Wall clock time and date at job start Tue Mar 31 2020 04:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99944 * 2 1 4 4 C 1.53001 * 110.54100 * 305.89251 * 3 2 1 5 5 N 1.46508 * 109.46871 * 297.57459 * 4 3 2 6 6 C 1.34774 * 119.99726 * 175.72413 * 5 4 3 7 7 O 1.21587 * 120.00431 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99859 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00195 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47423 * 179.97438 * 9 8 6 11 11 O 1.21293 * 119.99525 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00407 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00134 * 180.02562 * 12 10 9 14 14 H 1.07997 * 119.99944 * 359.97438 * 13 12 10 15 15 C 1.38953 * 119.99746 * 180.02562 * 13 12 10 16 16 N 1.31408 * 120.00197 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99626 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47509 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47042 * 120.00097 * 17 15 13 20 20 H 1.48501 * 109.47371 * 239.99963 * 17 15 13 21 21 C 1.54815 * 110.48852 * 68.50568 * 3 2 1 22 22 C 1.54990 * 102.09004 * 97.79424 * 21 3 2 23 23 O 1.44381 * 103.49121 * 37.02669 * 22 21 3 24 24 C 1.43746 * 106.97569 * 319.93499 * 23 22 21 25 25 H 1.08995 * 109.47396 * 306.07885 * 1 2 3 26 26 H 1.09000 * 109.46860 * 66.07599 * 1 2 3 27 27 H 1.08995 * 109.47296 * 186.07653 * 1 2 3 28 28 H 1.08998 * 109.47373 * 57.57408 * 4 3 2 29 29 H 1.08998 * 109.47703 * 177.57938 * 4 3 2 30 30 H 0.96997 * 119.99957 * 355.73134 * 5 4 3 31 31 H 0.96996 * 119.99991 * 359.97438 * 8 6 5 32 32 H 1.09005 * 109.46834 * 299.99457 * 9 8 6 33 33 H 1.08997 * 109.47189 * 59.99497 * 9 8 6 34 34 H 0.96998 * 119.99415 * 0.02562 * 12 10 9 35 35 H 0.97000 * 119.99879 * 180.02562 * 16 15 13 36 36 H 1.08995 * 110.90585 * 215.99828 * 21 3 2 37 37 H 1.08999 * 110.90532 * 339.60131 * 21 3 2 38 38 H 1.08999 * 110.62197 * 278.52278 * 22 21 3 39 39 H 1.09004 * 110.61624 * 155.52022 * 22 21 3 40 40 H 1.08999 * 109.88175 * 267.09406 * 24 23 22 41 41 H 1.08997 * 110.00006 * 146.00654 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4613 2.1376 -1.1607 5 7 1.8285 1.5062 -2.4307 6 6 1.3776 2.0182 -3.5930 7 8 0.6664 3.0044 -3.5876 8 7 1.7150 1.4371 -4.7613 9 6 1.2254 1.9940 -6.0248 10 6 1.7429 1.1661 -7.1727 11 8 2.4515 0.2057 -6.9567 12 7 1.4184 1.4929 -8.4394 13 6 1.8888 0.7394 -9.4837 14 1 2.5197 -0.1158 -9.2913 15 6 1.5547 1.0767 -10.7896 16 7 0.7883 2.1181 -11.0236 17 14 2.1962 0.0504 -12.2124 18 1 3.0320 -1.0583 -11.6859 19 1 1.0513 -0.5116 -12.9731 20 1 3.0148 0.9050 -13.1096 21 6 1.7452 2.0166 1.3494 22 6 3.0684 1.7627 2.1155 23 8 4.0769 1.8581 1.0868 24 6 3.5462 1.2120 -0.0825 25 1 -0.3634 0.6052 0.8305 26 1 -0.3633 0.4167 -0.9394 27 1 -0.3633 -1.0218 0.1088 28 1 0.3755 2.1957 -1.0844 29 1 1.8827 3.1419 -1.1191 30 1 2.3961 0.7196 -2.4350 31 1 2.2827 0.6506 -4.7657 32 1 0.1354 1.9810 -6.0294 33 1 1.5770 3.0203 -6.1299 34 1 0.8521 2.2612 -8.6120 35 1 0.5547 2.3533 -11.9353 36 1 1.5803 3.0838 1.2008 37 1 0.9015 1.5627 1.8691 38 1 3.0686 0.7684 2.5622 39 1 3.2236 2.5269 2.8772 40 1 3.8535 0.1664 -0.0999 41 1 3.9006 1.7174 -0.9808 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329212450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:16 Heat of formation + Delta-G solvation = -178.000258 kcal Electronic energy + Delta-G solvation = -24556.486380 eV Core-core repulsion = 20663.847824 eV Total energy + Delta-G solvation = -3892.638556 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.152 amu Computer time = 5.47 seconds Orbital eigenvalues (eV) -41.67356 -40.85135 -39.94786 -38.21536 -36.27333 -35.69135 -35.27978 -33.37447 -32.51746 -30.59759 -29.30441 -27.88788 -26.71563 -25.93964 -23.70175 -21.92303 -21.47864 -21.32981 -20.12514 -19.67933 -18.43769 -17.66872 -17.47050 -17.09920 -16.95378 -16.47773 -16.42557 -16.20121 -15.97655 -15.83869 -15.57649 -15.27254 -15.13309 -14.88795 -14.04429 -13.95192 -13.81233 -13.54906 -13.47215 -13.25299 -12.91010 -12.83292 -12.59654 -12.44327 -12.17212 -12.11109 -11.67944 -11.57705 -11.50888 -10.75853 -10.68750 -10.55349 -10.48623 -10.10233 -9.87941 -8.50959 -6.00980 1.35344 1.42463 1.50633 1.58855 1.89752 2.07573 2.28378 2.55182 2.86695 3.03244 3.16393 3.25344 3.33655 3.52190 3.70934 4.10249 4.21037 4.24395 4.37435 4.40271 4.42933 4.46185 4.50610 4.51733 4.62814 4.66188 4.80691 4.85334 4.91316 4.97065 5.28311 5.34252 5.39385 5.69319 5.85898 5.93118 6.12010 6.48396 6.96197 7.03979 7.41759 7.49186 7.94918 8.66239 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.034533 B = 0.002411 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.623116 B =11608.427176 C =11743.113378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.379 6.379 3 C 0.077 3.923 4 C 0.123 3.877 5 N -0.730 5.730 6 C 0.707 3.293 7 O -0.630 6.630 8 N -0.723 5.723 9 C 0.142 3.858 10 C 0.434 3.566 11 O -0.624 6.624 12 N -0.560 5.560 13 C -0.336 4.336 14 H 0.086 0.914 15 C -0.011 4.011 16 N -0.916 5.916 17 Si 0.997 3.003 18 H -0.270 1.270 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.171 4.171 22 C 0.046 3.954 23 O -0.392 6.392 24 C 0.057 3.943 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.409 0.591 31 H 0.410 0.590 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.399 0.601 35 H 0.280 0.720 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.077 0.923 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 -0.534 24.926 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.298 6.298 3 C 0.036 3.964 4 C -0.001 4.001 5 N -0.386 5.386 6 C 0.406 3.594 7 O -0.511 6.511 8 N -0.381 5.381 9 C 0.013 3.987 10 C 0.221 3.779 11 O -0.512 6.512 12 N -0.195 5.195 13 C -0.465 4.465 14 H 0.104 0.896 15 C -0.212 4.212 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.194 1.194 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.209 4.209 22 C -0.030 4.030 23 O -0.311 6.311 24 C -0.020 4.020 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.245 0.755 31 H 0.248 0.752 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.095 0.905 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.224 -0.256 24.896 24.898 hybrid contribution -0.074 -0.541 -1.139 1.263 sum -0.298 -0.797 23.757 23.772 Atomic orbital electron populations 1.22975 0.79741 1.04076 1.00757 1.87979 1.21224 1.25728 1.94876 1.23096 0.94574 0.84221 0.94467 1.21821 1.01059 0.96528 0.80733 1.44834 1.55840 1.34127 1.03819 1.15883 0.80238 0.82450 0.80786 1.90887 1.44028 1.29094 1.87117 1.44686 1.55661 1.34116 1.03625 1.20591 0.99961 0.96873 0.81235 1.20419 0.85333 0.87548 0.84611 1.90473 1.43567 1.32459 1.84693 1.41838 1.45001 1.28182 1.04498 1.19764 1.30178 1.10970 0.85570 0.89600 1.26128 0.96437 0.97828 1.00794 1.69684 1.36071 1.26828 1.23061 0.84813 0.78184 0.77920 0.77070 1.19445 1.19635 1.19649 1.23687 1.00336 1.02693 0.94220 1.23728 0.85223 1.02914 0.91128 1.88910 1.40963 1.78840 1.22437 1.23162 0.89637 0.99347 0.89872 0.91748 0.94582 0.88202 0.90760 0.90491 0.75493 0.75243 0.88964 0.88970 0.76678 0.91075 0.88308 0.87469 0.91166 0.86771 0.90518 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.11 113.37 1.15 1.42 16 2 O -0.38 -6.29 10.26 -148.98 -1.53 -7.82 16 3 C 0.08 1.18 0.67 -9.80 -0.01 1.17 16 4 C 0.12 2.36 3.93 86.38 0.34 2.70 16 5 N -0.73 -16.72 5.03 -478.52 -2.41 -19.13 16 6 C 0.71 22.11 8.57 179.05 1.53 23.64 16 7 O -0.63 -23.78 16.34 -3.99 -0.07 -23.84 16 8 N -0.72 -23.79 5.53 -482.30 -2.67 -26.46 16 9 C 0.14 5.20 6.15 85.63 0.53 5.73 16 10 C 0.43 19.98 7.85 87.66 0.69 20.67 16 11 O -0.62 -32.15 15.24 -3.07 -0.05 -32.20 16 12 N -0.56 -28.07 5.29 -306.99 -1.62 -29.69 16 13 C -0.34 -18.47 9.68 84.04 0.81 -17.65 16 14 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 15 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 16 N -0.92 -48.66 13.05 21.66 0.28 -48.37 16 17 Si 1.00 41.75 29.55 68.60 2.03 43.78 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 21 C -0.17 -1.87 6.19 31.89 0.20 -1.67 16 22 C 0.05 0.55 7.72 72.66 0.56 1.11 16 23 O -0.39 -7.31 11.52 -148.98 -1.72 -9.02 16 24 C 0.06 0.96 6.61 72.35 0.48 1.44 16 25 H 0.06 0.61 6.47 -2.39 -0.02 0.59 16 26 H 0.04 0.59 6.73 -2.39 -0.02 0.57 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.49 6.58 -2.39 -0.02 1.47 16 29 H 0.08 1.54 8.11 -2.39 -0.02 1.52 16 30 H 0.41 8.08 7.97 -92.71 -0.74 7.34 16 31 H 0.41 13.22 7.45 -92.71 -0.69 12.53 16 32 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 33 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 34 H 0.40 19.23 7.90 -92.71 -0.73 18.49 16 35 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 36 H 0.10 0.97 7.85 -2.39 -0.02 0.95 16 37 H 0.11 0.85 6.49 -2.39 -0.02 0.83 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.08 1.28 7.97 -2.39 -0.02 1.26 16 41 H 0.10 1.67 7.30 -2.39 -0.02 1.65 16 Total: -1.00 -68.86 343.12 -2.07 -70.93 By element: Atomic # 1 Polarization: 44.48 SS G_CDS: -1.07 Total: 43.41 kcal Atomic # 6 Polarization: 31.68 SS G_CDS: 6.75 Total: 38.43 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -6.42 Total: -123.65 kcal Atomic # 8 Polarization: -69.53 SS G_CDS: -3.36 Total: -72.89 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -68.86 -2.07 -70.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329212450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.074 kcal (2) G-P(sol) polarization free energy of solvation -68.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.47 seconds