Wall clock time and date at job start Tue Mar 31 2020 04:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28782 * 125.44764 * 2 1 4 4 N 1.28995 * 108.72693 * 179.72200 * 3 2 1 5 5 C 1.33323 * 107.35287 * 0.43027 * 4 3 2 6 6 C 1.50699 * 126.55021 * 179.83603 * 5 4 3 7 7 N 1.46496 * 109.47157 * 269.68909 * 6 5 4 8 8 C 1.34782 * 120.00050 * 179.97438 * 7 6 5 9 9 O 1.21273 * 119.99689 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99837 * 179.97438 * 8 7 6 11 11 H 1.08994 * 109.47091 * 42.23672 * 10 8 7 12 12 C 1.50705 * 109.46863 * 282.23802 * 10 8 7 13 13 H 1.08000 * 120.00198 * 305.01633 * 12 10 8 14 14 C 1.37874 * 119.99499 * 125.02044 * 12 10 8 15 15 N 1.31517 * 119.99768 * 188.21291 * 14 12 10 16 16 Si 1.86797 * 120.00659 * 8.21930 * 14 12 10 17 17 H 1.48501 * 109.47014 * 275.63297 * 16 14 12 18 18 H 1.48505 * 109.47019 * 35.62312 * 16 14 12 19 19 H 1.48501 * 109.47614 * 155.62920 * 16 14 12 20 20 C 1.50691 * 109.46813 * 162.24039 * 10 8 7 21 21 C 1.38232 * 120.00382 * 64.00257 * 20 10 8 22 22 C 1.38238 * 120.00072 * 179.79018 * 21 20 10 23 23 C 1.38233 * 120.00137 * 0.43446 * 22 21 20 24 24 C 1.38241 * 120.00074 * 359.82115 * 23 22 21 25 25 C 1.38238 * 119.99517 * 359.97438 * 24 23 22 26 26 N 1.28883 * 125.44864 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47197 * 270.00311 * 1 2 3 28 28 H 1.08996 * 109.46920 * 30.00944 * 1 2 3 29 29 H 1.09007 * 109.46566 * 150.00453 * 1 2 3 30 30 H 1.09002 * 109.47195 * 149.68612 * 6 5 4 31 31 H 1.09007 * 109.47103 * 29.68513 * 6 5 4 32 32 H 0.97001 * 119.99966 * 359.97438 * 7 6 5 33 33 H 0.96995 * 120.00533 * 179.97438 * 15 14 12 34 34 H 1.07998 * 120.00106 * 359.97438 * 21 20 10 35 35 H 1.08002 * 120.00230 * 180.27775 * 22 21 20 36 36 H 1.07997 * 120.00332 * 179.83097 * 23 22 21 37 37 H 1.07995 * 120.00298 * 179.97438 * 24 23 22 38 38 H 1.07999 * 119.99840 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2119 1.0491 0.0000 4 7 3.4473 0.6780 0.0059 5 6 3.4621 -0.6551 0.0002 6 6 4.6825 -1.5392 0.0003 7 7 5.0781 -1.8257 -1.3808 8 6 6.1516 -2.6026 -1.6270 9 8 6.7897 -3.0648 -0.7051 10 6 6.5582 -2.8978 -3.0478 11 1 6.4799 -1.9890 -3.6444 12 6 5.6496 -3.9548 -3.6210 13 1 5.5327 -4.9002 -3.1122 14 6 4.9676 -3.7147 -4.7949 15 7 4.0548 -4.5653 -5.2109 16 14 5.3400 -2.1815 -5.7949 17 1 4.5585 -1.0385 -5.2581 18 1 6.7902 -1.8738 -5.7076 19 1 4.9675 -2.4131 -7.2136 20 6 7.9813 -3.3926 -3.0705 21 6 8.3092 -4.5830 -2.4490 22 6 9.6140 -5.0391 -2.4735 23 6 10.5925 -4.3003 -3.1119 24 6 10.2657 -3.1072 -3.7289 25 6 8.9601 -2.6533 -3.7080 26 7 2.2125 -1.0499 0.0005 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8899 -0.5140 29 1 -0.3633 -0.8901 -0.5138 30 1 4.4547 -2.4730 0.5142 31 1 5.4989 -1.0314 0.5141 32 1 4.5674 -1.4563 -2.1182 33 1 3.5747 -4.3964 -6.0365 34 1 7.5455 -5.1582 -1.9467 35 1 9.8694 -5.9714 -1.9918 36 1 11.6124 -4.6552 -3.1287 37 1 11.0302 -2.5298 -4.2273 38 1 8.7046 -1.7214 -4.1904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411376121.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:31 Heat of formation + Delta-G solvation = 119.962091 kcal Electronic energy + Delta-G solvation = -23658.840629 eV Core-core repulsion = 20118.724361 eV Total energy + Delta-G solvation = -3540.116268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.41518 -39.35179 -37.92497 -35.60393 -34.35884 -33.63435 -32.78936 -31.55459 -30.11042 -29.34689 -28.01227 -26.60252 -23.62669 -23.16454 -22.32757 -21.83470 -20.94523 -19.45939 -17.72580 -17.54014 -17.17853 -16.51456 -16.09626 -15.47087 -14.80569 -14.58784 -14.25865 -14.14410 -13.87067 -13.80047 -13.59892 -13.10715 -12.83836 -12.73680 -12.61104 -12.47240 -12.03242 -11.94435 -11.73961 -11.17553 -11.07353 -11.06468 -10.99450 -10.47969 -10.40068 -10.13316 -10.02146 -9.56411 -9.07734 -8.70836 -8.55729 -8.11325 -7.81216 -6.34077 -4.35588 1.11895 1.81772 1.97650 2.17157 2.23797 3.08519 3.21048 3.23233 3.56429 3.68372 4.02887 4.15720 4.17535 4.58132 4.64934 4.71182 4.89408 5.01674 5.33166 5.56644 5.60329 5.63946 5.70876 5.76292 5.79560 5.97733 6.01622 6.10661 6.19369 6.35935 6.42386 6.74771 6.86557 6.92152 7.18791 7.25824 7.28313 7.59883 7.80588 8.08077 8.25588 8.26905 8.70430 9.03782 9.23865 10.77163 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.015109 B = 0.004516 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.760825 B = 6198.712103 C = 7205.526017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.143 5.143 3 N -0.067 5.067 4 N -0.271 5.271 5 C 0.158 3.842 6 C 0.223 3.777 7 N -0.728 5.728 8 C 0.537 3.463 9 O -0.555 6.555 10 C 0.034 3.966 11 H 0.061 0.939 12 C -0.505 4.505 13 H 0.085 0.915 14 C 0.083 3.917 15 N -0.879 5.879 16 Si 0.864 3.136 17 H -0.273 1.273 18 H -0.258 1.258 19 H -0.283 1.283 20 C -0.031 4.031 21 C -0.070 4.070 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.131 4.131 25 C -0.132 4.132 26 N -0.286 5.286 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.402 0.598 33 H 0.269 0.731 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 7.974 7.135 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.055 5.055 3 N -0.060 5.060 4 N -0.143 5.143 5 C -0.125 4.125 6 C 0.096 3.904 7 N -0.382 5.382 8 C 0.327 3.673 9 O -0.433 6.433 10 C 0.012 3.988 11 H 0.079 0.921 12 C -0.543 4.543 13 H 0.103 0.897 14 C -0.122 4.122 15 N -0.514 5.514 16 Si 0.690 3.310 17 H -0.199 1.199 18 H -0.182 1.182 19 H -0.208 1.208 20 C -0.032 4.032 21 C -0.088 4.088 22 C -0.149 4.149 23 C -0.160 4.160 24 C -0.149 4.149 25 C -0.150 4.150 26 N -0.138 5.138 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.236 0.764 33 H 0.079 0.921 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.768 8.141 7.662 11.798 hybrid contribution -0.234 0.501 -1.101 1.232 sum -4.002 8.642 6.562 11.565 Atomic orbital electron populations 1.22443 0.69110 1.07034 1.05921 1.50095 1.10807 1.00977 1.43605 1.78958 0.96556 1.14403 1.16118 1.75873 1.09797 1.11171 1.17445 1.25687 0.93287 0.90616 1.02866 1.19291 0.88311 0.96128 0.86715 1.45877 1.32178 1.53846 1.06335 1.21515 0.77927 0.75048 0.92843 1.90588 1.54153 1.51581 1.46962 1.18327 0.91599 0.98649 0.90194 0.92105 1.20541 1.24055 1.01082 1.08576 0.89688 1.25043 0.93756 0.96465 0.96947 1.69870 1.22331 1.36557 1.22648 0.87041 0.80083 0.83474 0.80410 1.19891 1.18205 1.20848 1.19930 0.94434 0.94259 0.94543 1.20908 0.95497 0.95420 0.96950 1.21047 0.93654 0.99622 1.00611 1.20879 0.98531 0.96023 1.00568 1.20885 0.96026 0.96944 1.01048 1.21006 0.92962 0.99833 1.01240 1.74816 1.03333 1.14983 1.20664 0.88066 0.86988 0.86902 0.88797 0.88599 0.76436 0.92083 0.86164 0.87097 0.87349 0.87252 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 11.63 59.85 0.70 1.24 16 2 N -0.14 -1.73 4.40 -16.69 -0.07 -1.81 16 3 N -0.07 -0.94 13.25 60.35 0.80 -0.14 16 4 N -0.27 -4.32 12.50 32.45 0.41 -3.92 16 5 C 0.16 2.48 7.74 -156.62 -1.21 1.27 16 6 C 0.22 3.58 6.30 -5.20 -0.03 3.54 16 7 N -0.73 -13.72 5.55 -61.47 -0.34 -14.06 16 8 C 0.54 11.67 6.96 -10.98 -0.08 11.59 16 9 O -0.56 -12.90 14.96 5.56 0.08 -12.82 16 10 C 0.03 0.78 2.20 -94.08 -0.21 0.57 16 11 H 0.06 1.34 4.71 -51.93 -0.24 1.09 16 12 C -0.51 -13.15 8.32 -34.44 -0.29 -13.44 16 13 H 0.09 2.46 7.87 -52.49 -0.41 2.04 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 15 N -0.88 -24.84 13.96 55.43 0.77 -24.06 16 16 Si 0.86 19.63 26.85 -169.99 -4.56 15.06 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.26 -5.65 6.95 56.52 0.39 -5.25 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.03 -0.68 4.52 -104.63 -0.47 -1.15 16 21 C -0.07 -1.50 7.98 -39.58 -0.32 -1.82 16 22 C -0.13 -2.44 10.05 -39.58 -0.40 -2.83 16 23 C -0.14 -2.43 10.05 -39.58 -0.40 -2.83 16 24 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 25 C -0.13 -2.65 9.67 -39.58 -0.38 -3.03 16 26 N -0.29 -4.24 12.13 32.47 0.39 -3.84 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.11 0.54 8.14 -51.92 -0.42 0.11 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.10 1.45 8.14 -51.92 -0.42 1.03 16 32 H 0.40 7.50 8.46 -40.82 -0.35 7.16 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.12 2.71 7.55 -52.49 -0.40 2.31 16 35 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.11 2.05 7.95 -52.49 -0.42 1.63 16 LS Contribution 335.43 15.07 5.05 5.05 Total: -1.00 -32.78 335.43 -5.39 -38.17 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -4.34 Total: 9.86 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -3.58 Total: -7.50 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 1.96 Total: -47.83 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.56 Total: 15.06 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.78 -5.39 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411376121.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.132 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds