Wall clock time and date at job start Tue Mar 31 2020 04:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34628 * 117.00428 * 2 1 4 4 O 1.21518 * 119.99611 * 0.02562 * 3 2 1 5 5 N 1.34772 * 120.00547 * 179.72741 * 3 2 1 6 6 C 1.46505 * 120.00451 * 180.27686 * 5 3 2 7 7 C 1.50700 * 109.47099 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00153 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99723 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99561 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46419 * 35.02379 * 10 9 7 12 12 C 1.53038 * 109.45821 * 275.06224 * 10 9 7 13 13 C 1.53184 * 109.31655 * 301.34645 * 12 10 9 14 14 N 1.46925 * 108.77707 * 305.36743 * 13 12 10 15 15 C 1.36939 * 120.62879 * 233.58118 * 14 13 12 16 16 H 1.08005 * 119.99436 * 152.30615 * 15 14 13 17 17 C 1.38812 * 120.00468 * 332.30806 * 15 14 13 18 18 N 1.31619 * 119.99466 * 342.60348 * 17 15 14 19 19 Si 1.86795 * 120.00239 * 162.59512 * 17 15 14 20 20 H 1.48505 * 109.46822 * 94.34842 * 19 17 15 21 21 H 1.48497 * 109.47614 * 214.34966 * 19 17 15 22 22 H 1.48500 * 109.47067 * 334.35700 * 19 17 15 23 23 C 1.46924 * 118.73912 * 53.60865 * 14 13 12 24 24 C 1.53041 * 109.45833 * 154.99768 * 10 9 7 25 25 H 1.08995 * 109.50083 * 178.60284 * 24 10 9 26 26 O 1.42898 * 109.49943 * 298.70399 * 24 10 9 27 27 H 1.08995 * 109.46948 * 299.99819 * 1 2 3 28 28 H 1.08994 * 109.46950 * 60.00002 * 1 2 3 29 29 H 1.08997 * 109.46886 * 180.02562 * 1 2 3 30 30 H 0.97001 * 119.99738 * 0.27380 * 5 3 2 31 31 H 1.09000 * 109.47031 * 299.99834 * 6 5 3 32 32 H 1.09003 * 109.46937 * 59.99862 * 6 5 3 33 33 H 0.96996 * 119.99742 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.50050 * 61.30342 * 12 10 9 35 35 H 1.09004 * 109.49511 * 181.39132 * 12 10 9 36 36 H 1.08995 * 109.59078 * 185.57447 * 13 12 10 37 37 H 1.09010 * 109.58524 * 65.15156 * 13 12 10 38 38 H 0.97005 * 119.99741 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.58600 * 186.60712 * 23 14 13 40 40 H 1.09000 * 109.70742 * 66.24615 * 23 14 13 41 41 H 0.96697 * 114.00417 * 179.97438 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1995 0.0000 4 8 1.4015 2.2186 0.0005 5 7 3.4092 1.2701 0.0056 6 6 4.0744 2.5754 0.0117 7 6 5.5683 2.3779 0.0177 8 8 6.0319 1.2571 0.0175 9 7 6.3894 3.4467 0.0245 10 6 7.8417 3.2546 0.0298 11 1 8.0938 2.3746 -0.5618 12 6 8.3245 3.0570 1.4685 13 6 7.9383 4.2806 2.3052 14 7 8.4662 5.4861 1.6518 15 6 9.2497 6.3694 2.3455 16 1 9.9787 6.9705 1.8225 17 6 9.1070 6.4920 3.7208 18 7 8.0222 6.0391 4.3128 19 14 10.4545 7.2997 4.7313 20 1 10.1412 8.7399 4.9130 21 1 10.5401 6.6404 6.0592 22 1 11.7534 7.1610 4.0251 23 6 8.1369 5.7262 0.2402 24 6 8.5210 4.4862 -0.5734 25 1 9.6027 4.3546 -0.5471 26 8 8.0929 4.6523 -1.9266 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.9375 0.4565 0.0055 31 1 3.7851 3.1348 -0.8780 32 1 3.7779 3.1300 0.9020 33 1 6.0186 4.3430 0.0251 34 1 7.8582 2.1664 1.8897 35 1 9.4081 2.9387 1.4756 36 1 8.3650 4.1898 3.3041 37 1 6.8525 4.3482 2.3743 38 1 7.9222 6.1251 5.2738 39 1 8.6948 6.5890 -0.1234 40 1 7.0678 5.9130 0.1388 41 1 8.4845 5.4160 -2.3721 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099695809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:15 Heat of formation + Delta-G solvation = -137.355496 kcal Electronic energy + Delta-G solvation = -25305.271027 eV Core-core repulsion = 21414.394960 eV Total energy + Delta-G solvation = -3890.876067 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.65706 -39.90227 -38.15318 -36.71036 -35.51132 -34.70989 -34.13128 -31.89360 -30.43362 -29.04090 -28.35852 -26.82713 -25.27400 -22.46091 -22.05243 -21.57336 -20.80109 -19.27575 -18.83550 -17.28653 -17.03270 -16.83184 -16.77481 -16.40893 -15.73016 -15.41280 -14.97721 -14.60483 -14.37569 -14.12091 -14.01697 -13.73032 -13.38213 -13.24342 -12.87696 -12.59841 -12.25271 -12.23937 -12.06606 -11.73468 -11.24083 -10.94458 -10.92267 -10.80517 -10.74610 -10.43790 -10.28827 -10.01532 -9.94785 -9.75869 -9.50176 -9.43142 -8.77442 -8.56864 -6.83508 -5.91994 -3.36033 1.94512 2.63402 2.72603 3.29935 3.33729 3.38287 3.39706 4.15962 4.30318 4.45338 4.76050 4.94539 5.02017 5.19393 5.22223 5.23297 5.27016 5.30801 5.39025 5.50445 5.62925 5.87227 5.95042 5.97910 6.14647 6.21037 6.37982 6.44982 6.57503 6.60661 6.79191 7.20293 7.26063 7.52273 7.64665 7.67000 7.84975 8.17771 8.28959 8.30394 9.06101 9.68460 10.23197 11.16205 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.003390 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.912620 B = 8257.178543 C = 9062.176786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.650 3.350 4 O -0.574 6.574 5 N -0.695 5.695 6 C 0.117 3.883 7 C 0.511 3.489 8 O -0.547 6.547 9 N -0.696 5.696 10 C 0.167 3.833 11 H 0.081 0.919 12 C -0.154 4.154 13 C 0.171 3.829 14 N -0.587 5.587 15 C -0.261 4.261 16 H 0.067 0.933 17 C 0.006 3.994 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.117 3.883 24 C 0.075 3.925 25 H 0.068 0.932 26 O -0.571 6.571 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.418 0.582 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.406 0.594 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.022 0.978 38 H 0.255 0.745 39 H 0.059 0.941 40 H 0.023 0.977 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 -8.108 -9.713 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.285 6.285 3 C 0.402 3.598 4 O -0.463 6.463 5 N -0.357 5.357 6 C -0.009 4.009 7 C 0.296 3.704 8 O -0.426 6.426 9 N -0.347 5.347 10 C 0.062 3.938 11 H 0.099 0.901 12 C -0.194 4.194 13 C 0.045 3.955 14 N -0.311 5.311 15 C -0.390 4.390 16 H 0.084 0.916 17 C -0.193 4.193 18 N -0.542 5.542 19 Si 0.733 3.267 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.010 4.010 24 C 0.014 3.986 25 H 0.086 0.914 26 O -0.376 6.376 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.257 0.743 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.242 0.758 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.393 -8.948 -9.387 15.448 hybrid contribution 0.880 1.140 0.531 1.535 sum -7.513 -7.808 -8.857 13.994 Atomic orbital electron populations 1.23200 0.74303 1.03444 1.02805 1.86245 1.24227 1.30888 1.87105 1.17965 0.83120 0.82246 0.76462 1.91017 1.64683 1.34783 1.55819 1.44193 1.03159 1.10548 1.77798 1.21044 0.89784 0.84627 1.05472 1.20214 0.88293 0.85349 0.76537 1.90676 1.77257 1.23709 1.50926 1.45819 1.06909 1.09008 1.72971 1.20887 0.78401 0.97254 0.97234 0.90123 1.22602 1.01176 1.01208 0.94409 1.20805 0.96245 0.82072 0.96338 1.44014 1.58956 1.22494 1.05622 1.19144 1.11841 1.17987 0.90011 0.91568 1.25052 0.96718 0.99594 0.97937 1.70029 1.24724 1.49730 1.09697 0.86273 0.81768 0.78897 0.79756 1.21380 1.21460 1.20370 1.21543 0.97726 0.94576 0.87151 1.22750 0.97818 0.96812 0.81176 0.91441 1.86470 1.72917 1.52323 1.25878 0.91752 0.91826 0.87975 0.74298 0.87998 0.87706 0.75792 0.91766 0.91324 0.89154 0.96021 0.93456 0.92199 0.95919 0.77853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.56 101.05 1.07 1.53 16 2 O -0.37 -4.35 10.61 -40.29 -0.43 -4.78 16 3 C 0.65 8.91 8.75 54.05 0.47 9.39 16 4 O -0.57 -9.24 16.13 -19.29 -0.31 -9.56 16 5 N -0.69 -8.95 5.53 -66.47 -0.37 -9.31 16 6 C 0.12 1.48 6.15 -5.19 -0.03 1.44 16 7 C 0.51 7.62 7.86 -10.98 -0.09 7.53 16 8 O -0.55 -9.51 15.33 5.56 0.09 -9.42 16 9 N -0.70 -10.58 4.15 -53.77 -0.22 -10.80 16 10 C 0.17 2.76 2.47 -67.89 -0.17 2.60 16 11 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 12 C -0.15 -2.83 5.77 -26.62 -0.15 -2.98 16 13 C 0.17 3.78 5.05 -3.72 -0.02 3.76 16 14 N -0.59 -13.34 2.99 -172.32 -0.52 -13.85 16 15 C -0.26 -6.66 9.58 -15.06 -0.14 -6.81 16 16 H 0.07 1.66 7.89 -52.48 -0.41 1.24 16 17 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 18 N -0.90 -24.82 11.19 55.49 0.62 -24.20 16 19 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 C 0.12 2.14 5.84 -3.71 -0.02 2.12 16 24 C 0.08 1.19 3.36 -26.61 -0.09 1.10 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 O -0.57 -7.91 13.21 -35.23 -0.47 -8.38 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.42 5.26 7.55 -40.82 -0.31 4.95 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.41 5.89 6.87 -40.82 -0.28 5.61 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.09 2.30 6.04 -51.93 -0.31 1.98 16 37 H 0.02 0.50 7.74 -51.92 -0.40 0.10 16 38 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 40 H 0.02 0.42 6.65 -51.93 -0.35 0.07 16 41 H 0.37 3.66 9.08 45.56 0.41 4.08 16 LS Contribution 341.13 15.07 5.14 5.14 Total: -1.00 -32.03 341.13 -5.72 -37.76 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -4.97 Total: 11.92 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 0.74 Total: 19.76 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.49 Total: -58.17 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.12 Total: -32.13 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.03 -5.72 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099695809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.597 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds