Wall clock time and date at job start Tue Mar 31 2020 04:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81403 * 102.99698 * 2 1 4 4 C 1.50698 * 109.47071 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99641 * 0.02562 * 4 3 2 6 6 N 1.34766 * 120.00264 * 179.97438 * 4 3 2 7 7 C 1.47079 * 120.88484 * 180.02562 * 6 4 3 8 8 C 1.53244 * 108.52310 * 231.20917 * 7 6 4 9 9 N 1.46904 * 109.33584 * 306.16644 * 8 7 6 10 10 C 1.46898 * 110.99462 * 187.25026 * 9 8 7 11 11 C 1.50706 * 109.46984 * 170.00213 * 10 9 8 12 12 O 1.21295 * 119.99863 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.37105 * 119.99873 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99509 * 359.71860 * 14 13 11 16 16 C 1.38950 * 120.00048 * 179.72298 * 14 13 11 17 17 N 1.31413 * 119.99930 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99918 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47151 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47086 * 119.99941 * 18 16 14 21 21 H 1.48500 * 109.46879 * 239.99997 * 18 16 14 22 22 C 1.46901 * 111.26921 * 63.10970 * 9 8 7 23 23 C 1.47077 * 120.88263 * 0.02775 * 6 4 3 24 24 H 1.09000 * 109.47220 * 299.99833 * 1 2 3 25 25 H 1.08999 * 109.47276 * 59.99718 * 1 2 3 26 26 H 1.09003 * 109.46567 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46909 * 60.00311 * 3 2 1 28 28 H 1.08994 * 109.47323 * 300.00036 * 3 2 1 29 29 H 1.08994 * 109.63122 * 111.49886 * 7 6 4 30 30 H 1.09005 * 109.78855 * 351.00842 * 7 6 4 31 31 H 1.09001 * 109.49544 * 186.21029 * 8 7 6 32 32 H 1.08999 * 109.49090 * 66.12553 * 8 7 6 33 33 H 1.09004 * 109.47320 * 50.00617 * 10 9 8 34 34 H 1.09001 * 109.47291 * 289.99914 * 10 9 8 35 35 H 0.96996 * 119.99858 * 359.72084 * 13 11 10 36 36 H 0.96999 * 119.99993 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.49910 * 56.84429 * 22 9 8 38 38 H 1.08996 * 109.49354 * 176.93475 * 22 9 8 39 39 H 1.09003 * 109.63416 * 248.50478 * 23 6 4 40 40 H 1.09005 * 109.63033 * 9.08200 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7194 1.9375 0.0006 5 8 4.4403 0.9621 0.0006 6 7 4.2574 3.1731 0.0002 7 6 5.7161 3.3614 0.0003 8 6 6.0823 4.3270 1.1325 9 7 5.2968 5.5605 0.9930 10 6 5.7399 6.5783 1.9550 11 6 5.0907 7.8978 1.6251 12 8 4.3338 7.9819 0.6811 13 7 5.3521 8.9844 2.3783 14 6 4.7610 10.1846 2.0785 15 1 4.0896 10.2602 1.2359 16 6 5.0259 11.3036 2.8585 17 7 5.8426 11.2113 3.8839 18 14 4.2212 12.9390 2.4495 19 1 3.3520 12.7782 1.2562 20 1 3.4012 13.3893 3.6028 21 1 5.2711 13.9495 2.1640 22 6 3.8587 5.2951 1.1325 23 6 3.4015 4.3691 -0.0002 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8031 2.2371 0.8900 28 1 1.8031 2.2372 -0.8899 29 1 6.0312 3.7811 -0.9550 30 1 6.2118 2.4040 0.1610 31 1 7.1448 4.5643 1.0788 32 1 5.8612 3.8616 2.0931 33 1 6.8236 6.6828 1.9001 34 1 5.4547 6.2749 2.9623 35 1 5.9548 8.9162 3.1352 36 1 6.0278 11.9925 4.4282 37 1 3.6686 4.8162 2.0930 38 1 3.3086 6.2345 1.0787 39 1 3.4943 4.8856 -0.9557 40 1 2.3639 4.0770 0.1619 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112601298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:37 Heat of formation + Delta-G solvation = -50.504721 kcal Electronic energy + Delta-G solvation = -22307.000363 eV Core-core repulsion = 18862.643299 eV Total energy + Delta-G solvation = -3444.357064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.30211 -38.70968 -37.30119 -34.61036 -33.84449 -31.71875 -31.31879 -30.19255 -29.14620 -28.46071 -25.69211 -23.91693 -23.69945 -21.41120 -19.37045 -19.08119 -17.94988 -17.40994 -16.77907 -16.13494 -15.98588 -15.52660 -15.13311 -14.90631 -14.67312 -14.36183 -14.09224 -14.03347 -13.80252 -13.70712 -13.61538 -13.26680 -12.70306 -12.55318 -12.38352 -11.99997 -11.68673 -11.58028 -11.33386 -11.23630 -11.19784 -10.89828 -10.38883 -10.28088 -10.24908 -10.03145 -9.54538 -8.96190 -8.45240 -8.05059 -7.96129 -7.92875 -6.47401 -3.88481 1.18017 2.24289 2.39082 2.83337 3.11949 3.23171 3.29654 3.81663 3.87649 4.17326 4.19540 4.65942 4.76094 4.80441 4.82148 4.88085 4.93349 5.01659 5.15196 5.18086 5.28360 5.35433 5.37441 5.42704 5.66562 5.74005 5.79154 5.83885 6.05479 6.08827 6.19331 6.37277 7.04042 7.22262 7.26046 7.49891 7.92998 8.00320 8.54937 9.12042 9.48033 9.98858 10.70254 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.002690 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.153807 B =10405.727872 C =11057.065353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.189 6.189 3 C -0.126 4.126 4 C 0.532 3.468 5 O -0.527 6.527 6 N -0.608 5.608 7 C 0.120 3.880 8 C 0.040 3.960 9 N -0.514 5.514 10 C 0.046 3.954 11 C 0.443 3.557 12 O -0.579 6.579 13 N -0.563 5.563 14 C -0.299 4.299 15 H 0.104 0.896 16 C 0.022 3.978 17 N -0.901 5.901 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.038 3.962 23 C 0.113 3.887 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.028 0.972 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.029 -16.770 -4.167 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.035 5.965 3 C -0.277 4.277 4 C 0.318 3.682 5 O -0.403 6.403 6 N -0.342 5.342 7 C -0.002 4.002 8 C -0.089 4.089 9 N -0.239 5.239 10 C -0.085 4.085 11 C 0.228 3.772 12 O -0.464 6.464 13 N -0.199 5.199 14 C -0.429 4.429 15 H 0.122 0.878 16 C -0.180 4.180 17 N -0.542 5.542 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.090 4.090 23 C -0.010 4.010 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.054 0.946 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.135 0.865 39 H 0.104 0.896 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.342 -17.762 -5.140 19.247 hybrid contribution -0.986 1.810 1.269 2.421 sum -6.328 -15.952 -3.871 17.593 Atomic orbital electron populations 1.23539 0.95783 1.06711 1.04991 1.87482 1.04647 1.06299 1.98024 1.23566 0.97942 0.99055 1.07146 1.19611 0.88864 0.83057 0.76652 1.90728 1.61953 1.38051 1.49606 1.48161 1.07795 1.05399 1.72861 1.21721 0.79334 0.99760 0.99408 1.22522 0.98969 0.90287 0.97104 1.61504 1.03371 1.07614 1.51430 1.21859 1.00818 0.92200 0.93614 1.19703 0.86570 0.85013 0.85882 1.90472 1.40002 1.84983 1.30941 1.41887 1.42056 1.08016 1.27945 1.19741 1.24614 0.85126 1.13371 0.87812 1.25277 0.97081 0.99931 0.95663 1.69618 1.35616 1.31406 1.17544 0.85803 0.78864 0.81182 0.78511 1.19199 1.20763 1.20717 1.22657 0.89813 1.01095 0.95461 1.21969 0.93317 0.84717 1.00979 0.90431 0.90434 0.87782 0.87153 0.87075 0.90374 0.88705 0.89326 0.94630 0.89106 0.93405 0.77469 0.91865 0.95429 0.86488 0.89649 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 10.76 101.05 1.09 0.17 16 2 S -0.19 -2.02 21.52 -107.50 -2.31 -4.34 16 3 C -0.13 -1.21 4.79 36.00 0.17 -1.04 16 4 C 0.53 6.84 7.73 -10.99 -0.08 6.76 16 5 O -0.53 -8.56 15.32 5.55 0.09 -8.48 16 6 N -0.61 -7.43 3.01 -172.44 -0.52 -7.95 16 7 C 0.12 1.45 6.59 -3.60 -0.02 1.43 16 8 C 0.04 0.50 5.62 -3.70 -0.02 0.48 16 9 N -0.51 -7.90 4.37 -235.73 -1.03 -8.93 16 10 C 0.05 0.77 5.45 -4.97 -0.03 0.75 16 11 C 0.44 9.83 7.44 -10.98 -0.08 9.75 16 12 O -0.58 -14.51 13.91 5.54 0.08 -14.43 16 13 N -0.56 -13.66 5.29 -10.96 -0.06 -13.72 16 14 C -0.30 -8.03 9.68 -14.93 -0.14 -8.18 16 15 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 16 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 17 N -0.90 -23.94 13.05 55.50 0.72 -23.22 16 18 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 C 0.04 0.55 5.26 -3.68 -0.02 0.53 16 23 C 0.11 1.31 6.50 -3.58 -0.02 1.29 16 24 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 25 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.11 0.88 7.66 -51.92 -0.40 0.48 16 28 H 0.11 0.85 8.00 -51.93 -0.42 0.43 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.15 7.07 -51.93 -0.37 0.79 16 31 H 0.09 0.97 7.99 -51.93 -0.41 0.56 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.37 7.97 -51.93 -0.41 0.96 16 34 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 35 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 36 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.12 2.03 5.77 -51.93 -0.30 1.74 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.72 6.02 -51.93 -0.31 0.41 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -32.15 341.62 -8.01 -40.15 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.83 Total: 7.91 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 0.74 Total: 12.41 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.88 Total: -53.82 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.16 Total: -22.91 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: -2.02 SS G_CDS: -2.31 Total: -4.34 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.15 -8.01 -40.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112601298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.350 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds