.575 3.425 12 O -0.520 6.520 13 N -0.705 5.705 14 C 0.086 3.914 15 C 0.109 3.891 16 N -0.602 5.602 17 C -0.224 4.224 18 H 0.084 0.916 19 C -0.004 4.004 20 N -0.916 5.916 21 Si 0.916 3.084 22 H -0.288 1.288 23 H -0.278 1.278 24 H -0.288 1.288 25 C 0.152 3.848 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.164 0.836 30 H 0.201 0.799 31 H 0.185 0.815 32 H 0.394 0.606 33 H 0.122 0.878 34 H 0.048 0.952 35 H 0.033 0.967 36 H 0.256 0.744 37 H 0.031 0.969 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.586 18.583 7.059 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.094 3.906 3 N -0.188 5.188 4 C 0.044 3.956 5 C -0.301 4.301 6 C -0.081 4.081 7 N -0.137 5.137 8 N -0.089 5.089 9 C 0.072 3.928 10 C -0.240 4.240 11 C 0.359 3.641 12 O -0.397 6.397 13 N -0.355 5.355 14 C -0.019 4.019 15 C -0.018 4.018 16 N -0.327 5.327 17 C -0.351 4.351 18 H 0.102 0.898 19 C -0.202 4.202 20 N -0.562 5.562 21 Si 0.745 3.255 22 H -0.215 1.215 23 H -0.204 1.204 24 H -0.215 1.215 25 C 0.025 3.975 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.132 0.868 29 H 0.181 0.819 30 H 0.217 0.783 31 H 0.202 0.798 32 H 0.228 0.772 33 H 0.140 0.860 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.075 18.101 6.944 20.317 hybrid contribution 0.619 -0.918 -0.385 1.173 sum 6.694 17.183 6.559 19.572 Atomic orbital electron populations 1.21149 0.85599 1.04835 1.05186 1.22054 0.98345 0.85454 0.84769 1.68130 1.03638 1.28146 1.18882 1.20904 0.88302 0.86998 0.99408 1.21009 0.89571 0.98811 1.20688 1.23954 0.99065 0.90970 0.94069 1.77949 0.88894 1.15577 1.31256 1.47120 1.07869 1.06059 1.47813 1.22532 0.91909 0.88767 0.89593 1.20804 0.91604 0.97532 1.14039 1.17337 0.87071 0.82353 0.77296 1.90777 1.12793 1.86365 1.49723 1.45982 1.10466 1.06235 1.72817 1.23836 0.97235 0.78839 1.01961 1.22719 0.95154 0.89430 0.94490 1.45344 1.65879 1.02606 1.18915 1.18903 1.37080 0.81166 0.97949 0.89797 1.24871 1.01688 0.98309 0.95289 1.69852 1.49781 1.34033 1.02497 0.86057 0.78128 0.83549 0.77735 1.21517 1.20364 1.21452 1.22461 1.00401 0.83183 0.91496 0.88772 0.90472 0.86842 0.81858 0.78269 0.79821 0.77178 0.86025 0.93360 0.94921 0.93428 0.95102 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 8.92 36.00 0.32 -0.87 16 2 C 0.26 3.17 6.87 -81.73 -0.56 2.60 16 3 N -0.48 -6.16 10.37 -8.17 -0.08 -6.25 16 4 C 0.27 3.41 7.91 -155.32 -1.23 2.18 16 5 C -0.27 -2.76 10.91 -39.19 -0.43 -3.19 16 6 C 0.10 0.89 11.95 -17.55 -0.21 0.68 16 7 N -0.31 -3.67 12.65 30.49 0.39 -3.29 16 8 N -0.32 -3.88 3.88 -11.68 -0.05 -3.92 16 9 C 0.21 2.22 10.82 -15.73 -0.17 2.05 16 10 C -0.23 -2.71 5.88 -104.88 -0.62 -3.33 16 11 C 0.57 7.82 7.71 -12.44 -0.10 7.72 16 12 O -0.52 -8.41 13.04 5.29 0.07 -8.34 16 13 N -0.70 -9.37 5.34 -54.51 -0.29 -9.67 16 14 C 0.09 1.50 4.62 -67.68 -0.31 1.19 16 15 C 0.11 2.04 8.44 -8.51 -0.07 1.97 16 16 N -0.60 -14.78 3.76 -184.62 -0.69 -15.48 16 17 C -0.22 -6.10 10.73 -15.06 -0.16 -6.26 16 18 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 19 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 20 N -0.92 -26.74 11.81 55.49 0.66 -26.09 16 21 Si 0.92 21.64 29.56 -169.99 -5.02 16.61 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.15 3.39 7.05 -8.37 -0.06 3.33 16 26 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.11 1.37 5.93 -51.93 -0.31 1.07 16 29 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.18 1.37 6.50 -52.49 -0.34 1.03 16 32 H 0.39 4.09 6.87 -40.82 -0.28 3.81 16 33 H 0.12 2.27 7.45 -51.93 -0.39 1.88 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.56 8.13 -51.93 -0.42 0.14 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.69 7.58 -51.93 -0.39 1.30 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -33.62 326.34 -8.02 -41.64 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.21 Total: 1.98 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: -3.69 Total: 7.88 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -0.07 Total: -64.69 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.07 Total: -8.34 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.62 -8.02 -41.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031168450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.485 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds