Wall clock time and date at job start Tue Mar 31 2020 04:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34224 * 117.00306 * 2 1 4 4 O 1.20826 * 119.99773 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00397 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47391 * 179.97438 * 5 3 2 7 7 C 1.34778 * 119.99784 * 180.02562 * 6 5 3 8 8 S 1.71194 * 120.00384 * 355.01621 * 7 6 5 9 9 N 1.34782 * 119.99671 * 175.28984 * 7 6 5 10 10 C 1.47078 * 120.88252 * 4.64712 * 9 7 6 11 11 C 1.53700 * 108.27904 * 128.75083 * 10 9 7 12 12 N 1.46901 * 109.25009 * 54.08658 * 11 10 9 13 13 C 1.46901 * 110.99536 * 172.61004 * 12 11 10 14 14 C 1.50699 * 109.47277 * 294.29541 * 13 12 11 15 15 H 1.08003 * 119.99850 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00276 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00190 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00106 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47159 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47157 * 119.99823 * 18 16 14 21 21 H 1.48507 * 109.47328 * 239.99908 * 18 16 14 22 22 C 1.46907 * 111.26856 * 296.75192 * 12 11 10 23 23 C 1.47082 * 120.88068 * 184.92391 * 9 7 6 24 24 H 1.08998 * 109.47398 * 59.99520 * 1 2 3 25 25 H 1.08998 * 109.47608 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47227 * 300.00199 * 1 2 3 27 27 H 1.09002 * 109.47013 * 60.00072 * 5 3 2 28 28 H 1.09001 * 109.47112 * 300.00011 * 5 3 2 29 29 H 0.96995 * 120.00258 * 359.97438 * 6 5 3 30 30 H 1.09000 * 109.63406 * 248.52448 * 10 9 7 31 31 H 1.09005 * 109.63022 * 9.10443 * 10 9 7 32 32 H 1.08998 * 109.64839 * 294.08696 * 11 10 9 33 33 H 1.08993 * 109.42389 * 173.94539 * 11 10 9 34 34 H 1.08993 * 109.47416 * 54.30352 * 13 12 11 35 35 H 1.09006 * 109.47130 * 174.30114 * 13 12 11 36 36 H 0.96996 * 120.00227 * 179.97438 * 17 16 14 37 37 H 1.08991 * 109.49421 * 303.15410 * 22 12 11 38 38 H 1.08995 * 109.49183 * 183.06752 * 22 12 11 39 39 H 1.08993 * 109.62628 * 350.90135 * 23 9 7 40 40 H 1.09007 * 109.62266 * 111.47791 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6796 -0.0002 7 6 5.2921 2.9949 -0.0003 8 16 6.4698 1.7592 0.1291 9 7 5.6752 4.2835 -0.0969 10 6 4.6818 5.3681 -0.1008 11 6 5.0944 6.4035 0.9575 12 7 6.4780 6.8283 0.7059 13 6 6.8543 7.9435 1.5850 14 6 6.0304 9.1567 1.2382 15 1 5.2999 9.1044 0.4444 16 6 6.2091 10.3333 1.9342 17 7 7.0982 10.3969 2.9012 18 14 5.1873 11.8369 1.5047 19 1 4.2653 11.5065 0.3885 20 1 4.3987 12.2550 2.6916 21 1 6.0860 12.9449 1.0922 22 6 7.4145 5.7056 0.8494 23 6 7.0974 4.6420 -0.2071 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.9564 0.7805 -0.8892 28 1 3.9557 0.7809 0.8908 29 1 3.3137 3.3829 -0.0013 30 1 4.6548 5.8364 -1.0847 31 1 3.6988 4.9652 0.1431 32 1 5.0250 5.9600 1.9507 33 1 4.4322 7.2671 0.8971 34 1 6.6723 7.6652 2.6230 35 1 7.9116 8.1717 1.4500 36 1 7.2242 11.2248 3.3906 37 1 7.3127 5.2719 1.8441 38 1 8.4348 6.0632 0.7107 39 1 7.7121 3.7588 -0.0336 40 1 7.2981 5.0419 -1.2011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197173164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:00 Heat of formation + Delta-G solvation = -65.757599 kcal Electronic energy + Delta-G solvation = -22332.765063 eV Core-core repulsion = 18887.746585 eV Total energy + Delta-G solvation = -3445.018478 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.89743 -41.01460 -38.73572 -37.65731 -36.13926 -34.53723 -32.47398 -31.16728 -29.78507 -28.10537 -27.06898 -25.56884 -24.18870 -23.25587 -22.50947 -21.24246 -19.76134 -18.88712 -18.53026 -18.06930 -17.90654 -17.54111 -16.70763 -16.50334 -16.11607 -15.92304 -15.77195 -15.43725 -15.38796 -15.16507 -14.42213 -14.22914 -14.13033 -13.72581 -13.20367 -13.02518 -12.87586 -12.78716 -12.65517 -12.54710 -12.41223 -12.33066 -12.03256 -11.92037 -11.91429 -11.79319 -11.29637 -10.64538 -10.11482 -9.22155 -8.98172 -8.72605 -8.22181 -6.32652 0.24572 0.64348 0.86755 1.10399 1.41531 1.43039 1.55332 1.69097 2.14346 2.39036 3.07566 3.14368 3.45769 3.63091 3.86002 3.95256 4.11366 4.11730 4.23666 4.27011 4.27865 4.32156 4.36196 4.66523 4.70830 4.74593 4.79068 4.83199 4.92036 5.11641 5.15013 5.20121 5.30917 5.56817 5.61900 5.98926 6.04762 6.18865 6.41934 6.48510 6.83275 7.37672 8.89242 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.003253 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.831659 B = 8605.752149 C = 9870.830996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.469 3.531 4 O -0.531 6.531 5 C 0.138 3.862 6 N -0.675 5.675 7 C 0.587 3.413 8 S -0.711 6.711 9 N -0.556 5.556 10 C 0.107 3.893 11 C 0.053 3.947 12 N -0.537 5.537 13 C 0.208 3.792 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.001 3.999 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.258 1.258 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.043 3.957 23 C 0.122 3.878 24 H 0.067 0.933 25 H 0.135 0.865 26 H 0.064 0.936 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.414 0.586 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.016 0.984 33 H 0.093 0.907 34 H -0.040 1.040 35 H 0.009 0.991 36 H 0.264 0.736 37 H 0.018 0.982 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.062 -18.838 -8.027 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.312 3.688 4 O -0.421 6.421 5 C 0.013 3.987 6 N -0.312 5.312 7 C 0.224 3.776 8 S -0.584 6.584 9 N -0.263 5.263 10 C -0.017 4.017 11 C -0.077 4.077 12 N -0.262 5.262 13 C 0.082 3.918 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.794 3.206 19 H -0.182 1.182 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.086 4.086 23 C -0.001 4.001 24 H 0.085 0.915 25 H 0.153 0.847 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.154 0.846 29 H 0.257 0.743 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.035 0.965 33 H 0.111 0.889 34 H -0.022 1.022 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.109 0.891 39 H 0.141 0.859 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.516 -19.068 -8.325 24.281 hybrid contribution -1.219 1.843 1.212 2.520 sum -13.734 -17.225 -7.113 23.150 Atomic orbital electron populations 1.23662 0.73732 1.06176 1.02886 1.86478 1.25582 1.31263 1.83177 1.23489 0.91650 0.81987 0.71663 1.90700 1.67408 1.37122 1.46849 1.20998 0.86717 0.81511 1.09436 1.44573 1.04103 1.10050 1.72435 1.21675 0.87538 0.88055 0.80299 1.93516 1.47704 1.39635 1.77555 1.47508 1.10372 1.02556 1.65868 1.22391 0.90977 0.86438 1.01943 1.22389 0.91869 0.98024 0.95399 1.62066 1.01841 1.07161 1.55087 1.19381 0.95648 0.88518 0.88257 1.21480 1.21067 0.95605 1.17757 0.91121 1.25919 0.96691 1.02303 0.94803 1.70095 1.35874 1.28162 1.23476 0.85335 0.78478 0.78531 0.78276 1.18193 1.20798 1.20745 1.22463 0.98094 0.91232 0.96792 1.22348 0.78395 0.99147 1.00217 0.91471 0.84667 0.91729 0.84076 0.84612 0.74279 0.87383 0.87820 0.96529 0.88858 1.02238 0.97310 0.92729 0.96378 0.89082 0.85861 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.35 -4.69 10.56 -51.35 -0.54 -5.23 16 3 C 0.47 7.47 8.03 71.23 0.57 8.04 16 4 O -0.53 -11.02 15.42 21.96 0.34 -10.68 16 5 C 0.14 2.14 5.73 85.63 0.49 2.63 16 6 N -0.67 -13.08 5.44 -353.92 -1.92 -15.00 16 7 C 0.59 14.80 7.72 179.05 1.38 16.19 16 8 S -0.71 -22.43 27.05 -56.49 -1.53 -23.95 16 9 N -0.56 -14.25 3.00 -705.04 -2.12 -16.36 16 10 C 0.11 2.54 6.57 86.50 0.57 3.11 16 11 C 0.05 1.76 5.47 86.54 0.47 2.23 16 12 N -0.54 -21.06 4.62 -898.88 -4.15 -25.21 16 13 C 0.21 10.52 4.72 85.56 0.40 10.92 16 14 C -0.52 -27.73 8.41 25.60 0.22 -27.52 16 15 H 0.07 3.60 7.13 -2.91 -0.02 3.58 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.94 -55.01 13.29 21.44 0.28 -54.73 16 18 Si 0.97 42.46 29.54 68.60 2.03 44.49 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 C 0.04 1.46 5.62 86.38 0.49 1.95 16 23 C 0.12 3.35 6.51 86.35 0.56 3.91 16 24 H 0.07 0.57 8.13 -2.39 -0.02 0.55 16 25 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.06 0.59 8.13 -2.38 -0.02 0.57 16 27 H 0.14 1.95 8.08 -2.39 -0.02 1.93 16 28 H 0.14 2.11 7.89 -2.39 -0.02 2.09 16 29 H 0.41 7.46 4.97 -92.71 -0.46 7.00 16 30 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.10 1.91 5.73 -2.38 -0.01 1.89 16 32 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.09 3.33 6.67 -2.39 -0.02 3.31 16 34 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 35 H 0.01 0.48 7.97 -2.38 -0.02 0.46 16 36 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 37 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.09 3.03 7.99 -2.39 -0.02 3.01 16 39 H 0.12 3.55 5.99 -3.21 -0.02 3.53 16 40 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -70.09 340.86 -0.22 -70.30 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.59 Total: 12.96 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 6.81 Total: 23.42 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -7.91 Total: -111.31 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.20 Total: -15.91 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: -22.43 SS G_CDS: -1.53 Total: -23.95 kcal Total: -70.09 -0.22 -70.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197173164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.543 kcal (2) G-P(sol) polarization free energy of solvation -70.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds