Wall clock time and date at job start Tue Mar 31 2020 03:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99732 * 2 1 4 4 C 1.53004 * 109.46789 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.51305 * 304.99603 * 4 3 2 6 6 O 1.20831 * 119.99748 * 265.00360 * 5 4 3 7 7 O 1.34227 * 119.99710 * 85.00336 * 5 4 3 8 8 C 1.53299 * 109.51092 * 184.89799 * 4 3 2 9 9 N 1.47149 * 108.38443 * 292.32482 * 8 4 3 10 10 C 1.34776 * 120.98196 * 129.44147 * 9 8 4 11 11 O 1.21287 * 120.00192 * 354.59370 * 10 9 8 12 12 C 1.50705 * 120.00204 * 174.59134 * 10 9 8 13 13 H 1.09005 * 109.46947 * 43.23199 * 12 10 9 14 14 C 1.52996 * 109.47030 * 283.22963 * 12 10 9 15 15 C 1.50698 * 109.47416 * 163.22678 * 12 10 9 16 16 H 1.08001 * 119.99729 * 0.02562 * 15 12 10 17 17 C 1.37872 * 120.00316 * 180.02562 * 15 12 10 18 18 N 1.31519 * 119.99906 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 120.00207 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.46985 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46980 * 120.00197 * 19 17 15 22 22 H 1.48499 * 109.47113 * 240.00127 * 19 17 15 23 23 C 1.47144 * 118.03755 * 309.46940 * 9 8 4 24 24 C 1.53293 * 108.38827 * 50.53164 * 23 9 8 25 25 O 1.42952 * 109.51463 * 65.10048 * 4 3 2 26 26 H 1.09002 * 109.47001 * 60.00782 * 1 2 3 27 27 H 1.09001 * 109.46680 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47407 * 299.99823 * 1 2 3 29 29 H 1.09004 * 109.47174 * 60.00008 * 3 2 1 30 30 H 1.08999 * 109.47116 * 299.99686 * 3 2 1 31 31 H 0.96702 * 116.99546 * 179.97438 * 7 5 4 32 32 H 1.09002 * 109.68253 * 52.05026 * 8 4 3 33 33 H 1.08999 * 109.68482 * 172.56519 * 8 4 3 34 34 H 1.08992 * 109.47200 * 293.29013 * 14 12 10 35 35 H 1.09003 * 109.46893 * 53.29293 * 14 12 10 36 36 H 1.09003 * 109.46983 * 173.28866 * 14 12 10 37 37 H 0.96997 * 119.99835 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.68674 * 170.26072 * 23 9 8 39 39 H 1.09007 * 109.67961 * 290.80741 * 23 9 8 40 40 H 1.08993 * 109.51479 * 67.62649 * 24 23 9 41 41 H 1.08999 * 109.51473 * 187.77927 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9724 0.3330 1.1646 6 8 4.3018 0.8537 2.2041 7 8 3.9957 -1.0039 1.0466 8 6 4.1595 2.5795 0.1240 9 7 3.8732 3.3269 -1.1108 10 6 3.3442 4.5656 -1.0651 11 8 3.0060 5.0418 -0.0021 12 6 3.1728 5.3592 -2.3348 13 1 2.7778 4.7115 -3.1175 14 6 4.5274 5.9202 -2.7722 15 6 2.2134 6.4955 -2.0914 16 1 1.7721 6.6299 -1.1149 17 6 1.8989 7.3635 -3.1154 18 7 2.4358 7.1996 -4.3047 19 14 0.7101 8.7725 -2.8135 20 1 0.2500 8.7381 -1.4020 21 1 1.3947 10.0633 -3.0792 22 1 -0.4588 8.6366 -3.7192 23 6 4.1809 2.6817 -2.3969 24 6 3.5558 1.2819 -2.3975 25 8 3.9672 0.5812 -1.2212 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6885 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 4.2836 -1.5079 1.8200 32 1 3.7267 3.1011 0.9777 33 1 5.2375 2.4889 0.2573 34 1 4.8667 6.6584 -2.0457 35 1 5.2537 5.1097 -2.8331 36 1 4.4267 6.3919 -3.7497 37 1 2.2149 7.8105 -5.0250 38 1 3.7623 3.2710 -3.2128 39 1 5.2612 2.6014 -2.5181 40 1 2.4694 1.3684 -2.4076 41 1 3.8866 0.7358 -3.2809 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593969983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:36 Heat of formation + Delta-G solvation = -222.086591 kcal Electronic energy + Delta-G solvation = -26583.694315 eV Core-core repulsion = 22656.851281 eV Total energy + Delta-G solvation = -3926.843034 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 301.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.31205 -40.92356 -39.68390 -38.44708 -37.28001 -35.95169 -35.71568 -33.68567 -32.32473 -29.98267 -28.26035 -27.25057 -26.69684 -26.12551 -24.36108 -23.57314 -21.33716 -20.27017 -19.40681 -18.58339 -18.44552 -18.04133 -17.76215 -17.49601 -17.02190 -16.58672 -16.46949 -16.17620 -16.05365 -15.76714 -15.31670 -14.80764 -14.73864 -14.56612 -14.30174 -13.99247 -13.49341 -13.39704 -13.08465 -12.97066 -12.86020 -12.68795 -12.61377 -12.55915 -12.47906 -12.24107 -12.07279 -12.02118 -11.64848 -11.26826 -11.02877 -10.87321 -10.63167 -10.32953 -9.66102 -8.16686 -6.25612 0.86089 1.38815 1.42201 1.52274 1.58770 1.78158 1.94668 2.27754 2.44169 2.70451 3.13924 3.28789 3.51165 3.78799 3.86610 3.97387 4.03874 4.14677 4.26217 4.32150 4.40157 4.45152 4.48363 4.52338 4.73356 4.76872 4.78295 4.88907 4.94558 5.01390 5.34405 5.40284 5.45926 5.72392 5.74720 5.89121 5.91124 6.13428 6.43872 6.80535 6.88854 7.30440 7.43579 8.89653 Molecular weight = 301.14amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.004407 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.805686 B = 6352.369729 C = 6647.533218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.385 6.385 3 C 0.043 3.957 4 C 0.126 3.874 5 C 0.521 3.479 6 O -0.531 6.531 7 O -0.481 6.481 8 C 0.105 3.895 9 N -0.621 5.621 10 C 0.527 3.473 11 O -0.580 6.580 12 C 0.032 3.968 13 H 0.053 0.947 14 C -0.116 4.116 15 C -0.530 4.530 16 H 0.044 0.956 17 C 0.026 3.974 18 N -0.906 5.906 19 Si 0.951 3.049 20 H -0.282 1.282 21 H -0.277 1.277 22 H -0.272 1.272 23 C 0.065 3.935 24 C 0.044 3.956 25 O -0.349 6.349 26 H 0.048 0.952 27 H 0.112 0.888 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.428 0.572 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.016 0.984 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.266 0.734 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 -17.804 2.512 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.304 6.304 3 C -0.034 4.034 4 C 0.083 3.917 5 C 0.363 3.637 6 O -0.421 6.421 7 O -0.293 6.293 8 C -0.019 4.019 9 N -0.356 5.356 10 C 0.318 3.682 11 O -0.459 6.459 12 C 0.011 3.989 13 H 0.071 0.929 14 C -0.174 4.174 15 C -0.568 4.568 16 H 0.062 0.938 17 C -0.174 4.174 18 N -0.545 5.545 19 Si 0.777 3.223 20 H -0.207 1.207 21 H -0.202 1.202 22 H -0.197 1.197 23 C -0.057 4.057 24 C -0.032 4.032 25 O -0.267 6.267 26 H 0.066 0.934 27 H 0.130 0.870 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.290 0.710 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.036 0.964 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.116 0.884 40 H 0.077 0.923 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.731 -17.458 2.815 17.768 hybrid contribution -0.826 1.251 0.784 1.692 sum 0.905 -16.207 3.599 16.626 Atomic orbital electron populations 1.23016 0.79086 1.04511 1.00718 1.87941 1.21614 1.25297 1.95535 1.22927 0.91279 0.86671 1.02548 1.21432 0.93645 0.91385 0.85206 1.22183 0.72247 0.82217 0.87098 1.90771 1.45780 1.74971 1.30598 1.84592 1.79028 1.18046 1.47616 1.21817 1.01421 0.89096 0.89540 1.48329 1.64386 1.15763 1.07169 1.21830 0.73624 0.80322 0.92382 1.90529 1.50993 1.70438 1.33906 1.18818 0.96190 0.94245 0.89615 0.92894 1.21529 0.94519 0.99147 1.02173 1.21250 1.26195 1.12546 0.96807 0.93756 1.25492 0.97548 0.99515 0.94824 1.69935 1.44101 1.38579 1.01887 0.85618 0.79291 0.79610 0.77808 1.20705 1.20229 1.19737 1.22810 1.02927 0.94537 0.85418 1.23380 0.99616 0.91922 0.88285 1.88094 1.76082 1.50371 1.12199 0.93362 0.86976 0.93721 0.92346 0.90949 0.70978 0.89230 0.88795 0.96441 0.93192 0.90726 0.92512 0.87356 0.88424 0.92275 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.01 113.37 1.25 1.68 16 2 O -0.38 -9.90 9.99 -141.58 -1.41 -11.32 16 3 C 0.04 1.22 4.43 71.98 0.32 1.54 16 4 C 0.13 3.54 0.85 -11.44 -0.01 3.53 16 5 C 0.52 14.07 6.78 71.24 0.48 14.55 16 6 O -0.53 -16.61 17.01 21.95 0.37 -16.24 16 7 O -0.48 -10.01 12.99 -45.94 -0.60 -10.60 16 8 C 0.10 3.36 4.73 86.36 0.41 3.77 16 9 N -0.62 -21.19 2.63 -817.35 -2.15 -23.34 16 10 C 0.53 23.50 6.88 87.66 0.60 24.11 16 11 O -0.58 -30.43 15.09 -3.05 -0.05 -30.48 16 12 C 0.03 1.54 1.80 -12.29 -0.02 1.51 16 13 H 0.05 2.47 6.47 -2.38 -0.02 2.46 16 14 C -0.12 -5.14 8.71 71.98 0.63 -4.51 16 15 C -0.53 -29.57 8.35 25.60 0.21 -29.35 16 16 H 0.04 2.68 6.88 -2.91 -0.02 2.66 16 17 C 0.03 1.41 5.30 84.65 0.45 1.85 16 18 N -0.91 -48.49 11.40 21.45 0.24 -48.25 16 19 Si 0.95 43.64 29.54 68.60 2.03 45.67 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 C 0.06 1.67 5.67 86.35 0.49 2.16 16 24 C 0.04 0.96 6.60 72.08 0.48 1.43 16 25 O -0.35 -8.90 9.98 -129.47 -1.29 -10.19 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 2.14 5.98 -2.39 -0.01 2.13 16 31 H 0.43 4.41 9.10 -74.06 -0.67 3.73 16 32 H 0.09 3.31 7.03 -2.39 -0.02 3.30 16 33 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.05 1.81 7.30 -2.39 -0.02 1.79 16 36 H 0.07 3.58 6.28 -2.39 -0.01 3.56 16 37 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 38 H 0.11 2.94 5.56 -2.39 -0.01 2.93 16 39 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.06 1.36 6.15 -2.39 -0.01 1.34 16 41 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -71.32 335.26 2.83 -68.49 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.39 Total: 13.98 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 5.28 Total: 22.28 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -1.90 Total: -71.59 kcal Atomic # 8 Polarization: -75.86 SS G_CDS: -2.98 Total: -78.83 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -71.32 2.83 -68.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593969983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.592 kcal (2) G-P(sol) polarization free energy of solvation -71.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds