Wall clock time and date at job start Tue Mar 31 2020 04:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99838 * 2 1 4 4 H 1.48497 * 109.47262 * 240.00378 * 3 2 1 5 5 H 1.48503 * 109.46927 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47101 * 119.99799 * 3 2 1 7 7 C 1.38949 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99828 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99977 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99727 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00044 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.47350 * 180.02562 * 12 10 9 14 14 C 1.34770 * 120.00209 * 180.02562 * 13 12 10 15 15 O 1.21592 * 120.00263 * 5.04882 * 14 13 12 16 16 N 1.34777 * 120.00013 * 185.05710 * 14 13 12 17 17 C 1.47150 * 120.98017 * 354.67529 * 16 14 13 18 18 C 1.53297 * 108.41714 * 129.42830 * 17 16 14 19 19 O 1.43047 * 109.17505 * 52.28784 * 18 17 16 20 20 C 1.42962 * 114.18516 * 297.43723 * 19 18 17 21 21 C 1.47155 * 120.98233 * 174.66068 * 16 14 13 22 22 H 1.08997 * 109.68109 * 110.79404 * 21 16 14 23 23 C 1.52998 * 109.68115 * 350.27291 * 21 16 14 24 24 C 1.53004 * 109.46779 * 182.29541 * 23 21 16 25 25 O 1.42904 * 109.46709 * 175.24771 * 24 23 21 26 26 H 0.97000 * 120.00167 * 359.97438 * 1 2 3 27 27 H 0.96998 * 120.00405 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.47177 * 60.00188 * 12 10 9 29 29 H 1.08997 * 109.47464 * 300.00297 * 12 10 9 30 30 H 0.96997 * 119.99289 * 0.02562 * 13 12 10 31 31 H 1.09007 * 109.68564 * 249.16774 * 17 16 14 32 32 H 1.08997 * 109.68317 * 9.68410 * 17 16 14 33 33 H 1.08997 * 109.51850 * 172.24280 * 18 17 16 34 34 H 1.09000 * 109.51382 * 292.40334 * 18 17 16 35 35 H 1.08993 * 109.51672 * 302.65939 * 20 19 18 36 36 H 1.09004 * 109.55595 * 182.53320 * 20 19 18 37 37 H 1.08993 * 109.47119 * 302.29478 * 23 21 16 38 38 H 1.08998 * 109.46774 * 62.29803 * 23 21 16 39 39 H 1.09005 * 109.46904 * 295.23937 * 24 23 21 40 40 H 1.08994 * 109.47505 * 55.24416 * 24 23 21 41 41 H 0.96699 * 113.99526 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2439 -4.8629 -0.0010 13 7 2.1959 -5.9765 -0.0017 14 6 1.7467 -7.2471 -0.0019 15 8 0.5551 -7.4707 -0.0941 16 7 2.6183 -8.2700 0.1003 17 6 4.0703 -8.0312 0.0963 18 6 4.6843 -8.7600 1.2971 19 8 4.2649 -10.1275 1.2813 20 6 2.8531 -10.3087 1.4143 21 6 2.1460 -9.6586 0.2195 22 1 2.3845 -10.2070 -0.6918 23 6 0.6331 -9.6706 0.4471 24 6 0.1560 -11.1131 0.6274 25 8 -1.2363 -11.1174 0.9495 26 1 -0.4850 0.8400 0.0004 27 1 0.3535 -2.3907 -0.0005 28 1 0.6162 -4.9205 -0.8903 29 1 0.6182 -4.9209 0.8896 30 1 3.1495 -5.7991 -0.0021 31 1 4.5032 -8.4160 -0.8272 32 1 4.2667 -6.9620 0.1761 33 1 5.7714 -8.7110 1.2359 34 1 4.3491 -8.2872 2.2202 35 1 2.5114 -9.8416 2.3378 36 1 2.6226 -11.3739 1.4381 37 1 0.3957 -9.0949 1.3416 38 1 0.1327 -9.2272 -0.4138 39 1 0.3166 -11.6671 -0.2975 40 1 0.7172 -11.5832 1.4348 41 1 -1.6075 -12.0011 1.0778 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333768818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:47 Heat of formation + Delta-G solvation = -164.603128 kcal Electronic energy + Delta-G solvation = -25092.431605 eV Core-core repulsion = 21200.373992 eV Total energy + Delta-G solvation = -3892.057613 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.152 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -41.96358 -40.35288 -39.38970 -37.99480 -36.36770 -35.89073 -35.66932 -33.93946 -33.35579 -30.42902 -29.32760 -27.86303 -26.42795 -25.36496 -23.49673 -22.55056 -21.33480 -20.98457 -20.09262 -19.28849 -18.30690 -17.59808 -17.56092 -17.30597 -17.08172 -16.66270 -16.26607 -16.16752 -15.99460 -15.82523 -15.62218 -15.46917 -14.94105 -14.62148 -14.38326 -13.95811 -13.68350 -13.56487 -13.54140 -12.90530 -12.85367 -12.69660 -12.47879 -12.44420 -12.15947 -12.13810 -11.88444 -11.56965 -11.28994 -10.88005 -10.57346 -10.35999 -10.23625 -10.10088 -9.51258 -8.51552 -6.02137 1.34827 1.37580 1.43372 1.54117 1.87834 2.02599 2.26549 2.67269 2.76081 3.12402 3.15585 3.36661 3.61933 3.87326 3.97776 4.04860 4.09976 4.19697 4.27253 4.33146 4.39140 4.41009 4.43628 4.49512 4.61547 4.66856 4.79313 4.83367 5.16183 5.18376 5.30696 5.37682 5.60481 5.74441 5.90967 6.03847 6.46531 6.81824 6.97501 7.02190 7.39450 7.47323 7.92581 8.65150 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.003029 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.512749 B = 9242.202554 C =10273.183527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.088 0.912 9 N -0.558 5.558 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.726 5.726 14 C 0.705 3.295 15 O -0.610 6.610 16 N -0.630 5.630 17 C 0.071 3.929 18 C 0.049 3.951 19 O -0.385 6.385 20 C 0.052 3.948 21 C 0.136 3.864 22 H 0.095 0.905 23 C -0.107 4.107 24 C 0.072 3.928 25 O -0.599 6.599 26 H 0.280 0.720 27 H 0.399 0.601 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.407 0.593 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.135 0.865 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.135 0.865 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.968 -22.283 2.011 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.106 0.894 9 N -0.193 5.193 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.386 5.386 14 C 0.407 3.593 15 O -0.491 6.491 16 N -0.369 5.369 17 C -0.052 4.052 18 C -0.028 4.028 19 O -0.303 6.303 20 C -0.025 4.025 21 C 0.032 3.968 22 H 0.113 0.887 23 C -0.145 4.145 24 C -0.006 4.006 25 O -0.407 6.407 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.247 0.753 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.152 0.848 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.153 0.847 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.969 -21.759 1.891 22.399 hybrid contribution -0.225 0.944 -0.003 0.970 sum 4.745 -20.815 1.889 21.433 Atomic orbital electron populations 1.69679 1.07063 1.29740 1.49154 1.26145 0.96523 1.02727 0.95712 0.84921 0.77716 0.76169 0.79146 1.19429 1.19674 1.19409 1.19716 0.93009 0.83493 1.50541 0.89444 1.41828 1.09586 1.04590 1.63333 1.20363 0.88113 0.85829 0.83627 1.90455 1.15078 1.87538 1.58108 1.20573 0.91014 0.83181 1.03917 1.44990 1.11025 1.03382 1.79240 1.15961 0.84880 0.80646 0.77840 1.90939 1.15630 1.83303 1.59234 1.47354 1.06248 1.05524 1.77766 1.22589 0.78970 1.02158 1.01447 1.23109 1.01705 0.81828 0.96169 1.87967 1.22499 1.25645 1.94167 1.23267 0.80667 1.02914 0.95698 1.21812 0.94139 0.80326 1.00486 0.88704 1.21796 0.93207 0.95878 1.03619 1.22389 0.81834 0.96126 1.00229 1.86491 1.24858 1.35815 1.93554 0.91041 0.76736 0.89169 0.89213 0.75277 0.88715 0.89200 0.84762 0.92928 0.93112 0.84706 0.93561 0.90543 0.91808 0.91410 0.75255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.89 13.05 21.66 0.28 -48.61 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 3 Si 1.00 41.63 29.55 68.60 2.03 43.66 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.34 -18.62 9.68 84.04 0.81 -17.81 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.16 5.29 -306.99 -1.62 -29.78 16 10 C 0.43 20.12 7.85 87.66 0.69 20.80 16 11 O -0.62 -31.96 15.24 -3.07 -0.05 -32.01 16 12 C 0.14 5.33 6.16 85.63 0.53 5.86 16 13 N -0.73 -24.76 5.44 -482.30 -2.63 -27.39 16 14 C 0.70 23.19 8.13 179.06 1.46 24.64 16 15 O -0.61 -23.44 12.10 -4.01 -0.05 -23.49 16 16 N -0.63 -15.80 3.02 -811.37 -2.45 -18.25 16 17 C 0.07 1.37 6.63 86.35 0.57 1.94 16 18 C 0.05 0.80 6.99 72.08 0.50 1.30 16 19 O -0.38 -6.86 10.74 -148.98 -1.60 -8.46 16 20 C 0.05 0.85 5.65 72.08 0.41 1.25 16 21 C 0.14 2.80 3.22 44.97 0.14 2.94 16 22 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 23 C -0.11 -2.68 3.58 30.59 0.11 -2.57 16 24 C 0.07 1.22 6.81 71.98 0.49 1.71 16 25 O -0.60 -12.36 13.66 -148.98 -2.04 -14.39 16 26 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.40 19.44 7.90 -92.71 -0.73 18.70 16 28 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 29 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 30 H 0.41 13.46 4.95 -92.71 -0.46 13.01 16 31 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.09 1.85 5.66 -2.39 -0.01 1.83 16 33 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.14 1.38 6.79 -2.38 -0.02 1.36 16 37 H 0.05 1.43 7.43 -2.39 -0.02 1.41 16 38 H 0.08 2.48 6.11 -2.39 -0.01 2.46 16 39 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.07 0.78 6.35 -2.39 -0.02 0.76 16 41 H 0.40 3.73 9.12 -74.06 -0.68 3.06 16 Total: -1.00 -72.11 334.54 -2.71 -74.82 By element: Atomic # 1 Polarization: 44.67 SS G_CDS: -0.77 Total: 43.90 kcal Atomic # 6 Polarization: 33.83 SS G_CDS: 6.18 Total: 40.01 kcal Atomic # 7 Polarization: -117.62 SS G_CDS: -6.42 Total: -124.03 kcal Atomic # 8 Polarization: -74.62 SS G_CDS: -3.73 Total: -78.35 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -72.11 -2.71 -74.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333768818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.787 kcal (2) G-P(sol) polarization free energy of solvation -72.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds