Wall clock time and date at job start Tue Mar 31 2020 03:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.64489 * 2 1 4 4 C 1.54941 * 110.87658 * 236.73655 * 2 1 3 5 5 N 1.48528 * 103.22879 * 204.16008 * 4 2 1 6 6 C 1.46899 * 111.00191 * 159.72223 * 5 4 2 7 7 C 1.50695 * 109.47170 * 190.00032 * 6 5 4 8 8 N 1.34779 * 119.99877 * 180.02562 * 7 6 5 9 9 O 1.21276 * 120.00530 * 0.02562 * 7 6 5 10 10 C 1.47904 * 105.82054 * 39.20983 * 5 4 2 11 11 C 1.53997 * 107.05712 * 334.66803 * 10 5 4 12 12 H 1.09002 * 110.30886 * 120.14123 * 11 10 5 13 13 N 1.46502 * 110.39204 * 242.26562 * 11 10 5 14 14 C 1.34770 * 119.99871 * 272.15143 * 13 11 10 15 15 O 1.21276 * 120.00531 * 0.02562 * 14 13 11 16 16 C 1.50702 * 119.99606 * 179.97438 * 14 13 11 17 17 S 1.81007 * 109.47072 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00077 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00343 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00051 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00080 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00035 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47034 * 89.99968 * 22 20 18 24 24 H 1.48503 * 109.47422 * 210.00275 * 22 20 18 25 25 H 1.48503 * 109.47014 * 330.00096 * 22 20 18 26 26 H 1.09003 * 109.47003 * 296.85194 * 1 2 3 27 27 H 1.09008 * 109.46770 * 56.84590 * 1 2 3 28 28 H 1.08995 * 109.47408 * 176.84975 * 1 2 3 29 29 H 1.09004 * 110.66629 * 322.59578 * 4 2 1 30 30 H 1.08998 * 110.66439 * 85.72687 * 4 2 1 31 31 H 1.09005 * 109.46734 * 309.99896 * 6 5 4 32 32 H 1.08999 * 109.47092 * 70.00222 * 6 5 4 33 33 H 0.97000 * 120.00194 * 359.97438 * 8 7 6 34 34 H 0.97002 * 119.99957 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.91720 * 215.31594 * 10 5 4 36 36 H 1.08993 * 109.91976 * 94.02293 * 10 5 4 37 37 H 0.97005 * 119.99621 * 92.15822 * 13 11 10 38 38 H 1.08998 * 109.47404 * 299.99751 * 16 14 13 39 39 H 1.08996 * 109.47420 * 60.00419 * 16 14 13 40 40 H 0.97004 * 120.00214 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0821 -0.7940 -1.2105 5 7 3.4359 -1.2052 -0.7584 6 6 3.9293 -2.3451 -1.5427 7 6 5.1821 -2.8886 -0.9055 8 7 5.8153 -3.9431 -1.4564 9 8 5.6206 -2.3771 0.1029 10 6 3.2920 -1.5664 0.6687 11 6 2.0770 -0.7908 1.2106 12 1 1.3217 -1.4829 1.5829 13 7 2.4910 0.1286 2.2735 14 6 2.5430 -0.2978 3.5509 15 8 2.2476 -1.4427 3.8206 16 6 2.9694 0.6478 4.6440 17 16 2.9382 -0.2154 6.2347 18 6 3.4636 1.0863 7.2996 19 1 3.6905 2.0600 6.8911 20 6 3.5868 0.8602 8.6635 21 7 3.9787 1.8328 9.4592 22 14 3.1950 -0.8240 9.3702 23 1 4.4238 -1.6578 9.3728 24 1 2.6958 -0.6735 10.7607 25 1 2.1537 -1.4796 8.5387 26 1 -0.3633 0.4642 0.9169 27 1 -0.3633 0.5621 -0.8604 28 1 -0.3634 -1.0260 -0.0565 29 1 1.4622 -1.6676 -1.4127 30 1 2.1482 -0.1556 -2.0915 31 1 3.1677 -3.1245 -1.5694 32 1 4.1507 -2.0184 -2.5587 33 1 5.4645 -4.3525 -2.2628 34 1 6.6216 -4.2932 -1.0461 35 1 4.1897 -1.2801 1.2165 36 1 3.1211 -2.6385 0.7650 37 1 2.7275 1.0443 2.0577 38 1 3.9803 1.0029 4.4436 39 1 2.2862 1.4964 4.6774 40 1 4.0652 1.6747 10.4123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206089897.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:35 Heat of formation + Delta-G solvation = -67.618671 kcal Electronic energy + Delta-G solvation = -22257.179344 eV Core-core repulsion = 18812.080163 eV Total energy + Delta-G solvation = -3445.099180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51868 -39.37624 -38.09079 -34.47332 -33.97793 -32.80428 -32.38452 -30.03859 -28.60113 -27.38616 -25.56901 -24.91197 -22.03930 -21.08751 -20.36577 -20.06849 -17.80195 -17.61377 -17.04121 -16.85417 -16.25699 -15.90019 -15.30623 -14.95889 -14.81554 -14.78182 -14.23759 -13.79717 -13.59939 -13.41274 -13.21562 -12.75329 -12.68617 -12.56782 -12.42278 -12.10237 -11.87537 -11.42374 -11.21102 -11.17561 -10.96320 -10.93959 -10.52624 -10.07007 -9.97186 -9.80590 -9.42415 -8.96045 -8.88299 -8.68551 -8.43464 -6.85166 -6.23842 -3.94710 2.36723 2.83607 3.02868 3.05801 3.35869 3.39273 3.54847 3.69272 3.77377 4.25741 4.38168 4.39286 4.60147 4.71097 4.81924 4.84173 4.91581 5.07483 5.15255 5.16765 5.23725 5.29808 5.38959 5.47046 5.61840 5.73880 5.85599 5.85737 5.97318 6.09919 6.12972 6.46193 6.56538 6.58258 6.73348 7.01070 7.72446 7.99442 7.99831 8.47279 8.59153 9.22572 10.85512 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.019087 B = 0.003321 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.631795 B = 8430.394070 C = 9360.669191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.091 0.909 4 C 0.039 3.961 5 N -0.501 5.501 6 C 0.025 3.975 7 C 0.511 3.489 8 N -0.859 5.859 9 O -0.517 6.517 10 C 0.032 3.968 11 C 0.139 3.861 12 H 0.094 0.906 13 N -0.724 5.724 14 C 0.532 3.468 15 O -0.521 6.521 16 C -0.124 4.124 17 S -0.143 6.143 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.882 5.882 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.235 1.235 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.399 0.601 34 H 0.403 0.597 35 H 0.107 0.893 36 H 0.044 0.956 37 H 0.401 0.599 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.541 -7.768 -28.857 30.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.089 4.089 5 N -0.225 5.225 6 C -0.106 4.106 7 C 0.295 3.705 8 N -0.424 5.424 9 O -0.391 6.391 10 C -0.097 4.097 11 C 0.033 3.967 12 H 0.112 0.888 13 N -0.378 5.378 14 C 0.318 3.682 15 O -0.396 6.396 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.667 4.667 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.519 5.519 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.227 0.773 34 H 0.234 0.766 35 H 0.125 0.875 36 H 0.063 0.937 37 H 0.235 0.765 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.475 -8.731 -27.613 29.168 hybrid contribution 0.123 0.078 -0.137 0.200 sum -3.352 -8.653 -27.750 29.260 Atomic orbital electron populations 1.21776 0.93701 1.02171 1.02443 1.22347 0.96084 1.00192 0.93373 0.89039 1.23359 0.88472 0.98849 0.98178 1.64736 1.23075 1.31718 1.03007 1.22227 0.95079 0.93999 0.99327 1.20553 0.85722 0.79796 0.84441 1.43849 1.31671 1.34852 1.32076 1.90819 1.66185 1.57989 1.24088 1.23468 0.99981 0.97967 0.88246 1.21865 0.95866 0.91962 0.87045 0.88786 1.45987 1.70677 1.14917 1.06238 1.20285 0.76483 0.88555 0.82846 1.90684 1.47273 1.19160 1.82462 1.23278 1.04947 1.01550 0.97641 1.84762 1.89363 1.20264 0.97244 1.22333 1.51998 0.98255 0.94148 0.89384 1.24711 0.93427 0.97336 0.95863 1.69943 1.45067 1.32085 1.04757 0.86731 0.80988 0.84394 0.79715 1.19218 1.19995 1.15935 0.91805 0.92145 0.92473 0.93207 0.89432 0.91632 0.87550 0.77297 0.76597 0.87462 0.93749 0.76473 0.88421 0.88490 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.17 37.16 0.34 -0.74 16 2 C -0.10 -0.87 3.36 -88.76 -0.30 -1.17 16 3 H 0.09 0.76 7.75 -51.93 -0.40 0.36 16 4 C 0.04 0.30 6.01 -1.90 -0.01 0.28 16 5 N -0.50 -5.09 5.26 -231.89 -1.22 -6.31 16 6 C 0.03 0.19 5.48 -4.98 -0.03 0.16 16 7 C 0.51 5.11 7.67 -10.99 -0.08 5.02 16 8 N -0.86 -4.90 8.87 31.22 0.28 -4.62 16 9 O -0.52 -7.99 14.63 5.56 0.08 -7.91 16 10 C 0.03 0.42 4.87 -2.75 -0.01 0.41 16 11 C 0.14 1.72 2.89 -66.57 -0.19 1.53 16 12 H 0.09 1.31 7.31 -51.93 -0.38 0.93 16 13 N -0.72 -10.09 5.02 -52.49 -0.26 -10.35 16 14 C 0.53 10.00 7.85 -10.99 -0.09 9.91 16 15 O -0.52 -11.72 15.54 5.56 0.09 -11.63 16 16 C -0.12 -2.51 6.16 36.01 0.22 -2.29 16 17 S -0.14 -3.75 18.55 -107.50 -1.99 -5.74 16 18 C -0.52 -15.39 10.04 30.94 0.31 -15.08 16 19 H 0.09 2.71 8.03 -52.48 -0.42 2.29 16 20 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 21 N -0.88 -27.18 13.97 55.49 0.78 -26.40 16 22 Si 0.86 22.33 27.74 -169.99 -4.71 17.62 16 23 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.24 -6.12 6.74 56.52 0.38 -5.74 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 29 H 0.05 0.32 7.74 -51.93 -0.40 -0.08 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.38 7.89 -51.93 -0.41 -0.03 16 32 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.40 0.83 8.83 -40.82 -0.36 0.47 16 34 H 0.40 2.22 8.93 -40.82 -0.36 1.86 16 35 H 0.11 1.82 6.53 -51.93 -0.34 1.48 16 36 H 0.04 0.62 7.59 -51.93 -0.39 0.22 16 37 H 0.40 4.54 8.36 -40.82 -0.34 4.20 16 38 H 0.10 1.89 8.14 -51.92 -0.42 1.47 16 39 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 40 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -38.18 343.75 -7.66 -45.84 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.93 Total: 3.53 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 0.06 Total: 0.80 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.43 Total: -47.69 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.17 Total: -19.54 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Atomic # 16 Polarization: -3.75 SS G_CDS: -1.99 Total: -5.74 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -38.18 -7.66 -45.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206089897.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.783 kcal (2) G-P(sol) polarization free energy of solvation -38.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds