Wall clock time and date at job start Tue Mar 31 2020 04:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34781 * 119.99807 * 2 1 4 4 O 1.21589 * 119.99705 * 182.09850 * 3 2 1 5 5 C 1.47533 * 119.99994 * 2.10405 * 3 2 1 6 6 C 1.39411 * 120.75592 * 24.47948 * 5 3 2 7 7 N 1.31912 * 121.01762 * 179.97438 * 6 5 3 8 8 C 1.31797 * 122.59971 * 0.02648 * 7 6 5 9 9 C 1.39439 * 120.63166 * 359.97438 * 8 7 6 10 10 N 1.35703 * 134.42944 * 180.02562 * 9 8 7 11 11 C 1.30137 * 109.49541 * 179.19203 * 10 9 8 12 12 N 1.36265 * 110.05810 * 0.68480 * 11 10 9 13 13 H 0.96998 * 126.29718 * 179.42833 * 12 11 10 14 14 C 1.36924 * 107.39955 * 359.42639 * 12 11 10 15 15 C 1.46499 * 120.00047 * 180.02562 * 2 1 3 16 16 C 1.53498 * 114.20419 * 299.99428 * 15 2 1 17 17 N 1.47069 * 87.98195 * 87.71983 * 16 15 2 18 18 C 1.36936 * 136.05399 * 207.08160 * 17 16 15 19 19 H 1.07998 * 120.00203 * 9.01201 * 18 17 16 20 20 C 1.38817 * 119.99953 * 189.00668 * 18 17 16 21 21 N 1.31609 * 120.00319 * 195.00070 * 20 18 17 22 22 Si 1.86803 * 119.99605 * 15.00745 * 20 18 17 23 23 H 1.48499 * 109.46897 * 269.99548 * 22 20 18 24 24 H 1.48503 * 109.47303 * 29.99603 * 22 20 18 25 25 H 1.48501 * 109.47125 * 149.99707 * 22 20 18 26 26 C 1.47064 * 87.88614 * 27.34415 * 17 16 15 27 27 H 1.08997 * 109.47011 * 264.34709 * 1 2 3 28 28 H 1.08999 * 109.47430 * 24.35066 * 1 2 3 29 29 H 1.09004 * 109.47139 * 144.34587 * 1 2 3 30 30 H 1.07996 * 119.49141 * 0.02562 * 6 5 3 31 31 H 1.08000 * 119.68188 * 180.02562 * 8 7 6 32 32 H 1.08004 * 124.97439 * 180.08970 * 11 10 9 33 33 H 1.08998 * 113.27919 * 166.93657 * 15 2 1 34 34 H 1.08997 * 113.46889 * 332.94186 * 16 15 2 35 35 H 1.09001 * 113.46895 * 202.49792 * 16 15 2 36 36 H 0.97005 * 119.99690 * 354.92184 * 21 20 18 37 37 H 1.09002 * 113.47136 * 87.43512 * 26 17 16 38 38 H 1.09005 * 113.46737 * 217.87939 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3541 1.1676 -0.0386 5 6 1.4019 2.4445 0.0469 6 6 0.1176 2.5072 0.5857 7 7 -0.5458 3.6464 0.6307 8 6 -0.0453 4.7780 0.1765 9 6 1.2322 4.8167 -0.3808 10 7 2.0047 5.7942 -0.9189 11 6 3.1480 5.2920 -1.2853 12 7 3.1780 3.9558 -1.0199 13 1 3.9126 3.3499 -1.2051 14 6 1.9805 3.6257 -0.4438 15 6 2.1975 -1.2687 -0.0006 16 6 1.9060 -2.1642 1.2116 17 7 0.7773 -2.7295 0.4570 18 6 -0.4240 -3.3092 0.7666 19 1 -0.7811 -3.3004 1.7858 20 6 -1.1829 -3.9083 -0.2295 21 7 -2.4471 -4.1996 -0.0083 22 14 -0.4095 -4.3009 -1.8840 23 1 -0.5786 -3.1420 -2.7969 24 1 1.0376 -4.5794 -1.7004 25 1 -1.0726 -5.4935 -2.4698 26 6 1.5094 -2.4041 -0.7762 27 1 -0.3633 -0.1012 1.0226 28 1 -0.3634 0.9362 -0.4237 29 1 -0.3634 -0.8351 -0.5990 30 1 -0.3409 1.6093 0.9729 31 1 -0.6301 5.6839 0.2374 32 1 3.9515 5.8505 -1.7423 33 1 3.2575 -1.1540 -0.2268 34 1 1.6006 -1.6087 2.0982 35 1 2.6958 -2.8867 1.4174 36 1 -2.8290 -4.0641 0.8730 37 1 2.1947 -3.1897 -1.0944 38 1 0.8662 -2.0528 -1.5831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042753323.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:38 Heat of formation + Delta-G solvation = 124.173930 kcal Electronic energy + Delta-G solvation = -24491.391122 eV Core-core repulsion = 20951.457492 eV Total energy + Delta-G solvation = -3539.933629 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.55220 -41.65030 -39.89743 -39.22481 -36.02545 -34.60615 -34.20489 -32.30773 -31.26079 -29.91372 -28.17496 -26.96475 -26.12393 -24.36303 -24.20127 -23.17490 -21.86879 -20.42310 -19.54677 -19.40737 -18.97178 -18.11870 -17.54995 -17.00787 -16.71070 -16.34739 -16.26476 -15.97909 -15.67410 -15.56716 -15.20627 -14.94476 -14.54713 -14.30430 -14.17574 -13.76559 -13.41331 -13.25022 -12.68756 -12.49874 -12.34907 -12.06967 -11.97262 -11.63369 -11.49713 -11.39017 -11.27687 -10.81648 -10.64760 -10.27258 -9.74294 -9.49278 -9.22123 -8.54896 -5.41816 -0.74127 0.19225 1.31608 1.41464 1.51329 1.66013 1.69051 1.83066 1.85585 2.55367 2.67881 2.96727 3.01931 3.14020 3.22489 3.41362 3.52782 3.61659 3.80444 4.03788 4.09371 4.18474 4.21217 4.32217 4.50139 4.53628 4.63063 4.64917 4.76663 4.80645 4.81539 5.06124 5.06371 5.21888 5.29487 5.45019 6.00282 6.16874 6.26699 6.53276 6.74381 6.78856 6.87200 7.36853 8.30625 8.95735 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.023681 B = 0.004191 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.107538 B = 6679.906430 C = 7173.368992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.572 5.572 3 C 0.569 3.431 4 O -0.570 6.570 5 C -0.190 4.190 6 C 0.120 3.880 7 N -0.502 5.502 8 C 0.197 3.803 9 C -0.030 4.030 10 N -0.505 5.505 11 C 0.286 3.714 12 N -0.578 5.578 13 H 0.441 0.559 14 C 0.111 3.889 15 C 0.116 3.884 16 C 0.106 3.894 17 N -0.644 5.644 18 C -0.280 4.280 19 H 0.050 0.950 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 1.093 2.907 23 H -0.279 1.279 24 H -0.253 1.253 25 H -0.308 1.308 26 C 0.088 3.912 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.191 0.809 31 H 0.196 0.804 32 H 0.276 0.724 33 H 0.128 0.872 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.248 0.752 37 H 0.076 0.924 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.426 18.998 -3.837 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.301 5.301 3 C 0.359 3.641 4 O -0.452 6.452 5 C -0.198 4.198 6 C -0.031 4.031 7 N -0.212 5.212 8 C 0.032 3.968 9 C -0.151 4.151 10 N -0.225 5.225 11 C -0.001 4.001 12 N -0.189 5.189 13 H 0.284 0.716 14 C -0.012 4.012 15 C 0.011 3.989 16 C -0.020 4.020 17 N -0.372 5.372 18 C -0.407 4.407 19 H 0.068 0.932 20 C -0.268 4.268 21 N -0.614 5.614 22 Si 0.919 3.081 23 H -0.206 1.206 24 H -0.177 1.177 25 H -0.237 1.237 26 C -0.037 4.037 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.085 0.915 30 H 0.207 0.793 31 H 0.212 0.788 32 H 0.292 0.708 33 H 0.146 0.854 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.392 19.087 -4.973 23.294 hybrid contribution 1.142 -1.269 1.620 2.354 sum 13.535 17.818 -3.353 22.626 Atomic orbital electron populations 1.22386 0.78358 1.03293 1.02476 1.47260 1.07577 1.04707 1.70576 1.18107 0.86687 0.83287 0.75976 1.90675 1.13791 1.87695 1.53014 1.19761 0.97720 0.91588 1.10767 1.23983 0.88852 0.97435 0.92838 1.67883 1.35965 0.98513 1.18875 1.22831 0.89302 0.96996 0.87709 1.20384 0.98208 0.89649 1.06821 1.70512 1.03621 1.30249 1.18145 1.26729 0.97562 0.80064 0.95775 1.43291 1.14465 1.11665 1.49498 0.71628 1.18823 0.89020 0.95240 0.98093 1.22399 0.96468 0.82227 0.97831 1.22990 0.89830 0.93865 0.95336 1.46333 1.15128 1.72136 1.03638 1.19867 0.93138 1.32137 0.95572 0.93177 1.26810 0.95158 0.98074 1.06754 1.71004 1.12145 1.55040 1.23200 0.83420 0.75769 0.76360 0.72545 1.20615 1.17744 1.23659 1.23284 0.94161 0.94777 0.91526 0.91781 0.88748 0.91539 0.79321 0.78769 0.70849 0.85430 0.93731 0.91418 0.94279 0.90622 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.47 7.71 127.77 0.98 3.45 16 2 N -0.57 -17.99 3.12 -825.17 -2.57 -20.56 16 3 C 0.57 17.20 7.52 86.69 0.65 17.85 16 4 O -0.57 -18.36 15.50 -4.00 -0.06 -18.43 16 5 C -0.19 -5.19 5.56 -20.02 -0.11 -5.30 16 6 C 0.12 3.18 8.71 84.96 0.74 3.92 16 7 N -0.50 -12.93 10.30 -193.92 -2.00 -14.93 16 8 C 0.20 4.41 11.25 84.99 0.96 5.37 16 9 C -0.03 -0.71 7.27 39.46 0.29 -0.43 16 10 N -0.51 -10.27 11.28 -191.89 -2.16 -12.44 16 11 C 0.29 3.73 12.97 179.97 2.34 6.06 16 12 N -0.58 -10.23 6.06 -190.32 -1.15 -11.38 16 13 H 0.44 6.72 8.27 -92.71 -0.77 5.95 16 14 C 0.11 2.73 6.93 39.50 0.27 3.00 16 15 C 0.12 3.72 4.68 45.55 0.21 3.93 16 16 C 0.11 3.79 8.31 83.18 0.69 4.48 16 17 N -0.64 -28.24 2.35 -737.98 -1.74 -29.98 16 18 C -0.28 -15.05 10.86 84.04 0.91 -14.14 16 19 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 20 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 21 N -0.97 -60.06 13.70 21.65 0.30 -59.77 16 22 Si 1.09 50.62 25.53 68.60 1.75 52.37 16 23 H -0.28 -12.16 6.97 99.48 0.69 -11.47 16 24 H -0.25 -10.35 5.66 99.48 0.56 -9.79 16 25 H -0.31 -14.91 7.11 99.48 0.71 -14.21 16 26 C 0.09 3.24 4.65 83.27 0.39 3.63 16 27 H 0.06 2.11 7.31 -2.39 -0.02 2.09 16 28 H 0.09 2.61 4.82 -2.39 -0.01 2.60 16 29 H 0.07 2.56 5.80 -2.38 -0.01 2.55 16 30 H 0.19 4.89 4.33 -2.91 -0.01 4.88 16 31 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.28 0.18 8.06 -2.91 -0.02 0.16 16 33 H 0.13 3.68 7.27 -2.39 -0.02 3.66 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.25 15.47 8.73 -92.70 -0.81 14.66 16 37 H 0.08 2.60 6.98 -2.39 -0.02 2.58 16 38 H 0.05 1.97 5.40 -2.38 -0.01 1.95 16 Total: -1.00 -72.93 308.89 1.33 -71.60 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.18 Total: 15.45 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 8.79 Total: 28.06 kcal Atomic # 7 Polarization: -139.73 SS G_CDS: -9.33 Total: -149.06 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.06 Total: -18.43 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 1.75 Total: 52.37 kcal Total: -72.93 1.33 -71.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042753323.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.774 kcal (2) G-P(sol) polarization free energy of solvation -72.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds