Wall clock time and date at job start Tue Mar 31 2020 04:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99535 * 2 1 4 4 C 1.53003 * 109.47354 * 269.99848 * 3 2 1 5 5 H 1.09004 * 109.51950 * 305.00191 * 4 3 2 6 6 C 1.53139 * 109.52504 * 184.87320 * 4 3 2 7 7 O 1.43092 * 109.14271 * 184.85380 * 6 4 3 8 8 C 1.43069 * 113.64605 * 57.84907 * 7 6 4 9 9 C 1.53139 * 109.15459 * 302.08090 * 8 7 6 10 10 O 1.43069 * 109.52105 * 65.13258 * 4 3 2 11 11 C 1.34768 * 120.00027 * 179.97438 * 2 1 3 12 12 O 1.21587 * 120.00025 * 179.97438 * 11 2 1 13 13 N 1.34775 * 120.00126 * 359.97438 * 11 2 1 14 14 C 1.46506 * 119.99877 * 179.97438 * 13 11 2 15 15 C 1.50701 * 109.46960 * 180.02562 * 14 13 11 16 16 O 1.21293 * 120.00278 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00078 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99959 * 179.97438 * 17 15 14 19 19 H 1.07991 * 120.00408 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99816 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00126 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 299.99915 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00007 * 22 20 18 26 26 H 1.09004 * 109.46801 * 269.99644 * 1 2 3 27 27 H 1.08995 * 109.47159 * 30.00322 * 1 2 3 28 28 H 1.08996 * 109.46781 * 150.00258 * 1 2 3 29 29 H 1.09000 * 109.47669 * 30.00013 * 3 2 1 30 30 H 1.09004 * 109.47037 * 149.99796 * 3 2 1 31 31 H 1.08995 * 109.52522 * 304.68667 * 6 4 3 32 32 H 1.09006 * 109.52467 * 64.88220 * 6 4 3 33 33 H 1.09008 * 109.52456 * 182.18205 * 8 7 6 34 34 H 1.08997 * 109.58023 * 62.01850 * 8 7 6 35 35 H 1.09001 * 109.52701 * 295.41630 * 9 8 7 36 36 H 1.09000 * 109.52866 * 175.21463 * 9 8 7 37 37 H 0.96992 * 120.00150 * 0.02562 * 13 11 2 38 38 H 1.08994 * 109.47197 * 60.00650 * 14 13 11 39 39 H 1.09006 * 109.47268 * 300.00051 * 14 13 11 40 40 H 0.97000 * 119.99555 * 359.97438 * 17 15 14 41 41 H 0.96996 * 120.00340 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 2.9643 0.9137 -1.9823 6 6 3.3218 2.9712 -1.4456 7 8 3.4611 3.4418 -2.7897 8 6 2.2140 3.7284 -3.4295 9 6 1.3460 2.4668 -3.4265 10 8 1.2053 1.9971 -2.0823 11 6 2.1389 -1.1671 0.0005 12 8 3.3548 -1.1671 0.0001 13 7 1.4651 -2.3343 0.0016 14 6 2.1977 -3.6031 0.0016 15 6 1.2184 -4.7485 0.0022 16 8 0.0259 -4.5270 0.0031 17 7 1.6677 -6.0192 0.0028 18 6 0.7768 -7.0613 0.0039 19 1 -0.2850 -6.8640 0.0047 20 6 1.2400 -8.3713 0.0041 21 7 2.5320 -8.6113 0.0026 22 14 0.0261 -9.7912 0.0063 23 1 0.7687 -11.0772 0.0054 24 1 -0.8261 -9.7119 1.2198 25 1 -0.8291 -9.7132 -1.2052 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0284 0.5138 30 1 3.1499 1.1385 0.5139 31 1 2.8478 3.7421 -0.8381 32 1 4.3047 2.7370 -1.0368 33 1 2.3956 4.0431 -4.4573 34 1 1.7012 4.5247 -2.8900 35 1 1.8211 1.6963 -4.0337 36 1 0.3630 2.6998 -3.8357 37 1 0.4952 -2.3344 0.0016 38 1 2.8249 -3.6604 0.8911 39 1 2.8237 -3.6612 -0.8889 40 1 2.6213 -6.1964 0.0025 41 1 3.1623 -7.8741 0.0011 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327718355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:06 Heat of formation + Delta-G solvation = -170.992865 kcal Electronic energy + Delta-G solvation = -24772.373458 eV Core-core repulsion = 20880.038766 eV Total energy + Delta-G solvation = -3892.334693 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.61474 -40.82461 -40.17403 -37.35750 -36.65430 -36.45959 -35.50440 -33.34089 -33.06761 -30.03720 -29.13913 -27.88452 -26.79056 -25.88383 -24.22282 -22.21182 -21.79190 -21.16755 -20.11007 -19.54750 -17.96126 -17.84433 -17.76187 -17.38763 -17.07435 -16.96813 -16.67248 -16.31407 -16.11887 -15.73700 -15.54578 -15.30229 -14.96892 -14.48225 -14.32982 -14.15868 -13.61329 -13.57950 -13.40748 -13.28902 -12.98683 -12.85489 -12.80225 -12.44300 -11.95851 -11.91317 -11.72505 -11.59001 -11.49130 -11.36604 -10.63686 -10.38976 -10.23776 -10.18700 -9.59723 -8.97367 -6.13256 1.44699 1.46542 1.56324 1.83833 1.86440 1.98885 2.39125 2.59638 2.72154 2.79010 3.02564 3.12395 3.57457 3.85575 3.90236 3.95548 4.02929 4.12207 4.21225 4.27646 4.30878 4.33219 4.36164 4.53430 4.57508 4.63811 4.73365 4.81680 4.86529 4.93346 5.21294 5.40739 5.57393 5.75727 5.89287 5.97723 6.01129 6.45413 6.60763 6.79857 7.31356 7.40382 7.73098 8.49397 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.032483 B = 0.002537 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.790172 B =11034.483095 C =11127.040758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.622 5.622 3 C 0.144 3.856 4 C 0.043 3.957 5 H 0.038 0.962 6 C 0.036 3.964 7 O -0.402 6.402 8 C 0.022 3.978 9 C 0.020 3.980 10 O -0.382 6.382 11 C 0.702 3.298 12 O -0.628 6.628 13 N -0.726 5.726 14 C 0.141 3.859 15 C 0.438 3.562 16 O -0.618 6.618 17 N -0.572 5.572 18 C -0.412 4.412 19 H 0.081 0.919 20 C -0.039 4.039 21 N -0.912 5.912 22 Si 1.135 2.865 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.271 1.271 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.127 0.873 37 H 0.409 0.591 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.387 0.613 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 24.886 -3.002 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.358 5.358 3 C 0.021 3.979 4 C -0.017 4.017 5 H 0.056 0.944 6 C -0.041 4.041 7 O -0.321 6.321 8 C -0.054 4.054 9 C -0.057 4.057 10 O -0.301 6.301 11 C 0.403 3.597 12 O -0.510 6.510 13 N -0.385 5.385 14 C 0.012 3.988 15 C 0.225 3.775 16 O -0.505 6.505 17 N -0.210 5.210 18 C -0.541 4.541 19 H 0.099 0.901 20 C -0.238 4.238 21 N -0.550 5.550 22 Si 0.955 3.045 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.196 1.196 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.136 0.864 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.145 0.855 37 H 0.249 0.751 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.222 0.778 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.928 23.351 -2.991 23.621 hybrid contribution 0.378 1.298 -0.238 1.373 sum -1.550 24.649 -3.229 24.908 Atomic orbital electron populations 1.21908 0.77624 1.03979 1.02702 1.46910 1.07747 1.03846 1.77260 1.21450 0.99081 0.83863 0.93528 1.23194 0.86136 0.96835 0.95526 0.94382 1.23235 1.01899 0.94794 0.84150 1.88077 1.30366 1.85932 1.27740 1.23420 0.84981 0.96714 1.00272 1.23399 1.02885 0.95805 0.83603 1.88040 1.28591 1.86178 1.27324 1.15953 0.84900 0.81014 0.77835 1.90865 1.12790 1.86985 1.60311 1.44873 1.11052 1.03429 1.79163 1.20594 0.92832 0.81303 1.04071 1.20367 0.89510 0.84322 0.83259 1.90471 1.18090 1.84534 1.57421 1.41883 1.09139 1.05093 1.64859 1.20588 0.91788 0.87573 1.54151 0.90063 1.27936 1.00630 1.01515 0.93759 1.70966 1.01863 1.35026 1.47190 0.82615 0.72089 0.71733 0.78104 1.19906 1.19516 1.19601 0.91162 0.88299 0.92417 0.86378 0.88354 0.89744 0.86935 0.86176 0.90668 0.93774 0.85477 0.75081 0.88771 0.89183 0.77841 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.57 10.02 127.77 1.28 2.86 16 2 N -0.62 -15.38 2.84 -864.91 -2.46 -17.84 16 3 C 0.14 2.77 5.10 86.38 0.44 3.21 16 4 C 0.04 0.87 3.08 30.64 0.09 0.96 16 5 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 6 C 0.04 0.59 6.34 72.03 0.46 1.05 16 7 O -0.40 -7.78 10.85 -136.01 -1.47 -9.25 16 8 C 0.02 0.30 7.05 72.03 0.51 0.81 16 9 C 0.02 0.30 7.05 72.03 0.51 0.81 16 10 O -0.38 -7.47 9.33 -136.01 -1.27 -8.74 16 11 C 0.70 23.18 8.28 179.06 1.48 24.67 16 12 O -0.63 -24.21 15.92 -3.99 -0.06 -24.28 16 13 N -0.73 -25.13 5.39 -482.29 -2.60 -27.74 16 14 C 0.14 5.27 6.15 85.63 0.53 5.80 16 15 C 0.44 20.44 7.85 87.66 0.69 21.13 16 16 O -0.62 -32.31 15.24 -3.07 -0.05 -32.36 16 17 N -0.57 -28.70 5.28 -306.99 -1.62 -30.32 16 18 C -0.41 -22.94 9.68 84.04 0.81 -22.13 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.04 -2.10 5.50 84.93 0.47 -1.63 16 21 N -0.91 -50.44 13.68 21.66 0.30 -50.15 16 22 Si 1.14 47.22 29.92 68.60 2.05 49.27 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 24 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 25 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 26 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.10 1.61 7.12 -2.39 -0.02 1.59 16 28 H 0.06 1.29 6.36 -2.39 -0.02 1.27 16 29 H 0.12 1.52 8.07 -2.39 -0.02 1.50 16 30 H 0.10 2.00 7.42 -2.38 -0.02 1.98 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.41 14.01 5.17 -92.71 -0.48 13.53 16 38 H 0.09 3.33 8.14 -2.39 -0.02 3.32 16 39 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 40 H 0.39 18.04 6.73 -92.71 -0.62 17.42 16 41 H 0.26 14.00 6.78 -92.71 -0.63 13.37 16 Total: -1.00 -73.62 342.12 0.19 -73.43 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: 0.11 Total: 40.43 kcal Atomic # 6 Polarization: 30.26 SS G_CDS: 7.27 Total: 37.52 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -6.38 Total: -126.04 kcal Atomic # 8 Polarization: -71.77 SS G_CDS: -2.85 Total: -74.62 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.05 Total: 49.27 kcal Total: -73.62 0.19 -73.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327718355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.562 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds