Wall clock time and date at job start Tue Mar 31 2020 04:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48505 * 109.46959 * 240.00442 * 3 2 1 5 5 H 1.48500 * 109.47385 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46859 * 120.00374 * 3 2 1 7 7 C 1.38814 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99646 * 196.01902 * 7 2 1 9 9 N 1.36932 * 120.00061 * 16.01154 * 7 2 1 10 10 C 1.47085 * 120.87899 * 207.58161 * 9 7 2 11 11 C 1.53238 * 108.52003 * 231.16318 * 10 9 7 12 12 N 1.46904 * 109.33754 * 306.17156 * 11 10 9 13 13 C 1.38795 * 110.99512 * 187.25122 * 12 11 10 14 14 N 1.32329 * 119.79179 * 299.24009 * 13 12 11 15 15 C 1.31954 * 121.74560 * 180.28638 * 14 13 12 16 16 C 1.38173 * 121.11441 * 359.44368 * 15 14 13 17 17 C 1.38594 * 119.44968 * 0.26845 * 16 15 14 18 18 C 1.39462 * 118.39617 * 0.02562 * 17 16 15 19 19 C 1.48369 * 120.56810 * 180.02562 * 18 17 16 20 20 N 1.34069 * 126.68259 * 175.18262 * 19 18 17 21 21 N 1.28991 * 107.26723 * 180.02562 * 20 19 18 22 22 N 1.28728 * 108.94844 * 0.02562 * 21 20 19 23 23 H 0.97001 * 125.33078 * 180.02562 * 22 21 20 24 24 N 1.28869 * 109.33120 * 359.72225 * 22 21 20 25 25 C 1.46897 * 111.27016 * 63.10867 * 12 11 10 26 26 C 1.47078 * 120.88079 * 27.55755 * 9 7 2 27 27 H 0.97003 * 119.99790 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.62881 * 111.45880 * 10 9 7 29 29 H 1.08996 * 109.62783 * 350.87072 * 10 9 7 30 30 H 1.08997 * 109.49402 * 186.21015 * 11 10 9 31 31 H 1.09000 * 109.49349 * 66.12933 * 11 10 9 32 32 H 1.07997 * 119.44279 * 179.70887 * 15 14 13 33 33 H 1.08009 * 120.27017 * 180.29349 * 16 15 14 34 34 H 1.08001 * 120.79967 * 180.02562 * 17 16 15 35 35 H 1.08996 * 109.49931 * 56.84983 * 25 12 11 36 36 H 1.09000 * 109.49162 * 176.93642 * 25 12 11 37 37 H 1.09002 * 109.63071 * 248.54436 * 26 9 7 38 38 H 1.08996 * 109.62983 * 9.12731 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0588 -1.2205 0.2576 9 7 1.3654 -2.3649 -0.3282 10 6 1.8204 -3.6571 0.2071 11 6 1.9871 -4.6359 -0.9601 12 7 0.7389 -4.6884 -1.7330 13 6 0.7943 -5.6823 -2.7002 14 7 1.7173 -5.6277 -3.6469 15 6 1.8016 -6.5485 -4.5883 16 6 0.9309 -7.6210 -4.6180 17 6 -0.0511 -7.7286 -3.6460 18 6 -0.1244 -6.7401 -2.6649 19 6 -1.1564 -6.8079 -1.6011 20 7 -1.2821 -5.9809 -0.5533 21 7 -2.3000 -6.3812 0.1304 22 7 -2.8086 -7.4151 -0.4435 23 1 -3.5834 -7.9068 -0.1291 24 7 -2.1311 -7.6906 -1.5046 25 6 0.4296 -3.3847 -2.3351 26 6 0.1991 -2.3546 -1.2241 27 1 -0.4850 0.8401 0.0004 28 1 1.0801 -4.0447 0.9070 29 1 2.7759 -3.5270 0.7151 30 1 2.2170 -5.6284 -0.5726 31 1 2.7996 -4.2992 -1.6040 32 1 2.5667 -6.4648 -5.3458 33 1 1.0152 -8.3694 -5.3922 34 1 -0.7429 -8.5580 -3.6482 35 1 1.2638 -3.0654 -2.9597 36 1 -0.4701 -3.4698 -2.9445 37 1 -0.6971 -2.6170 -0.6618 38 1 0.0827 -1.3634 -1.6623 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606350206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:53 Heat of formation + Delta-G solvation = 216.651129 kcal Electronic energy + Delta-G solvation = -24699.918855 eV Core-core repulsion = 21196.288089 eV Total energy + Delta-G solvation = -3503.630766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.135 amu Computer time = 5.11 seconds Orbital eigenvalues (eV) -44.19547 -40.44987 -37.60118 -34.49499 -34.21725 -33.68717 -31.84159 -31.22846 -29.98009 -29.52859 -26.31702 -25.02365 -24.26871 -23.31151 -22.46387 -22.00246 -21.62007 -19.14045 -18.99071 -17.34133 -16.90596 -16.60901 -16.26901 -15.88057 -14.83181 -14.58388 -14.34623 -13.87355 -13.59991 -13.44000 -13.27232 -13.13529 -12.94636 -12.52511 -12.13811 -11.80963 -11.38600 -11.24623 -11.00985 -10.97457 -10.80652 -10.65196 -10.50975 -10.27752 -10.02854 -9.76482 -9.70623 -9.61955 -9.43751 -8.66019 -8.39700 -7.93465 -6.52394 -5.66310 -3.07627 0.61154 1.15741 1.41317 2.38611 2.56386 3.46360 3.51535 3.53116 3.77119 3.78903 4.03830 4.35927 4.58565 4.62361 4.80329 5.11264 5.21174 5.30554 5.50739 5.56062 5.60436 5.71317 5.91632 6.02296 6.03843 6.11211 6.26487 6.34490 6.46257 6.49673 6.53150 6.63740 6.79259 7.09603 7.34742 7.70945 7.80147 7.81945 7.91352 7.97187 8.45062 8.55871 9.33419 9.96832 10.56676 11.42585 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.004792 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.187277 B = 5841.102873 C = 6902.163301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.248 4.248 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.152 3.848 11 C 0.057 3.943 12 N -0.469 5.469 13 C 0.348 3.652 14 N -0.507 5.507 15 C 0.127 3.873 16 C -0.191 4.191 17 C -0.037 4.037 18 C -0.050 4.050 19 C 0.224 3.776 20 N -0.199 5.199 21 N -0.059 5.059 22 N -0.239 5.239 23 H 0.470 0.530 24 N -0.309 5.309 25 C 0.047 3.953 26 C 0.184 3.816 27 H 0.253 0.747 28 H 0.032 0.968 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.156 0.844 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.031 0.969 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.232 -18.970 -7.650 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.378 4.378 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.026 3.974 11 C -0.071 4.071 12 N -0.193 5.193 13 C 0.118 3.882 14 N -0.219 5.219 15 C -0.033 4.033 16 C -0.211 4.211 17 C -0.065 4.065 18 C -0.057 4.057 19 C -0.056 4.056 20 N -0.072 5.072 21 N -0.055 5.055 22 N -0.083 5.083 23 H 0.323 0.677 24 N -0.161 5.161 25 C -0.080 4.080 26 C 0.058 3.942 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.174 0.826 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.431 -17.973 -6.708 19.489 hybrid contribution 0.085 -0.205 -0.849 0.877 sum -3.346 -18.178 -7.556 19.969 Atomic orbital electron populations 1.70022 1.05147 1.25378 1.54281 1.25026 0.95277 0.98215 1.01150 0.86388 0.78863 0.83570 0.78032 1.21158 1.21733 1.20981 1.19143 0.92153 0.84672 1.41850 0.91777 1.44052 1.33971 1.01501 1.52041 1.20957 0.97893 0.86238 0.92360 1.22592 0.88413 0.99497 0.96594 1.60243 1.34820 1.04979 1.19233 1.20310 0.87619 0.91312 0.89009 1.68130 1.22417 1.27840 1.03529 1.22786 0.96571 0.89060 0.94888 1.21996 0.97497 1.00871 1.00738 1.21534 0.96646 0.96753 0.91615 1.17965 0.95620 0.97549 0.94617 1.23177 0.95111 0.90719 0.96574 1.76690 1.07709 1.19926 1.02854 1.79154 1.05937 0.99789 1.20605 1.47732 1.24628 1.21137 1.14846 0.67697 1.74802 1.08155 1.25861 1.07313 1.22911 0.98817 0.87670 0.98637 1.20830 0.89286 0.95678 0.88442 0.93696 0.95038 0.92603 0.92604 0.93922 0.82649 0.84297 0.83953 0.94190 0.92822 0.95056 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 11.16 55.49 0.62 -26.29 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 3 Si 0.90 22.22 29.58 -169.99 -5.03 17.19 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 7 C -0.25 -7.02 9.63 -15.06 -0.14 -7.17 16 8 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -15.56 3.03 -172.01 -0.52 -16.08 16 10 C 0.15 3.43 6.69 -3.60 -0.02 3.41 16 11 C 0.06 1.13 5.39 -3.70 -0.02 1.11 16 12 N -0.47 -9.16 2.84 -172.65 -0.49 -9.65 16 13 C 0.35 5.94 5.28 -154.90 -0.82 5.13 16 14 N -0.51 -8.10 9.78 -12.21 -0.12 -8.22 16 15 C 0.13 1.47 11.16 -17.52 -0.20 1.27 16 16 C -0.19 -1.83 10.09 -39.47 -0.40 -2.23 16 17 C -0.04 -0.42 9.83 -38.99 -0.38 -0.80 16 18 C -0.05 -0.75 5.91 -104.55 -0.62 -1.37 16 19 C 0.22 3.50 7.90 -156.29 -1.23 2.26 16 20 N -0.20 -3.56 10.98 32.14 0.35 -3.21 16 21 N -0.06 -0.90 13.47 60.35 0.81 -0.09 16 22 N -0.24 -2.62 7.90 60.35 0.48 -2.14 16 23 H 0.47 2.64 8.96 -340.36 -3.05 -0.41 16 24 N -0.31 -3.93 12.16 32.16 0.39 -3.54 16 25 C 0.05 1.01 5.42 -3.70 -0.02 0.99 16 26 C 0.18 4.65 5.40 -3.60 -0.02 4.63 16 27 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.20 7.95 -51.93 -0.41 0.79 16 30 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 31 H 0.04 0.88 8.05 -51.93 -0.42 0.46 16 32 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 34 H 0.14 1.27 7.96 -52.49 -0.42 0.85 16 35 H 0.04 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.05 1.09 8.09 -51.93 -0.42 0.67 16 37 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -34.18 321.84 -9.74 -43.92 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -7.12 Total: -3.94 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -3.96 Total: 7.19 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: 1.52 Total: -69.21 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.18 -9.74 -43.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606350206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.575 kcal (2) G-P(sol) polarization free energy of solvation -34.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 226.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 216.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.11 seconds