Wall clock time and date at job start Tue Mar 31 2020 03:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30898 * 119.96497 * 2 1 4 4 C 1.34163 * 121.16959 * 179.97438 * 3 2 1 5 5 C 1.38702 * 132.24545 * 179.97438 * 4 3 2 6 6 C 1.38845 * 107.67326 * 180.02562 * 5 4 3 7 7 N 1.31300 * 108.98805 * 359.97438 * 6 5 4 8 8 N 1.37266 * 120.90148 * 0.02562 * 4 3 2 9 9 C 1.36072 * 119.97467 * 359.76118 * 8 4 3 10 10 C 1.38069 * 118.88695 * 0.48520 * 9 8 4 11 11 C 1.47605 * 120.50074 * 179.77492 * 10 9 8 12 12 O 1.21587 * 120.00010 * 173.51058 * 11 10 9 13 13 N 1.34776 * 120.00154 * 353.50866 * 11 10 9 14 14 C 1.46495 * 120.00149 * 179.97438 * 13 11 10 15 15 C 1.53496 * 114.20949 * 205.00101 * 14 13 11 16 16 N 1.47068 * 87.98629 * 220.14723 * 15 14 13 17 17 C 1.36928 * 136.05686 * 207.07974 * 16 15 14 18 18 H 1.08002 * 120.00236 * 6.64409 * 17 16 15 19 19 C 1.38810 * 120.00380 * 186.63848 * 17 16 15 20 20 N 1.31621 * 119.99710 * 6.43645 * 19 17 16 21 21 Si 1.86791 * 120.00533 * 186.43547 * 19 17 16 22 22 H 1.48501 * 109.47256 * 265.01530 * 21 19 17 23 23 H 1.48506 * 109.47264 * 25.01386 * 21 19 17 24 24 H 1.48500 * 109.47397 * 145.01245 * 21 19 17 25 25 C 1.47071 * 87.88248 * 27.34042 * 16 15 14 26 26 H 1.08994 * 109.47239 * 263.27218 * 1 2 3 27 27 H 1.09003 * 109.46676 * 23.27447 * 1 2 3 28 28 H 1.08999 * 109.46685 * 143.26941 * 1 2 3 29 29 H 1.07994 * 126.16659 * 0.02954 * 5 4 3 30 30 H 1.07999 * 125.50693 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.55647 * 180.23573 * 9 8 4 32 32 H 0.96998 * 119.99442 * 359.97438 * 13 11 10 33 33 H 1.09006 * 113.28317 * 338.07132 * 14 13 11 34 34 H 1.08997 * 113.46865 * 105.36577 * 15 14 13 35 35 H 1.09002 * 113.46671 * 334.92844 * 15 14 13 36 36 H 0.97000 * 119.99964 * 180.02562 * 20 19 17 37 37 H 1.09002 * 113.46701 * 87.44045 * 25 16 15 38 38 H 1.08998 * 113.46577 * 217.87240 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1340 0.0000 4 6 3.5021 1.1622 0.0005 5 6 4.4128 2.2084 0.0002 6 6 5.6874 1.6577 0.0005 7 7 5.5871 0.3485 0.0015 8 7 4.2316 -0.0005 0.0005 9 6 3.5945 -1.2029 0.0049 10 6 2.2140 -1.2262 -0.0009 11 6 1.4865 -2.5105 -0.0014 12 8 0.2760 -2.5235 0.1125 13 7 2.1639 -3.6687 -0.1281 14 6 1.4419 -4.9434 -0.1280 15 6 2.2850 -6.1444 0.3224 16 7 1.6373 -6.9308 -0.7382 17 6 1.3428 -8.2518 -0.9460 18 1 1.5131 -8.9731 -0.1604 19 6 0.8252 -8.6640 -2.1662 20 7 0.7358 -7.8113 -3.1649 21 14 0.2557 -10.4287 -2.3911 22 1 1.3539 -11.2311 -2.9873 23 1 -0.1156 -11.0010 -1.0720 24 1 -0.9239 -10.4572 -3.2927 25 6 1.4510 -5.6749 -1.4804 26 1 -0.3633 -0.1204 1.0205 27 1 -0.3633 0.9441 -0.4061 28 1 -0.3633 -0.8236 -0.6146 29 1 4.1737 3.2615 -0.0002 30 1 6.6119 2.2159 0.0007 31 1 4.1592 -2.1234 0.0088 32 1 3.1295 -3.6583 -0.2194 33 1 0.4614 -4.8832 0.3446 34 1 2.0450 -6.4906 1.3276 35 1 3.3551 -6.0058 0.1680 36 1 0.3737 -8.0993 -4.0175 37 1 2.3012 -5.4125 -2.1100 38 1 0.5004 -5.6212 -2.0111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031168450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:59 Heat of formation + Delta-G solvation = 129.587917 kcal Electronic energy + Delta-G solvation = -23429.008517 eV Core-core repulsion = 19889.309656 eV Total energy + Delta-G solvation = -3539.698861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.47085 -41.28593 -39.77707 -38.65463 -35.85422 -34.95221 -33.84374 -33.06660 -30.87667 -29.38700 -29.02882 -26.42607 -26.13575 -25.05362 -23.69245 -22.56050 -22.07361 -21.48104 -19.76327 -18.86936 -18.70910 -17.56586 -17.34837 -17.16737 -16.89752 -16.34512 -16.00609 -15.73538 -15.49209 -15.14751 -14.74487 -14.53121 -14.46305 -13.93108 -13.88033 -13.31659 -13.23243 -13.10446 -12.88061 -12.81694 -12.66356 -12.44840 -12.42256 -12.25853 -12.00709 -11.40263 -11.27548 -10.87982 -10.78793 -10.61429 -9.98911 -9.06455 -8.98972 -7.95916 -5.29008 -0.82397 -0.49985 0.82803 1.34634 1.46363 1.48447 1.57853 1.78058 1.87738 2.33546 2.47900 2.67925 2.94943 3.03770 3.28109 3.39126 3.59099 3.77020 3.78468 4.07288 4.12494 4.31727 4.34038 4.49990 4.63853 4.73196 4.76449 4.77495 4.90547 4.91921 5.03939 5.14007 5.18760 5.38289 5.44658 5.45483 5.65032 5.86623 6.25564 6.38992 6.50870 6.86118 7.07240 7.56067 8.53908 9.22870 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.028299 B = 0.002953 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.192073 B = 9479.487301 C =10029.176634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.250 3.750 3 N -0.490 5.490 4 C 0.237 3.763 5 C -0.267 4.267 6 C 0.112 3.888 7 N -0.334 5.334 8 N -0.331 5.331 9 C 0.225 3.775 10 C -0.241 4.241 11 C 0.583 3.417 12 O -0.547 6.547 13 N -0.694 5.694 14 C 0.122 3.878 15 C 0.117 3.883 16 N -0.637 5.637 17 C -0.230 4.230 18 H 0.092 0.908 19 C -0.067 4.067 20 N -0.953 5.953 21 Si 0.981 3.019 22 H -0.286 1.286 23 H -0.264 1.264 24 H -0.296 1.296 25 C 0.149 3.851 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.184 0.816 30 H 0.245 0.755 31 H 0.214 0.786 32 H 0.411 0.589 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.249 0.751 37 H 0.027 0.973 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 19.523 8.394 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.085 3.915 3 N -0.204 5.204 4 C 0.013 3.987 5 C -0.297 4.297 6 C -0.067 4.067 7 N -0.157 5.157 8 N -0.101 5.101 9 C 0.087 3.913 10 C -0.251 4.251 11 C 0.369 3.631 12 O -0.426 6.426 13 N -0.346 5.346 14 C 0.016 3.984 15 C -0.009 4.009 16 N -0.363 5.363 17 C -0.358 4.358 18 H 0.110 0.890 19 C -0.260 4.260 20 N -0.601 5.601 21 Si 0.809 3.191 22 H -0.212 1.212 23 H -0.189 1.189 24 H -0.223 1.223 25 C 0.021 3.979 26 H 0.117 0.883 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.201 0.799 30 H 0.261 0.739 31 H 0.231 0.769 32 H 0.249 0.751 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.113 19.077 8.323 22.339 hybrid contribution 0.127 -1.032 -0.756 1.285 sum 8.240 18.045 7.567 21.231 Atomic orbital electron populations 1.21078 0.85165 1.04748 1.05199 1.22212 0.98823 0.85669 0.84782 1.68124 1.04154 1.28309 1.19764 1.21360 0.88577 0.88074 1.00684 1.21474 0.89641 0.99470 1.19137 1.24717 1.00251 0.90143 0.91613 1.77931 0.88639 1.17155 1.31978 1.47294 1.08113 1.06252 1.48465 1.22911 0.91629 0.89601 0.87149 1.20421 0.92113 0.96135 1.16443 1.17478 0.86696 0.82747 0.76207 1.90777 1.14197 1.86804 1.50801 1.45646 1.11190 1.04768 1.72965 1.23045 0.97133 0.80344 0.97878 1.22850 0.96232 0.88193 0.93636 1.45652 1.67213 1.02466 1.20980 1.19332 1.35723 0.82758 0.97947 0.89042 1.25721 1.02733 1.02250 0.95323 1.70034 1.51525 1.35851 1.02720 0.85023 0.77149 0.79051 0.77867 1.21240 1.18865 1.22267 1.22434 0.98011 0.84043 0.93376 0.88306 0.89349 0.88380 0.79901 0.73950 0.76907 0.75106 0.87116 0.91773 0.92099 0.94225 0.95536 0.95776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 8.92 71.23 0.64 -1.64 16 2 C 0.25 6.03 6.87 43.51 0.30 6.33 16 3 N -0.49 -12.36 10.37 -179.76 -1.86 -14.22 16 4 C 0.24 5.65 7.91 133.01 1.05 6.70 16 5 C -0.27 -4.77 10.91 22.53 0.25 -4.52 16 6 C 0.11 1.64 11.95 84.92 1.01 2.66 16 7 N -0.33 -6.93 12.65 -57.45 -0.73 -7.66 16 8 N -0.33 -7.42 3.88 -190.85 -0.74 -8.16 16 9 C 0.23 4.35 10.82 84.00 0.91 5.26 16 10 C -0.24 -5.46 5.88 -20.03 -0.12 -5.58 16 11 C 0.58 15.44 7.71 86.72 0.67 16.11 16 12 O -0.55 -17.83 13.04 -3.99 -0.05 -17.88 16 13 N -0.69 -17.43 5.34 -444.62 -2.37 -19.81 16 14 C 0.12 4.18 4.62 45.55 0.21 4.39 16 15 C 0.12 4.12 8.44 83.18 0.70 4.82 16 16 N -0.64 -31.27 3.76 -738.02 -2.78 -34.05 16 17 C -0.23 -12.52 10.73 84.03 0.90 -11.62 16 18 H 0.09 4.69 7.84 -2.91 -0.02 4.67 16 19 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 20 N -0.95 -57.43 11.81 21.65 0.26 -57.17 16 21 Si 0.98 45.03 29.56 68.60 2.03 47.06 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 25 C 0.15 6.78 7.05 83.26 0.59 7.37 16 26 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.10 2.46 5.93 -2.39 -0.01 2.44 16 29 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.24 1.08 8.06 -2.91 -0.02 1.05 16 31 H 0.21 2.55 6.50 -2.91 -0.02 2.53 16 32 H 0.41 7.48 6.87 -92.71 -0.64 6.84 16 33 H 0.11 4.12 7.45 -2.38 -0.02 4.11 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 1.88 8.13 -2.39 -0.02 1.86 16 36 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.02 1.28 7.58 -2.39 -0.02 1.26 16 Total: -1.00 -74.73 326.34 1.80 -72.93 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.48 Total: 12.01 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 7.57 Total: 26.96 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -8.23 Total: -141.08 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.05 Total: -17.88 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -74.73 1.80 -72.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031168450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.521 kcal (2) G-P(sol) polarization free energy of solvation -74.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds