Wall clock time and date at job start Tue Mar 31 2020 03:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35338 * 125.69430 * 2 1 4 4 N 1.36156 * 107.14496 * 179.97438 * 3 2 1 5 5 C 1.36217 * 133.93102 * 179.97438 * 4 3 2 6 6 C 1.35478 * 120.52761 * 180.02562 * 5 4 3 7 7 N 1.32697 * 122.11377 * 359.73688 * 6 5 4 8 8 C 1.32287 * 121.18562 * 0.53406 * 7 6 5 9 9 C 1.47802 * 120.59290 * 179.75978 * 8 7 6 10 10 O 1.21563 * 120.00287 * 179.71958 * 9 8 7 11 11 N 1.34777 * 119.99430 * 359.71656 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72379 * 11 9 8 13 13 C 1.53951 * 113.74297 * 254.01897 * 12 11 9 14 14 N 1.47814 * 86.03758 * 222.08522 * 13 12 11 15 15 C 1.36932 * 134.45715 * 204.64642 * 14 13 12 16 16 H 1.07995 * 120.00326 * 179.86751 * 15 14 13 17 17 C 1.38817 * 119.99793 * 359.86085 * 15 14 13 18 18 N 1.31613 * 120.00127 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99909 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47134 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47068 * 119.99857 * 19 17 15 22 22 H 1.48493 * 109.47426 * 240.00266 * 19 17 15 23 23 C 1.47577 * 91.05097 * 24.55007 * 14 13 12 24 24 C 1.37573 * 106.99536 * 0.02562 * 4 3 2 25 25 N 1.31849 * 108.10073 * 359.97438 * 24 4 3 26 26 H 1.08995 * 109.47290 * 270.01572 * 1 2 3 27 27 H 1.08994 * 109.47044 * 30.02684 * 1 2 3 28 28 H 1.09005 * 109.47073 * 150.02008 * 1 2 3 29 29 H 1.08004 * 126.42550 * 359.97438 * 3 2 1 30 30 H 1.08006 * 119.73652 * 0.04776 * 5 4 3 31 31 H 1.08009 * 118.94188 * 180.02562 * 6 5 4 32 32 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 33 33 H 1.09000 * 112.94810 * 25.60828 * 12 11 9 34 34 H 1.09000 * 113.77101 * 336.35008 * 13 12 11 35 35 H 1.09000 * 113.76926 * 107.74289 * 13 12 11 36 36 H 0.97003 * 119.99806 * 180.02562 * 18 17 15 37 37 H 1.09005 * 113.76936 * 221.15467 * 23 14 13 38 38 H 1.08997 * 113.77659 * 89.75281 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2966 1.0991 0.0000 4 7 3.5875 0.6660 0.0006 5 6 4.7955 1.2954 0.0004 6 6 5.9450 0.5784 0.0006 7 7 5.9488 -0.7485 0.0062 8 6 4.8190 -1.4367 0.0012 9 6 4.8385 -2.9146 0.0022 10 8 3.7939 -3.5363 0.0028 11 7 6.0145 -3.5730 0.0024 12 6 6.0339 -5.0378 0.0094 13 6 6.4336 -5.6459 1.3661 14 7 7.2472 -6.5996 0.5830 15 6 7.7224 -7.8642 0.8067 16 1 8.3108 -8.3617 0.0500 17 6 7.4478 -8.5068 2.0061 18 7 6.7304 -7.9007 2.9282 19 14 8.0966 -10.2317 2.3116 20 1 8.8696 -10.6866 1.1279 21 1 8.9795 -10.2243 3.5056 22 1 6.9573 -11.1552 2.5440 23 6 7.3398 -5.6431 -0.5370 24 6 3.5502 -0.7092 0.0003 25 7 2.2863 -1.0847 0.0002 26 1 -0.3633 0.0003 1.0276 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.9650 2.1270 -0.0004 30 1 4.8373 2.3746 0.0005 31 1 6.8887 1.1038 0.0009 32 1 6.8481 -3.0769 0.0022 33 1 5.1334 -5.4768 -0.4200 34 1 7.0231 -4.9755 1.9915 35 1 5.6047 -6.1095 1.9010 36 1 6.5389 -8.3496 3.7665 37 1 7.2330 -6.1045 -1.5188 38 1 8.1960 -4.9718 -0.4719 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031222151.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:45 Heat of formation + Delta-G solvation = 107.749908 kcal Electronic energy + Delta-G solvation = -23348.309692 eV Core-core repulsion = 19807.663864 eV Total energy + Delta-G solvation = -3540.645828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.09397 -41.06841 -39.65001 -39.03909 -35.61254 -35.10867 -33.73574 -32.80988 -30.95176 -29.47468 -28.93065 -26.63909 -26.34293 -24.74166 -24.33517 -22.33684 -21.67346 -21.36801 -19.46376 -19.27892 -18.76805 -17.51033 -17.42683 -17.23943 -16.95506 -16.33133 -15.96350 -15.72814 -15.67957 -15.22015 -14.63819 -14.51996 -14.38475 -14.01605 -13.69679 -13.48632 -13.30588 -13.21872 -13.12524 -12.83702 -12.67443 -12.44948 -12.27111 -11.91480 -11.56617 -11.52074 -11.29645 -10.90754 -10.90060 -10.06565 -9.82546 -9.23742 -8.98077 -7.91308 -5.27285 -1.06131 0.11338 1.22228 1.46036 1.48422 1.53153 1.58731 1.75107 1.92428 2.47426 2.53583 2.78943 2.92980 3.19788 3.25924 3.41067 3.67620 3.82777 3.99145 4.08848 4.17567 4.25816 4.32288 4.49952 4.72238 4.74586 4.82443 4.86331 4.89799 5.03849 5.05707 5.11213 5.22431 5.47311 5.50860 5.64787 5.75706 5.88147 6.27332 6.56747 6.78131 6.87740 7.12854 7.58040 8.50798 9.25798 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.027321 B = 0.002984 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.612357 B = 9381.244981 C =10008.301484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.029 3.971 3 C -0.062 4.062 4 N -0.357 5.357 5 C 0.065 3.935 6 C 0.012 3.988 7 N -0.418 5.418 8 C 0.135 3.865 9 C 0.567 3.433 10 O -0.549 6.549 11 N -0.680 5.680 12 C 0.117 3.883 13 C 0.153 3.847 14 N -0.637 5.637 15 C -0.233 4.233 16 H 0.093 0.907 17 C -0.072 4.072 18 N -0.956 5.956 19 Si 0.985 3.015 20 H -0.260 1.260 21 H -0.291 1.291 22 H -0.294 1.294 23 C 0.126 3.874 24 C 0.166 3.834 25 N -0.496 5.496 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.060 0.940 29 H 0.244 0.756 30 H 0.237 0.763 31 H 0.232 0.768 32 H 0.419 0.581 33 H 0.095 0.905 34 H 0.026 0.974 35 H 0.034 0.966 36 H 0.248 0.752 37 H 0.069 0.931 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.839 28.770 -8.200 30.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.103 4.103 3 C -0.194 4.194 4 N -0.031 5.031 5 C -0.060 4.060 6 C -0.130 4.130 7 N -0.134 5.134 8 C -0.028 4.028 9 C 0.351 3.649 10 O -0.424 6.424 11 N -0.332 5.332 12 C 0.011 3.989 13 C 0.026 3.974 14 N -0.364 5.364 15 C -0.361 4.361 16 H 0.111 0.889 17 C -0.264 4.264 18 N -0.605 5.605 19 Si 0.813 3.187 20 H -0.184 1.184 21 H -0.218 1.218 22 H -0.221 1.221 23 C 0.000 4.000 24 C -0.081 4.081 25 N -0.218 5.218 26 H 0.102 0.898 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.260 0.740 30 H 0.253 0.747 31 H 0.248 0.752 32 H 0.257 0.743 33 H 0.113 0.887 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.951 26.978 -8.059 28.588 hybrid contribution 0.107 0.083 0.732 0.744 sum -4.844 27.061 -7.327 28.450 Atomic orbital electron populations 1.20292 0.84386 1.04337 1.03765 1.22046 0.99008 0.87677 1.01575 1.23274 0.78996 1.02719 1.14439 1.43185 1.08065 1.07730 1.44096 1.23817 0.81347 1.03331 0.97543 1.22987 1.00170 0.87796 1.02046 1.68014 1.26342 1.11141 1.07868 1.21589 0.85189 0.93464 1.02570 1.17725 0.84275 0.85639 0.77271 1.90862 1.33235 1.68309 1.50025 1.45661 1.08329 1.06773 1.72484 1.23338 0.99557 0.77877 0.98082 1.22585 0.93116 0.88725 0.92965 1.46033 1.61801 1.11972 1.16615 1.19494 1.26848 0.89264 1.00531 0.88904 1.25762 1.01325 1.02979 0.96373 1.70062 1.44081 1.38790 1.07547 0.84912 0.77158 0.78735 0.77901 1.18365 1.21847 1.22123 1.23000 0.94062 0.90236 0.92659 1.22406 0.94234 0.82288 1.09207 1.70512 0.99349 1.31461 1.20440 0.89801 0.87043 0.92069 0.74014 0.74663 0.75205 0.74258 0.88675 0.95598 0.94776 0.94307 0.91272 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.42 71.24 0.74 -0.34 16 2 C 0.03 0.67 7.07 41.63 0.29 0.97 16 3 C -0.06 -0.94 11.70 83.35 0.98 0.04 16 4 N -0.36 -6.76 2.95 -347.29 -1.02 -7.78 16 5 C 0.06 0.62 11.00 83.37 0.92 1.53 16 6 C 0.01 0.14 11.01 83.92 0.92 1.07 16 7 N -0.42 -9.61 9.67 -181.36 -1.75 -11.37 16 8 C 0.14 4.24 6.97 43.69 0.30 4.54 16 9 C 0.57 21.95 7.81 86.77 0.68 22.63 16 10 O -0.55 -26.15 15.85 -3.91 -0.06 -26.22 16 11 N -0.68 -24.10 5.36 -450.27 -2.42 -26.51 16 12 C 0.12 4.97 4.40 46.75 0.21 5.17 16 13 C 0.15 7.96 7.33 86.44 0.63 8.59 16 14 N -0.64 -34.05 3.70 -716.60 -2.65 -36.70 16 15 C -0.23 -13.45 10.70 84.04 0.90 -12.55 16 16 H 0.09 5.01 7.83 -2.91 -0.02 4.99 16 17 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 18 N -0.96 -60.74 11.39 21.65 0.25 -60.50 16 19 Si 0.99 47.13 29.55 68.60 2.03 49.16 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 23 C 0.13 5.08 8.69 86.49 0.75 5.83 16 24 C 0.17 5.11 7.67 135.58 1.04 6.15 16 25 N -0.50 -17.13 10.74 -177.73 -1.91 -19.04 16 26 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.24 0.75 8.06 -2.91 -0.02 0.73 16 30 H 0.24 -0.71 8.06 -2.91 -0.02 -0.74 16 31 H 0.23 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.42 12.37 8.09 -92.71 -0.75 11.62 16 33 H 0.10 4.41 7.51 -2.39 -0.02 4.40 16 34 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.03 2.05 7.16 -2.39 -0.02 2.04 16 36 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 38 H 0.07 2.39 8.11 -2.39 -0.02 2.37 16 Total: -1.00 -90.71 332.68 1.64 -89.07 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.36 Total: 10.02 kcal Atomic # 6 Polarization: 31.03 SS G_CDS: 8.83 Total: 39.86 kcal Atomic # 7 Polarization: -152.39 SS G_CDS: -9.51 Total: -161.90 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.06 Total: -26.22 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -90.71 1.64 -89.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031222151.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.818 kcal (2) G-P(sol) polarization free energy of solvation -90.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds