Wall clock time and date at job start Tue Mar 31 2020 04:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47694 * 2 1 4 4 C 1.50704 * 109.46989 * 119.99998 * 2 1 3 5 5 N 1.34781 * 120.00133 * 300.00059 * 4 2 1 6 6 O 1.21281 * 120.00040 * 119.99296 * 4 2 1 7 7 N 1.46898 * 109.46784 * 239.99355 * 2 1 3 8 8 C 1.47965 * 110.99848 * 175.00050 * 7 2 1 9 9 C 1.53935 * 86.30536 * 222.47707 * 8 7 2 10 10 N 1.46498 * 113.73563 * 138.02493 * 9 8 7 11 11 C 1.46506 * 119.99540 * 306.13522 * 10 9 8 12 12 C 1.34764 * 120.00285 * 126.13346 * 10 9 8 13 13 O 1.21283 * 119.99909 * 359.97438 * 12 10 9 14 14 C 1.50696 * 120.00426 * 180.02562 * 12 10 9 15 15 S 1.80998 * 109.47588 * 179.97438 * 14 12 10 16 16 C 1.76196 * 100.00228 * 180.02562 * 15 14 12 17 17 H 1.07999 * 120.00040 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99967 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99806 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99710 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47013 * 60.00330 * 20 18 16 22 22 H 1.48500 * 109.46797 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47024 * 300.00026 * 20 18 16 24 24 C 1.48188 * 111.07166 * 75.71697 * 7 2 1 25 25 H 1.08999 * 109.47036 * 60.00062 * 1 2 3 26 26 H 1.08995 * 109.47694 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46646 * 300.00185 * 1 2 3 28 28 H 0.97000 * 119.99712 * 359.97438 * 5 4 2 29 29 H 0.96989 * 120.00115 * 180.02562 * 5 4 2 30 30 H 1.09000 * 113.75647 * 108.09985 * 8 7 2 31 31 H 1.08996 * 113.76001 * 336.85135 * 8 7 2 32 32 H 1.09000 * 113.73124 * 269.31018 * 9 8 7 33 33 H 1.09004 * 109.47046 * 94.06997 * 11 10 9 34 34 H 1.09004 * 109.46655 * 214.06225 * 11 10 9 35 35 H 1.08997 * 109.47393 * 334.06328 * 11 10 9 36 36 H 1.09003 * 109.47350 * 300.00171 * 14 12 10 37 37 H 1.09000 * 109.47372 * 59.99904 * 14 12 10 38 38 H 0.97007 * 119.99808 * 180.02562 * 19 18 16 39 39 H 1.09005 * 113.65724 * 23.13413 * 24 7 2 40 40 H 1.08996 * 113.92326 * 251.81889 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7067 -0.2500 2.4546 6 8 2.7295 -1.6966 1.1192 7 7 2.0196 -0.6926 -1.1994 8 6 3.4938 -0.6090 -1.2953 9 6 3.2809 -0.3316 -2.7944 10 7 4.1469 0.7229 -3.3277 11 6 4.1761 2.0403 -2.6875 12 6 4.9165 0.4810 -4.4072 13 8 4.8927 -0.6098 -4.9369 14 6 5.8078 1.5655 -4.9555 15 16 6.7079 0.9368 -6.3944 16 6 7.6440 2.3678 -6.8191 17 1 7.5459 3.2704 -6.2342 18 6 8.5067 2.3355 -7.9060 19 7 8.6251 1.2359 -8.6197 20 14 9.4986 3.8530 -8.3566 21 1 10.3720 4.2299 -7.2164 22 1 10.3365 3.5610 -9.5473 23 1 8.5752 4.9744 -8.6646 24 6 1.8755 0.1597 -2.4030 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.1493 0.5389 2.5436 29 1 2.0303 -0.7070 3.2466 30 1 4.0013 -1.5518 -1.0908 31 1 3.9224 0.2316 -0.7497 32 1 3.2755 -1.2308 -3.4105 33 1 4.9921 2.0754 -1.9656 34 1 4.3280 2.8091 -3.4451 35 1 3.2301 2.2166 -2.1755 36 1 5.1998 2.4203 -5.2518 37 1 6.5188 1.8737 -4.1889 38 1 9.2283 1.2132 -9.3791 39 1 1.8291 1.2259 -2.1809 40 1 1.0903 -0.1671 -3.0846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499631417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:10 Heat of formation + Delta-G solvation = -58.955646 kcal Electronic energy + Delta-G solvation = -22200.870718 eV Core-core repulsion = 18756.147195 eV Total energy + Delta-G solvation = -3444.723523 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.03162 -40.60369 -39.41310 -36.16162 -34.95479 -34.57743 -33.15116 -30.83803 -28.29961 -27.74281 -27.55928 -26.72478 -24.73375 -21.94195 -20.93157 -20.15626 -19.60551 -18.72733 -18.09761 -17.90748 -17.20105 -16.89664 -16.87103 -16.52796 -16.11827 -15.78599 -15.39260 -14.99532 -14.61418 -14.52129 -14.11958 -14.02737 -13.83270 -13.52525 -13.25803 -13.17455 -13.12091 -13.05816 -12.85514 -12.67306 -12.55604 -12.22662 -11.84059 -11.67948 -11.11992 -10.92507 -10.84604 -10.64654 -10.26262 -9.88878 -9.68788 -8.67397 -8.33526 -6.12402 1.25013 1.44847 1.45689 1.53407 1.55620 1.62599 2.00889 2.28297 2.45078 2.88239 3.00475 3.27300 3.51092 3.58929 3.76472 3.89795 3.97781 4.05288 4.09730 4.21201 4.24547 4.37296 4.47336 4.58996 4.64261 4.77102 4.82155 4.84695 4.91933 4.97943 5.12872 5.32225 5.42057 5.50340 5.82738 5.95070 6.20135 6.24600 6.48680 7.07233 7.11929 7.36712 8.75558 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.037856 B = 0.002631 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.474899 B =10639.976306 C =10788.106762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.028 3.972 3 H 0.104 0.896 4 C 0.514 3.486 5 N -0.835 5.835 6 O -0.581 6.581 7 N -0.473 5.473 8 C 0.014 3.986 9 C 0.107 3.893 10 N -0.600 5.600 11 C 0.064 3.936 12 C 0.531 3.469 13 O -0.566 6.566 14 C -0.121 4.121 15 S -0.158 6.158 16 C -0.544 4.544 17 H 0.085 0.915 18 C 0.012 3.988 19 N -0.913 5.913 20 Si 1.000 3.000 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.260 1.260 24 C 0.010 3.990 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.418 0.582 29 H 0.407 0.593 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.271 0.729 39 H 0.110 0.890 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.092 7.627 23.890 31.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.084 4.084 3 H 0.121 0.879 4 C 0.298 3.702 5 N -0.400 5.400 6 O -0.459 6.459 7 N -0.197 5.197 8 C -0.115 4.115 9 C 0.002 3.998 10 N -0.333 5.333 11 C -0.077 4.077 12 C 0.319 3.681 13 O -0.444 6.444 14 C -0.272 4.272 15 S 0.069 5.931 16 C -0.692 4.692 17 H 0.103 0.897 18 C -0.193 4.193 19 N -0.549 5.549 20 Si 0.821 3.179 21 H -0.186 1.186 22 H -0.205 1.205 23 H -0.184 1.184 24 C -0.119 4.119 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.113 0.887 28 H 0.250 0.750 29 H 0.238 0.762 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.983 4.718 22.792 30.035 hybrid contribution 1.162 2.269 0.489 2.596 sum -17.820 6.987 23.281 30.139 Atomic orbital electron populations 1.21751 0.89687 1.03098 1.04685 1.22382 0.99497 0.97460 0.89060 0.87874 1.20838 0.79068 0.83893 0.86366 1.43683 1.55341 1.34019 1.06957 1.90778 1.39583 1.28155 1.87412 1.68516 1.08248 1.41110 1.01819 1.24176 0.90805 1.01935 0.94625 1.23042 0.90633 0.91857 0.94265 1.47821 1.42099 1.14579 1.28827 1.22163 1.04315 0.82001 0.99216 1.20256 0.79855 0.88091 0.79939 1.90686 1.66978 1.26671 1.60093 1.23368 1.01069 1.00741 1.02006 1.85667 1.52301 1.22094 1.33027 1.23157 1.28946 0.99095 1.18006 0.89717 1.26167 0.97509 1.00690 0.94932 1.70190 1.37008 1.29247 1.18453 0.84983 0.77834 0.77146 0.77902 1.18627 1.20547 1.18444 1.24562 0.96247 0.98511 0.92547 0.90114 0.92989 0.88664 0.74984 0.76158 0.91380 0.89632 0.88690 0.91348 0.89846 0.87766 0.86888 0.87453 0.92023 0.87272 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.96 9.22 71.98 0.66 -0.30 16 2 C 0.03 0.34 2.08 44.17 0.09 0.43 16 3 H 0.10 0.63 7.68 -2.39 -0.02 0.62 16 4 C 0.51 8.43 7.19 87.66 0.63 9.06 16 5 N -0.83 -5.59 8.77 -173.52 -1.52 -7.11 16 6 O -0.58 -16.39 15.96 -3.03 -0.05 -16.43 16 7 N -0.47 -9.20 5.73 -884.20 -5.07 -14.27 16 8 C 0.01 0.34 6.01 86.40 0.52 0.86 16 9 C 0.11 2.71 4.42 46.45 0.21 2.92 16 10 N -0.60 -16.00 3.10 -825.90 -2.56 -18.56 16 11 C 0.06 1.03 9.19 127.77 1.17 2.20 16 12 C 0.53 20.46 7.69 87.66 0.67 21.13 16 13 O -0.57 -27.60 15.32 -3.04 -0.05 -27.65 16 14 C -0.12 -4.83 4.76 71.23 0.34 -4.49 16 15 S -0.16 -8.92 20.57 -56.49 -1.16 -10.08 16 16 C -0.54 -31.08 9.50 67.96 0.65 -30.44 16 17 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 18 C 0.01 0.66 5.49 84.86 0.47 1.13 16 19 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 20 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 C 0.01 0.16 6.86 86.36 0.59 0.76 16 25 H 0.08 0.45 7.73 -2.39 -0.02 0.43 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.09 0.08 7.56 -2.39 -0.02 0.06 16 28 H 0.42 -0.38 8.25 -92.71 -0.76 -1.15 16 29 H 0.41 2.49 8.93 -92.72 -0.83 1.66 16 30 H 0.07 2.05 7.93 -2.39 -0.02 2.03 16 31 H 0.09 1.65 7.21 -2.39 -0.02 1.63 16 32 H 0.09 3.14 7.19 -2.39 -0.02 3.12 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.08 1.30 6.61 -2.39 -0.02 1.29 16 35 H 0.10 0.90 5.77 -2.39 -0.01 0.88 16 36 H 0.11 3.97 7.41 -2.39 -0.02 3.95 16 37 H 0.11 3.89 8.11 -2.40 -0.02 3.87 16 38 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 39 H 0.11 1.04 5.53 -2.38 -0.01 1.03 16 40 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -88.37 342.41 -2.60 -90.97 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -0.51 Total: 10.70 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 6.00 Total: 3.26 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -8.86 Total: -96.26 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.09 Total: -44.08 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.16 Total: -10.08 kcal Total: -88.37 -2.60 -90.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499631417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.016 kcal (2) G-P(sol) polarization free energy of solvation -88.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds