Wall clock time and date at job start Tue Mar 31 2020 03:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48498 * 109.47380 * 270.00264 * 3 2 1 5 5 H 1.48506 * 109.46972 * 30.00489 * 3 2 1 6 6 H 1.48501 * 109.47000 * 149.99822 * 3 2 1 7 7 C 1.38799 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00209 * 0.02562 * 7 2 1 9 9 S 1.76204 * 119.99685 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99932 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46922 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00423 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99922 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63144 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 233.55709 * 14 13 11 16 16 C 1.53070 * 109.29524 * 305.57804 * 15 14 13 17 17 N 1.46899 * 109.44608 * 181.23659 * 16 15 14 18 18 C 1.46903 * 110.99959 * 84.79445 * 17 16 15 19 19 C 1.50702 * 109.47091 * 180.02562 * 18 17 16 20 20 N 1.34771 * 119.99799 * 180.02562 * 19 18 17 21 21 O 1.21286 * 119.99910 * 359.97438 * 19 18 17 22 22 C 1.53039 * 109.65812 * 61.15209 * 16 15 14 23 23 C 1.46928 * 120.62874 * 0.02562 * 13 11 10 24 24 H 0.97005 * 120.00303 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47163 * 59.99853 * 10 9 7 26 26 H 1.08997 * 109.47104 * 300.00354 * 10 9 7 27 27 H 1.09002 * 109.58751 * 353.41659 * 14 13 11 28 28 H 1.08996 * 109.58750 * 113.69843 * 14 13 11 29 29 H 1.08997 * 109.50046 * 65.38734 * 15 14 13 30 30 H 1.09003 * 109.49733 * 185.48713 * 15 14 13 31 31 H 1.09007 * 109.35101 * 301.12962 * 16 15 14 32 32 H 1.00902 * 110.99865 * 320.84368 * 17 16 15 33 33 H 1.09000 * 109.46802 * 300.00363 * 18 17 16 34 34 H 1.08994 * 109.46993 * 60.00054 * 18 17 16 35 35 H 0.96997 * 120.00069 * 359.97438 * 20 19 18 36 36 H 0.97005 * 119.99708 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.49876 * 178.74890 * 22 16 15 38 38 H 1.09005 * 109.52615 * 58.67140 * 22 16 15 39 39 H 1.08998 * 109.58787 * 246.16207 * 23 13 11 40 40 H 1.09007 * 109.58600 * 6.44520 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1373 -0.0014 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5730 -3.2325 -0.0008 12 8 6.3439 -2.2964 -0.0014 13 7 6.0456 -4.4948 -0.0011 14 6 7.4921 -4.7524 -0.0016 15 6 7.8291 -5.6869 -1.1678 16 6 6.9634 -6.9458 -1.0737 17 7 7.3048 -7.8575 -2.1737 18 6 8.4593 -8.6957 -1.8237 19 6 8.7796 -9.6153 -2.9739 20 7 9.8077 -10.4813 -2.8781 21 8 8.1115 -9.5765 -3.9855 22 6 5.4849 -6.5623 -1.1695 23 6 5.1242 -5.6391 -0.0022 24 1 -0.4851 0.8401 0.0004 25 1 3.6432 -3.4318 -0.8906 26 1 3.6439 -3.4314 0.8893 27 1 8.0307 -3.8122 -0.1194 28 1 7.7797 -5.2230 0.9385 29 1 7.6277 -5.1790 -2.1110 30 1 8.8825 -5.9628 -1.1203 31 1 7.1489 -7.4413 -0.1206 32 1 7.4743 -7.3468 -3.0273 33 1 9.3202 -8.0601 -1.6165 34 1 8.2237 -9.2878 -0.9395 35 1 10.3417 -10.5126 -2.0690 36 1 10.0141 -11.0730 -3.6186 37 1 4.8719 -7.4625 -1.1246 38 1 5.3031 -6.0451 -2.1117 39 1 5.2177 -6.1845 0.9369 40 1 4.1002 -5.2837 -0.1178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199387946.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:32 Heat of formation + Delta-G solvation = -74.579912 kcal Electronic energy + Delta-G solvation = -21883.712334 eV Core-core repulsion = 18438.311292 eV Total energy + Delta-G solvation = -3445.401042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.26449 -39.71627 -37.84444 -35.27090 -34.09620 -32.43040 -31.90560 -31.37803 -29.04731 -26.98595 -25.60654 -23.82336 -23.36166 -21.25912 -20.95734 -19.26787 -17.96207 -17.67176 -17.23212 -16.74933 -16.12669 -15.68691 -15.43048 -15.12705 -14.94039 -14.91807 -14.38573 -14.13408 -13.77122 -13.62128 -13.23589 -13.05873 -12.85129 -12.75246 -12.42126 -12.07006 -11.79237 -11.47480 -11.27249 -11.11359 -11.00091 -10.87253 -10.57884 -10.34381 -10.14916 -9.85060 -9.48084 -8.99567 -8.83246 -8.60559 -8.48096 -6.91207 -6.27892 -3.99657 2.22251 2.71029 2.88337 2.96353 3.19788 3.34108 3.51161 3.59539 3.82387 4.33793 4.38517 4.42851 4.53025 4.65167 4.73081 4.79421 4.86623 4.96348 5.07459 5.09536 5.11157 5.30440 5.34004 5.42092 5.61430 5.68615 5.74816 5.80172 5.89425 6.00145 6.01724 6.28586 6.50536 6.56733 6.83933 6.97413 7.45253 7.83579 7.95133 8.42573 8.43413 9.18291 10.81284 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.036600 B = 0.002574 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.845951 B =10873.721725 C =11206.086791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.520 4.520 8 H 0.088 0.912 9 S -0.144 6.144 10 C -0.121 4.121 11 C 0.534 3.466 12 O -0.521 6.521 13 N -0.619 5.619 14 C 0.118 3.882 15 C -0.165 4.165 16 C 0.090 3.910 17 N -0.669 5.669 18 C 0.038 3.962 19 C 0.514 3.486 20 N -0.860 5.860 21 O -0.527 6.527 22 C -0.122 4.122 23 C 0.107 3.893 24 H 0.271 0.729 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.353 0.647 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.401 0.599 36 H 0.402 0.598 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.043 -21.326 -0.351 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.082 5.918 10 C -0.272 4.272 11 C 0.322 3.678 12 O -0.395 6.395 13 N -0.355 5.355 14 C -0.005 4.005 15 C -0.205 4.205 16 C -0.019 4.019 17 N -0.300 5.300 18 C -0.094 4.094 19 C 0.298 3.702 20 N -0.424 5.424 21 O -0.402 6.402 22 C -0.161 4.161 23 C -0.017 4.017 24 H 0.080 0.920 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.173 0.827 33 H 0.079 0.921 34 H 0.121 0.879 35 H 0.229 0.771 36 H 0.233 0.767 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.986 -20.134 -0.755 28.380 hybrid contribution 0.347 -0.110 0.014 0.364 sum 20.333 -20.245 -0.741 28.702 Atomic orbital electron populations 1.69938 1.05895 1.27749 1.48078 1.24714 0.94457 0.98961 0.93210 0.86733 0.81882 0.83297 0.79924 1.19223 1.19960 1.15948 1.22306 0.88201 0.97533 1.58741 0.89360 1.84790 1.09364 1.00216 1.97413 1.23310 0.94091 1.04156 1.05631 1.20312 0.90662 0.81830 0.74971 1.90681 1.58762 1.41755 1.48331 1.48090 1.06399 1.05770 1.75245 1.21392 0.81609 1.00342 0.97187 1.22688 0.99923 0.97463 1.00427 1.21620 0.95450 0.90600 0.94270 1.60300 1.37213 1.26260 1.06273 1.21841 0.94353 0.96210 0.97019 1.20655 0.79606 0.80924 0.89024 1.43873 1.34566 1.41934 1.22067 1.90787 1.49108 1.68713 1.31552 1.21884 0.95189 0.99823 0.99213 1.21770 0.94501 0.87006 0.98377 0.91951 0.88467 0.88479 0.88878 0.91801 0.90933 0.91168 0.90108 0.82699 0.92111 0.87893 0.77126 0.76723 0.89680 0.91013 0.91307 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.60 13.97 55.49 0.78 -25.83 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.88 27.74 -169.99 -4.71 17.17 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 7 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 10 C -0.12 -2.36 4.50 36.00 0.16 -2.20 16 11 C 0.53 9.61 7.72 -10.98 -0.08 9.52 16 12 O -0.52 -11.25 15.27 5.56 0.08 -11.17 16 13 N -0.62 -8.09 2.98 -172.80 -0.51 -8.60 16 14 C 0.12 1.26 6.43 -3.71 -0.02 1.24 16 15 C -0.17 -1.36 5.34 -26.59 -0.14 -1.51 16 16 C 0.09 0.69 2.43 -67.66 -0.16 0.53 16 17 N -0.67 -5.47 5.87 -107.93 -0.63 -6.10 16 18 C 0.04 0.22 5.96 -4.97 -0.03 0.19 16 19 C 0.51 3.89 8.14 -10.99 -0.09 3.80 16 20 N -0.86 -3.05 8.87 31.22 0.28 -2.78 16 21 O -0.53 -6.67 17.04 5.55 0.09 -6.58 16 22 C -0.12 -1.10 5.69 -26.64 -0.15 -1.25 16 23 C 0.11 1.08 6.34 -3.74 -0.02 1.06 16 24 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.10 1.77 7.69 -51.92 -0.40 1.38 16 26 H 0.10 1.75 7.94 -51.92 -0.41 1.34 16 27 H 0.09 1.19 7.00 -51.93 -0.36 0.82 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.45 7.42 -51.93 -0.39 0.07 16 31 H 0.08 0.53 7.80 -51.93 -0.40 0.13 16 32 H 0.35 3.26 8.18 -39.29 -0.32 2.94 16 33 H 0.06 0.24 7.41 -51.93 -0.38 -0.15 16 34 H 0.10 0.42 8.05 -51.93 -0.42 0.00 16 35 H 0.40 0.15 8.83 -40.82 -0.36 -0.21 16 36 H 0.40 1.27 8.93 -40.82 -0.36 0.90 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.09 1.01 5.93 -51.92 -0.31 0.70 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -37.09 341.57 -7.62 -44.71 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.81 Total: 0.32 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -0.33 Total: -0.61 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.10 Total: -43.31 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.18 Total: -17.75 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.09 -7.62 -44.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199387946.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.870 kcal (2) G-P(sol) polarization free energy of solvation -37.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds