Wall clock time and date at job start Tue Mar 31 2020 03:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.64489 * 2 1 4 4 C 1.54941 * 110.87658 * 236.73655 * 2 1 3 5 5 N 1.48528 * 103.22879 * 204.16008 * 4 2 1 6 6 C 1.46899 * 111.00191 * 159.72223 * 5 4 2 7 7 C 1.50695 * 109.47170 * 190.00032 * 6 5 4 8 8 N 1.34779 * 119.99877 * 180.02562 * 7 6 5 9 9 O 1.21276 * 120.00530 * 0.02562 * 7 6 5 10 10 C 1.47904 * 105.82054 * 39.20983 * 5 4 2 11 11 C 1.53997 * 107.05712 * 334.66803 * 10 5 4 12 12 H 1.09002 * 110.30886 * 120.14123 * 11 10 5 13 13 N 1.46502 * 110.39204 * 242.26562 * 11 10 5 14 14 C 1.34770 * 119.99871 * 272.15143 * 13 11 10 15 15 O 1.21276 * 120.00531 * 0.02562 * 14 13 11 16 16 C 1.50702 * 119.99606 * 179.97438 * 14 13 11 17 17 S 1.81007 * 109.47072 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00077 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00343 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00051 * 180.02562 * 18 17 16 21 21 N 1.31630 * 120.00080 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00035 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47034 * 89.99968 * 22 20 18 24 24 H 1.48503 * 109.47422 * 210.00275 * 22 20 18 25 25 H 1.48503 * 109.47014 * 330.00096 * 22 20 18 26 26 H 1.09003 * 109.47003 * 296.85194 * 1 2 3 27 27 H 1.09008 * 109.46770 * 56.84590 * 1 2 3 28 28 H 1.08995 * 109.47408 * 176.84975 * 1 2 3 29 29 H 1.09004 * 110.66629 * 322.59578 * 4 2 1 30 30 H 1.08998 * 110.66439 * 85.72687 * 4 2 1 31 31 H 1.09005 * 109.46734 * 309.99896 * 6 5 4 32 32 H 1.08999 * 109.47092 * 70.00222 * 6 5 4 33 33 H 0.97000 * 120.00194 * 359.97438 * 8 7 6 34 34 H 0.97002 * 119.99957 * 180.02562 * 8 7 6 35 35 H 1.08998 * 109.91720 * 215.31594 * 10 5 4 36 36 H 1.08993 * 109.91976 * 94.02293 * 10 5 4 37 37 H 0.97005 * 119.99621 * 92.15822 * 13 11 10 38 38 H 1.08998 * 109.47404 * 299.99751 * 16 14 13 39 39 H 1.08996 * 109.47420 * 60.00419 * 16 14 13 40 40 H 0.97004 * 120.00214 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0821 -0.7940 -1.2105 5 7 3.4359 -1.2052 -0.7584 6 6 3.9293 -2.3451 -1.5427 7 6 5.1821 -2.8886 -0.9055 8 7 5.8153 -3.9431 -1.4564 9 8 5.6206 -2.3771 0.1029 10 6 3.2920 -1.5664 0.6687 11 6 2.0770 -0.7908 1.2106 12 1 1.3217 -1.4829 1.5829 13 7 2.4910 0.1286 2.2735 14 6 2.5430 -0.2978 3.5509 15 8 2.2476 -1.4427 3.8206 16 6 2.9694 0.6478 4.6440 17 16 2.9382 -0.2154 6.2347 18 6 3.4636 1.0863 7.2996 19 1 3.6905 2.0600 6.8911 20 6 3.5868 0.8602 8.6635 21 7 3.9787 1.8328 9.4592 22 14 3.1950 -0.8240 9.3702 23 1 4.4238 -1.6578 9.3728 24 1 2.6958 -0.6735 10.7607 25 1 2.1537 -1.4796 8.5387 26 1 -0.3633 0.4642 0.9169 27 1 -0.3633 0.5621 -0.8604 28 1 -0.3634 -1.0260 -0.0565 29 1 1.4622 -1.6676 -1.4127 30 1 2.1482 -0.1556 -2.0915 31 1 3.1677 -3.1245 -1.5694 32 1 4.1507 -2.0184 -2.5587 33 1 5.4645 -4.3525 -2.2628 34 1 6.6216 -4.2932 -1.0461 35 1 4.1897 -1.2801 1.2165 36 1 3.1211 -2.6385 0.7650 37 1 2.7275 1.0443 2.0577 38 1 3.9803 1.0029 4.4436 39 1 2.2862 1.4964 4.6774 40 1 4.0652 1.6747 10.4123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206089897.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:34 Heat of formation + Delta-G solvation = -101.559370 kcal Electronic energy + Delta-G solvation = -22258.651123 eV Core-core repulsion = 18812.080163 eV Total energy + Delta-G solvation = -3446.570959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.44202 -40.50780 -39.14679 -35.56957 -34.69150 -34.67873 -33.72123 -31.38317 -29.58592 -28.25369 -27.83896 -25.69262 -23.01432 -21.92863 -21.32729 -21.14804 -19.83870 -18.23975 -17.96715 -17.94728 -17.55024 -17.12300 -16.81592 -16.35907 -16.02016 -15.90209 -15.50680 -15.13079 -14.89234 -14.62614 -14.38241 -14.09509 -13.84399 -13.44302 -13.35737 -13.26485 -13.02920 -13.02003 -12.78374 -12.64160 -12.30004 -11.89534 -11.83638 -11.67229 -11.18619 -11.02595 -10.87506 -10.65348 -10.55876 -10.12722 -9.44183 -9.01333 -8.52878 -6.23813 0.96806 1.30238 1.45164 1.53073 1.55004 1.64539 2.20645 2.25503 2.45102 2.70303 2.85170 3.01091 3.51428 3.62497 3.85277 3.97536 4.04717 4.21200 4.21786 4.30820 4.34113 4.44264 4.45378 4.57502 4.66897 4.81815 4.85542 4.96868 5.11892 5.20655 5.35379 5.52227 5.69636 5.74409 5.86384 5.95564 6.10006 6.45602 6.50376 6.92129 7.17768 7.38576 8.59784 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.019087 B = 0.003321 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.631795 B = 8430.394070 C = 9360.669191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.099 0.901 4 C 0.044 3.956 5 N -0.514 5.514 6 C 0.026 3.974 7 C 0.502 3.498 8 N -0.839 5.839 9 O -0.583 6.583 10 C 0.044 3.956 11 C 0.134 3.866 12 H 0.077 0.923 13 N -0.702 5.702 14 C 0.536 3.464 15 O -0.563 6.563 16 C -0.111 4.111 17 S -0.175 6.175 18 C -0.529 4.529 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.264 1.264 24 H -0.256 1.256 25 H -0.237 1.237 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.419 0.581 34 H 0.405 0.595 35 H 0.065 0.935 36 H 0.028 0.972 37 H 0.416 0.584 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.671 -8.386 -31.956 33.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.117 0.883 4 C -0.083 4.083 5 N -0.239 5.239 6 C -0.105 4.105 7 C 0.287 3.713 8 N -0.404 5.404 9 O -0.462 6.462 10 C -0.085 4.085 11 C 0.028 3.972 12 H 0.096 0.904 13 N -0.355 5.355 14 C 0.321 3.679 15 O -0.442 6.442 16 C -0.262 4.262 17 S 0.051 5.949 18 C -0.677 4.677 19 H 0.080 0.920 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.737 3.263 23 H -0.188 1.188 24 H -0.180 1.180 25 H -0.161 1.161 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.159 0.841 33 H 0.251 0.749 34 H 0.236 0.764 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.253 0.747 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.609 -9.348 -30.810 32.525 hybrid contribution 0.525 0.299 0.619 0.865 sum -4.084 -9.049 -30.190 31.781 Atomic orbital electron populations 1.21756 0.92569 1.02582 1.02802 1.22363 0.96863 1.00120 0.91725 0.88271 1.23470 0.87045 0.99647 0.98114 1.64679 1.24830 1.33028 1.01317 1.22391 0.94219 0.93987 0.99932 1.21152 0.86408 0.80018 0.83741 1.43712 1.31058 1.33390 1.32206 1.90806 1.68107 1.60311 1.27017 1.23107 0.98036 0.96906 0.90449 1.22057 0.95391 0.92123 0.87599 0.90437 1.45803 1.68778 1.15923 1.04976 1.19987 0.76377 0.87535 0.83974 1.90668 1.49629 1.20611 1.83260 1.23269 1.06332 1.01792 0.94793 1.84679 1.89254 1.20488 1.00445 1.22462 1.51936 0.98168 0.95131 0.92001 1.25566 0.93252 1.00888 0.96264 1.70016 1.46009 1.34027 1.05462 0.85861 0.80836 0.79935 0.79694 1.18846 1.17994 1.16097 0.93200 0.89773 0.92327 0.91589 0.86785 0.89235 0.84073 0.74904 0.76435 0.91669 0.95348 0.74710 0.87370 0.86512 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.17 71.98 0.66 -1.04 16 2 C -0.09 -1.34 3.36 -9.59 -0.03 -1.37 16 3 H 0.10 1.34 7.75 -2.39 -0.02 1.32 16 4 C 0.04 0.50 6.01 86.65 0.52 1.02 16 5 N -0.51 -9.38 5.26 -887.58 -4.67 -14.05 16 6 C 0.03 0.31 5.48 85.56 0.47 0.78 16 7 C 0.50 9.59 7.67 87.66 0.67 10.26 16 8 N -0.84 -8.24 8.87 -173.54 -1.54 -9.78 16 9 O -0.58 -18.67 14.63 -3.02 -0.04 -18.71 16 10 C 0.04 1.18 4.87 86.45 0.42 1.60 16 11 C 0.13 3.22 2.89 45.87 0.13 3.36 16 12 H 0.08 2.16 7.31 -2.39 -0.02 2.14 16 13 N -0.70 -19.22 5.02 -438.37 -2.20 -21.42 16 14 C 0.54 20.24 7.85 87.66 0.69 20.93 16 15 O -0.56 -25.88 15.54 -3.02 -0.05 -25.92 16 16 C -0.11 -4.52 6.16 71.24 0.44 -4.08 16 17 S -0.18 -9.31 18.55 -56.49 -1.05 -10.36 16 18 C -0.53 -31.98 10.04 67.95 0.68 -31.30 16 19 H 0.06 3.93 8.03 -2.91 -0.02 3.91 16 20 C 0.05 2.76 5.50 84.86 0.47 3.23 16 21 N -0.92 -57.26 13.97 21.65 0.30 -56.96 16 22 Si 0.91 46.44 27.74 68.60 1.90 48.34 16 23 H -0.26 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 25 H -0.24 -12.02 6.74 99.48 0.67 -11.35 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 0.71 8.11 -2.39 -0.02 0.69 16 29 H 0.07 0.57 7.74 -2.39 -0.02 0.55 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.71 7.89 -2.38 -0.02 0.69 16 32 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.42 0.61 8.83 -92.71 -0.82 -0.21 16 34 H 0.40 4.09 8.93 -92.71 -0.83 3.27 16 35 H 0.06 2.32 6.53 -2.39 -0.02 2.30 16 36 H 0.03 0.81 7.59 -2.39 -0.02 0.79 16 37 H 0.42 8.89 8.36 -92.70 -0.78 8.11 16 38 H 0.11 4.19 8.14 -2.40 -0.02 4.17 16 39 H 0.12 4.29 8.14 -2.40 -0.02 4.27 16 40 H 0.28 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -86.89 343.75 -3.60 -90.50 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -1.37 Total: 14.98 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 5.12 Total: 3.39 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -8.11 Total: -102.21 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -0.09 Total: -44.64 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.90 Total: 48.34 kcal Atomic # 16 Polarization: -9.31 SS G_CDS: -1.05 Total: -10.36 kcal Total: -86.89 -3.60 -90.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206089897.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.064 kcal (2) G-P(sol) polarization free energy of solvation -86.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds