Wall clock time and date at job start Tue Mar 31 2020 04:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45200 * 109.47343 * 2 1 4 4 C 1.34603 * 117.00223 * 179.97438 * 3 2 1 5 5 O 1.21477 * 119.99607 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00201 * 180.02562 * 4 3 2 7 7 C 1.34768 * 120.00006 * 180.02562 * 6 4 3 8 8 S 1.71199 * 120.00215 * 354.76031 * 7 6 4 9 9 N 1.34783 * 119.99778 * 175.03232 * 7 6 4 10 10 C 1.47084 * 120.88173 * 4.64259 * 9 7 6 11 11 C 1.53692 * 108.27569 * 128.75161 * 10 9 7 12 12 N 1.46905 * 109.25632 * 54.08421 * 11 10 9 13 13 C 1.46896 * 110.99757 * 172.60643 * 12 11 10 14 14 C 1.50700 * 109.47173 * 294.29921 * 13 12 11 15 15 H 1.07998 * 120.00350 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00060 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99975 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00220 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47114 * 60.00087 * 18 16 14 20 20 H 1.48502 * 109.47341 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47169 * 300.00301 * 18 16 14 22 22 C 1.46892 * 111.26843 * 296.75190 * 12 11 10 23 23 C 1.47079 * 120.88170 * 184.91755 * 9 7 6 24 24 H 1.08999 * 109.47488 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47104 * 299.99975 * 1 2 3 26 26 H 1.08994 * 109.46956 * 59.99525 * 1 2 3 27 27 H 1.08996 * 109.46913 * 240.00457 * 2 1 3 28 28 H 1.08994 * 109.46956 * 120.00475 * 2 1 3 29 29 H 0.97005 * 119.99566 * 359.97438 * 6 4 3 30 30 H 1.08993 * 109.62520 * 248.52076 * 10 9 7 31 31 H 1.09002 * 109.62506 * 9.10302 * 10 9 7 32 32 H 1.09000 * 109.65464 * 294.07877 * 11 10 9 33 33 H 1.08998 * 109.42122 * 173.94830 * 11 10 9 34 34 H 1.08997 * 109.47716 * 54.29970 * 13 12 11 35 35 H 1.09000 * 109.47320 * 174.30028 * 13 12 11 36 36 H 0.97004 * 120.00458 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.49639 * 303.14763 * 22 12 11 38 38 H 1.09000 * 109.49454 * 183.06570 * 22 12 11 39 39 H 1.09002 * 109.62554 * 350.90133 * 23 9 7 40 40 H 1.08998 * 109.63047 * 111.48102 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3485 1.5453 0.0005 5 8 4.0884 0.5819 0.0005 6 7 3.8637 2.7907 0.0011 7 6 5.1998 2.9673 0.0011 8 16 6.2418 1.6156 0.1358 9 7 5.7155 4.2084 -0.0994 10 6 4.8409 5.3909 -0.1081 11 6 5.3587 6.3812 0.9470 12 7 6.7793 6.6582 0.6955 13 6 7.2695 7.7310 1.5712 14 6 6.5770 9.0224 1.2193 15 1 5.8457 9.0441 0.4250 16 6 6.8772 10.1765 1.9115 17 7 7.7682 10.1503 2.8785 18 14 6.0185 11.7771 1.4759 19 1 4.5535 11.6190 1.6604 20 1 6.5150 12.8619 2.3602 21 1 6.3046 12.1231 0.0604 22 6 7.5933 5.4445 0.8439 23 6 7.1674 4.4160 -0.2094 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2727 3.5600 0.0007 30 1 4.8638 5.8560 -1.0936 31 1 3.8210 5.0938 0.1361 32 1 5.2426 5.9510 1.9418 33 1 4.7903 7.3091 0.8831 34 1 7.0586 7.4771 2.6100 35 1 8.3449 7.8470 1.4366 36 1 7.9797 10.9622 3.3653 37 1 7.4460 5.0272 1.8400 38 1 8.6455 5.6929 0.7051 39 1 7.6864 3.4740 -0.0322 40 1 7.4096 4.7892 -1.2044 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195473603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:15 Heat of formation + Delta-G solvation = -47.144405 kcal Electronic energy + Delta-G solvation = -22453.933419 eV Core-core repulsion = 19009.722070 eV Total energy + Delta-G solvation = -3444.211349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.42417 -40.85872 -38.78354 -37.42938 -35.91147 -34.49553 -32.61976 -32.44334 -30.52807 -27.96518 -25.75735 -25.53724 -24.01591 -23.36517 -22.76109 -21.61186 -20.46014 -19.27028 -18.48616 -18.18215 -18.00432 -17.28282 -16.68037 -16.37472 -16.13092 -15.89005 -15.56944 -15.42674 -15.22269 -14.87790 -14.18275 -13.89901 -13.61683 -13.54478 -13.14834 -12.89668 -12.77856 -12.73684 -12.59873 -12.53575 -12.49937 -12.40218 -12.24545 -12.07197 -11.80822 -11.56171 -11.34205 -10.75989 -10.60211 -9.26659 -9.03215 -8.20073 -7.97911 -6.30542 -0.29039 0.23500 0.83163 1.44856 1.47270 1.54746 1.55340 1.62929 2.40968 2.73870 3.08140 3.15923 3.56802 3.81992 3.84589 4.04064 4.08011 4.11060 4.24307 4.28838 4.35038 4.47786 4.56429 4.71614 4.75389 4.84579 4.89645 4.95040 5.04803 5.13677 5.16204 5.20298 5.33851 5.43279 5.62784 5.78599 6.00596 6.18910 6.48491 6.85184 6.88030 7.39877 8.91043 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.003154 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.812057 B = 8876.166953 C = 9851.848066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 O -0.363 6.363 4 C 0.633 3.367 5 O -0.488 6.488 6 N -0.610 5.610 7 C 0.567 3.433 8 S -0.627 6.627 9 N -0.532 5.532 10 C 0.098 3.902 11 C 0.050 3.950 12 N -0.536 5.536 13 C 0.208 3.792 14 C -0.522 4.522 15 H 0.074 0.926 16 C 0.001 3.999 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.263 1.263 20 H -0.291 1.291 21 H -0.268 1.268 22 C 0.044 3.956 23 C 0.116 3.884 24 H 0.104 0.896 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.432 0.568 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.019 0.981 33 H 0.100 0.900 34 H -0.039 1.039 35 H 0.007 0.993 36 H 0.263 0.737 37 H 0.019 0.981 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.813 -13.633 -7.986 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.000 4.000 3 O -0.278 6.278 4 C 0.383 3.617 5 O -0.369 6.369 6 N -0.265 5.265 7 C 0.211 3.789 8 S -0.496 6.496 9 N -0.238 5.238 10 C -0.026 4.026 11 C -0.080 4.080 12 N -0.261 5.261 13 C 0.082 3.918 14 C -0.560 4.560 15 H 0.092 0.908 16 C -0.197 4.197 17 N -0.577 5.577 18 Si 0.793 3.207 19 H -0.188 1.188 20 H -0.217 1.217 21 H -0.193 1.193 22 C -0.085 4.085 23 C -0.007 4.007 24 H 0.123 0.877 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.276 0.724 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.038 0.962 33 H 0.118 0.882 34 H -0.022 1.022 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.111 0.889 39 H 0.138 0.862 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.789 -14.628 -8.274 22.386 hybrid contribution -0.675 1.702 1.203 2.191 sum -15.464 -12.926 -7.071 21.359 Atomic orbital electron populations 1.21863 0.89727 1.04704 1.03921 1.23375 0.96707 0.76782 1.03175 1.86266 1.19653 1.35755 1.86158 1.18072 0.82682 0.83092 0.77899 1.91526 1.57918 1.40005 1.47473 1.41534 1.05252 1.09867 1.69800 1.21689 0.85117 0.90847 0.81285 1.93543 1.53640 1.31508 1.70887 1.47874 1.10574 1.02502 1.62886 1.22679 0.93513 0.83547 1.02817 1.22446 0.90635 0.99430 0.95458 1.62069 1.02342 1.06493 1.55212 1.19372 0.94905 0.89186 0.88322 1.21433 1.23442 0.93237 1.17873 0.90788 1.25925 0.95955 1.03031 0.94807 1.70086 1.34365 1.29651 1.23575 0.85441 0.79025 0.78003 0.78186 1.18787 1.21690 1.19254 1.22450 0.99376 0.90103 0.96582 1.22480 0.76143 1.01063 1.01008 0.87712 0.91180 0.90933 0.90776 0.91109 0.72402 0.86228 0.86571 0.96249 0.88154 1.02166 0.97448 0.92789 0.96277 0.88861 0.86152 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 71.98 0.74 -0.38 16 2 C 0.07 1.06 6.19 71.98 0.45 1.50 16 3 O -0.36 -6.73 10.27 -55.12 -0.57 -7.30 16 4 C 0.63 15.54 8.67 129.79 1.13 16.66 16 5 O -0.49 -16.06 12.91 19.92 0.26 -15.80 16 6 N -0.61 -12.79 5.15 -439.37 -2.26 -15.05 16 7 C 0.57 15.33 7.67 179.06 1.37 16.70 16 8 S -0.63 -23.29 24.91 -56.49 -1.41 -24.69 16 9 N -0.53 -12.84 3.00 -705.05 -2.12 -14.95 16 10 C 0.10 1.91 6.57 86.50 0.57 2.48 16 11 C 0.05 1.48 5.47 86.53 0.47 1.95 16 12 N -0.54 -19.71 4.62 -898.91 -4.15 -23.86 16 13 C 0.21 10.12 4.72 85.56 0.40 10.52 16 14 C -0.52 -26.69 8.41 25.60 0.22 -26.47 16 15 H 0.07 3.55 7.13 -2.91 -0.02 3.53 16 16 C 0.00 0.06 5.46 84.66 0.46 0.52 16 17 N -0.94 -54.03 13.29 21.45 0.28 -53.74 16 18 Si 0.97 41.12 29.54 68.60 2.03 43.15 16 19 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 20 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 C 0.04 1.41 5.62 86.39 0.49 1.90 16 23 C 0.12 3.03 6.51 86.35 0.56 3.60 16 24 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.43 5.53 6.34 -92.70 -0.59 4.94 16 30 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.12 1.35 5.73 -2.39 -0.01 1.33 16 32 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 3.16 6.67 -2.39 -0.02 3.14 16 34 H -0.04 -2.14 8.12 -2.39 -0.02 -2.16 16 35 H 0.01 0.40 7.97 -2.39 -0.02 0.38 16 36 H 0.26 14.45 8.31 -92.71 -0.77 13.67 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 2.96 7.99 -2.39 -0.02 2.94 16 39 H 0.12 3.44 5.99 -3.20 -0.02 3.42 16 40 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -73.92 338.10 -0.62 -74.55 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.46 Total: 8.72 kcal Atomic # 6 Polarization: 22.13 SS G_CDS: 6.86 Total: 28.99 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -8.25 Total: -107.61 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.31 Total: -23.10 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: -23.29 SS G_CDS: -1.41 Total: -24.69 kcal Total: -73.92 -0.62 -74.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195473603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.401 kcal (2) G-P(sol) polarization free energy of solvation -73.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds